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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT1G06850
Z-value: 1.47
Transcription factors associated with AT1G06850
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G06850
|
AT1G06850 | basic leucine-zipper 52 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| bZIP52 | arTal_v1_Chr1_+_2105048_2105055 | 0.61 | 5.7e-04 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_-_19648362_19648362 Show fit | 6.34 |
AT5G48490.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr5_-_6976036_6976036 Show fit | 4.96 |
AT5G20630.1
|
germin 3 |
|
| arTal_v1_Chr4_-_18098633_18098633 Show fit | 4.63 |
AT4G38770.1
|
proline-rich protein 4 |
|
| arTal_v1_Chr1_-_20648891_20648891 Show fit | 4.59 |
AT1G55330.1
|
arabinogalactan protein 21 |
|
| arTal_v1_Chr2_-_17648945_17649062 Show fit | 4.45 |
AT2G42380.1
AT2G42380.4 AT2G42380.3 AT2G42380.2 AT2G42380.5 |
Basic-leucine zipper (bZIP) transcription factor family protein |
|
| arTal_v1_Chr3_-_21523375_21523518 Show fit | 4.32 |
AT3G58120.2
AT3G58120.1 |
Basic-leucine zipper (bZIP) transcription factor family protein |
|
| arTal_v1_Chr2_+_9844134_9844230 Show fit | 4.08 |
AT2G23130.1
AT2G23130.2 |
arabinogalactan protein 17 |
|
| arTal_v1_Chr3_+_3857780_3857780 Show fit | 4.05 |
AT3G12110.1
|
actin-11 |
|
| arTal_v1_Chr1_+_12267808_12267808 Show fit | 3.90 |
AT1G33811.1
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
|
| arTal_v1_Chr2_-_17827648_17827648 Show fit | 3.79 |
AT2G42840.1
|
protodermal factor 1 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G06850
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 11.9 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.1 | 10.1 | GO:0009834 | plant-type secondary cell wall biogenesis(GO:0009834) |
| 0.1 | 8.3 | GO:0007018 | microtubule-based movement(GO:0007018) |
| 0.2 | 7.7 | GO:0045489 | pectin biosynthetic process(GO:0045489) |
| 0.2 | 7.6 | GO:0005992 | trehalose biosynthetic process(GO:0005992) |
| 0.4 | 7.4 | GO:0009768 | photosynthesis, light harvesting in photosystem I(GO:0009768) |
| 0.0 | 7.2 | GO:0055114 | oxidation-reduction process(GO:0055114) |
| 0.3 | 6.4 | GO:0009612 | response to mechanical stimulus(GO:0009612) |
| 0.3 | 6.3 | GO:0000038 | very long-chain fatty acid metabolic process(GO:0000038) |
| 0.2 | 6.3 | GO:0080022 | primary root development(GO:0080022) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 44.8 | GO:0005576 | extracellular region(GO:0005576) |
| 0.1 | 37.4 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 0.2 | 28.9 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.1 | 22.8 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.2 | 19.3 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.3 | 17.3 | GO:0031977 | thylakoid lumen(GO:0031977) |
| 0.1 | 13.1 | GO:0009534 | chloroplast thylakoid(GO:0009534) |
| 0.1 | 7.3 | GO:0099503 | secretory vesicle(GO:0099503) |
| 0.1 | 7.2 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
| 0.1 | 6.9 | GO:0005615 | extracellular space(GO:0005615) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 14.0 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 0.2 | 11.9 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.5 | 11.6 | GO:0102336 | 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
| 0.4 | 10.7 | GO:0016168 | chlorophyll binding(GO:0016168) |
| 0.0 | 9.9 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.3 | 9.6 | GO:0047262 | polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262) |
| 0.2 | 9.5 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 0.1 | 8.6 | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity(GO:0003755) |
| 0.2 | 8.2 | GO:0005200 | structural constituent of cytoskeleton(GO:0005200) |
| 0.3 | 7.6 | GO:0004805 | trehalose-phosphatase activity(GO:0004805) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.3 | 5.4 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.2 | 3.1 | PID FANCONI PATHWAY | Fanconi anemia pathway |
| 0.2 | 1.7 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
| 0.2 | 1.2 | PID HDAC CLASSII PATHWAY | Signaling events mediated by HDAC Class II |
| 0.1 | 0.8 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
| 0.2 | 0.7 | PID ENDOTHELIN PATHWAY | Endothelins |
| 0.1 | 0.5 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.1 | 0.3 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.1 | 0.2 | PID ARF 3PATHWAY | Arf1 pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 5.2 | REACTOME DEVELOPMENTAL BIOLOGY | Genes involved in Developmental Biology |
| 0.2 | 4.8 | REACTOME ACTIVATION OF ATR IN RESPONSE TO REPLICATION STRESS | Genes involved in Activation of ATR in response to replication stress |
| 0.5 | 3.0 | REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT | Genes involved in Lipid digestion, mobilization, and transport |
| 0.1 | 1.2 | REACTOME PEPTIDE CHAIN ELONGATION | Genes involved in Peptide chain elongation |
| 0.2 | 0.9 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
| 0.1 | 0.9 | REACTOME MEIOTIC RECOMBINATION | Genes involved in Meiotic Recombination |
| 0.2 | 0.7 | REACTOME DOWNSTREAM SIGNAL TRANSDUCTION | Genes involved in Downstream signal transduction |
| 0.1 | 0.6 | REACTOME HOMOLOGOUS RECOMBINATION REPAIR OF REPLICATION INDEPENDENT DOUBLE STRAND BREAKS | Genes involved in Homologous recombination repair of replication-independent double-strand breaks |
| 0.1 | 0.5 | REACTOME GLUCOSE TRANSPORT | Genes involved in Glucose transport |
| 0.1 | 0.4 | REACTOME CITRIC ACID CYCLE TCA CYCLE | Genes involved in Citric acid cycle (TCA cycle) |