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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT1G06180
Z-value: 0.64
Transcription factors associated with AT1G06180
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G06180
|
AT1G06180 | myb domain protein 13 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| MYB13 | arTal_v1_Chr1_+_1889362_1889362 | -0.14 | 4.9e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_+_14215473_14215473 Show fit | 1.30 |
AT4G28780.1
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
|
| arTal_v1_Chr5_+_4488476_4488476 Show fit | 1.28 |
AT5G13930.1
|
Chalcone and stilbene synthase family protein |
|
| arTal_v1_Chr1_-_20648891_20648891 Show fit | 1.26 |
AT1G55330.1
|
arabinogalactan protein 21 |
|
| arTal_v1_Chr2_-_17827648_17827648 Show fit | 1.20 |
AT2G42840.1
|
protodermal factor 1 |
|
| arTal_v1_Chr3_-_8589754_8589754 Show fit | 1.19 |
AT3G23810.1
|
S-adenosyl-l-homocysteine (SAH) hydrolase 2 |
|
| arTal_v1_Chr5_+_18528267_18528267 Show fit | 1.18 |
AT5G45670.1
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
|
| arTal_v1_Chr2_-_9062093_9062093 Show fit | 1.17 |
AT2G21140.1
|
proline-rich protein 2 |
|
| arTal_v1_Chr3_-_7796310_7796460 Show fit | 1.08 |
AT3G22120.1
AT3G22120.2 |
cell wall-plasma membrane linker protein |
|
| arTal_v1_Chr4_+_14304921_14304921 Show fit | 1.05 |
AT4G29020.2
AT4G29020.1 |
glycine-rich protein |
|
| arTal_v1_Chr1_+_27452748_27452766 Show fit | 0.99 |
AT1G72970.1
AT1G72970.2 |
Glucose-methanol-choline (GMC) oxidoreductase family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G06180
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 2.8 | GO:0010143 | cutin biosynthetic process(GO:0010143) |
| 0.1 | 2.7 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.2 | 2.6 | GO:2000122 | negative regulation of stomatal complex development(GO:2000122) |
| 0.0 | 2.0 | GO:0007267 | cell-cell signaling(GO:0007267) |
| 0.0 | 1.7 | GO:0010927 | pollen wall assembly(GO:0010208) cellular component assembly involved in morphogenesis(GO:0010927) extracellular matrix assembly(GO:0085029) |
| 0.0 | 1.5 | GO:2000652 | regulation of secondary cell wall biogenesis(GO:2000652) |
| 0.0 | 1.5 | GO:0072596 | protein targeting to chloroplast(GO:0045036) establishment of protein localization to chloroplast(GO:0072596) |
| 0.0 | 1.5 | GO:0009664 | plant-type cell wall organization(GO:0009664) |
| 0.3 | 1.4 | GO:0080094 | response to trehalose-6-phosphate(GO:0080094) |
| 0.2 | 1.4 | GO:0033319 | UDP-D-xylose metabolic process(GO:0033319) UDP-D-xylose biosynthetic process(GO:0033320) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 6.1 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 4.8 | GO:0048046 | apoplast(GO:0048046) |
| 0.0 | 3.3 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.0 | 3.3 | GO:0030312 | cell wall(GO:0005618) external encapsulating structure(GO:0030312) |
| 0.1 | 2.8 | GO:0010319 | stromule(GO:0010319) |
| 0.3 | 1.2 | GO:0010330 | cellulose synthase complex(GO:0010330) |
| 0.0 | 1.1 | GO:0015935 | small ribosomal subunit(GO:0015935) |
| 0.2 | 0.9 | GO:0009897 | external side of plasma membrane(GO:0009897) |
| 0.2 | 0.7 | GO:0010316 | pyrophosphate-dependent phosphofructokinase complex(GO:0010316) |
| 0.1 | 0.7 | GO:0031429 | box H/ACA snoRNP complex(GO:0031429) box H/ACA RNP complex(GO:0072588) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 2.7 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.1 | 2.5 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
| 0.5 | 2.3 | GO:0031957 | very long-chain fatty acid-CoA ligase activity(GO:0031957) |
| 0.1 | 1.9 | GO:0005199 | structural constituent of cell wall(GO:0005199) |
| 0.4 | 1.4 | GO:0045548 | phenylalanine ammonia-lyase activity(GO:0045548) |
| 0.3 | 1.4 | GO:0004001 | adenosine kinase activity(GO:0004001) |
| 0.1 | 1.4 | GO:0048040 | UDP-glucuronate decarboxylase activity(GO:0048040) |
| 0.4 | 1.3 | GO:0045430 | chalcone isomerase activity(GO:0045430) |
| 0.3 | 1.3 | GO:0008705 | 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity(GO:0003871) methionine synthase activity(GO:0008705) 5-methyltetrahydrofolate-dependent methyltransferase activity(GO:0042084) 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity(GO:0042085) |
| 0.0 | 1.3 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 2.5 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.1 | 0.6 | PID ATM PATHWAY | ATM pathway |
| 0.0 | 0.3 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
| 0.0 | 0.2 | PID TELOMERASE PATHWAY | Regulation of Telomerase |
| 0.0 | 0.1 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
| 0.0 | 0.1 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
| 0.0 | 0.1 | PID CXCR4 PATHWAY | CXCR4-mediated signaling events |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 2.4 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.1 | 0.7 | REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT | Genes involved in Lipid digestion, mobilization, and transport |
| 0.1 | 0.3 | REACTOME MITOTIC PROMETAPHASE | Genes involved in Mitotic Prometaphase |
| 0.1 | 0.3 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.0 | 0.2 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.0 | 0.2 | REACTOME MEIOTIC RECOMBINATION | Genes involved in Meiotic Recombination |
| 0.0 | 0.1 | REACTOME REGULATION OF HYPOXIA INDUCIBLE FACTOR HIF BY OXYGEN | Genes involved in Regulation of Hypoxia-inducible Factor (HIF) by Oxygen |