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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT1G02250
Z-value: 1.20
Transcription factors associated with AT1G02250
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G02250
|
AT1G02250 | NAC domain containing protein 5 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| NAC005 | arTal_v1_Chr1_-_439559_439559 | -0.70 | 3.9e-05 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_-_197974_197974 Show fit | 4.40 |
AT3G01500.1
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr3_-_198160_198160 Show fit | 4.36 |
AT3G01500.2
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr3_-_198664_198664 Show fit | 4.34 |
AT3G01500.3
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr3_-_197564_197564 Show fit | 4.28 |
AT3G01500.4
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr1_+_3157501_3157501 Show fit | 4.26 |
AT1G09750.1
|
Eukaryotic aspartyl protease family protein |
|
| arTal_v1_Chr3_+_5556710_5556710 Show fit | 4.06 |
AT3G16370.1
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
|
| arTal_v1_Chr4_+_18291218_18291218 Show fit | 3.79 |
AT4G39330.1
AT4G39330.2 |
cinnamyl alcohol dehydrogenase 9 |
|
| arTal_v1_Chr1_-_20648891_20648891 Show fit | 3.67 |
AT1G55330.1
|
arabinogalactan protein 21 |
|
| arTal_v1_Chr2_-_17648945_17649062 Show fit | 3.65 |
AT2G42380.1
AT2G42380.4 AT2G42380.3 AT2G42380.2 AT2G42380.5 |
Basic-leucine zipper (bZIP) transcription factor family protein |
|
| arTal_v1_Chr1_+_28053030_28053030 Show fit | 3.41 |
AT1G74670.1
|
Gibberellin-regulated family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G02250
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.4 | 18.4 | GO:2000122 | negative regulation of stomatal complex development(GO:2000122) |
| 0.3 | 17.3 | GO:0015995 | chlorophyll biosynthetic process(GO:0015995) |
| 0.2 | 14.9 | GO:0007018 | microtubule-based movement(GO:0007018) |
| 0.1 | 11.1 | GO:0009834 | plant-type secondary cell wall biogenesis(GO:0009834) |
| 0.7 | 10.1 | GO:0015977 | carbon fixation(GO:0015977) reductive pentose-phosphate cycle(GO:0019253) |
| 0.5 | 9.7 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.3 | 8.8 | GO:0042335 | cuticle development(GO:0042335) |
| 0.1 | 8.6 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.1 | 8.5 | GO:0015979 | photosynthesis(GO:0015979) |
| 0.1 | 7.6 | GO:0009657 | plastid organization(GO:0009657) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 33.7 | GO:0005576 | extracellular region(GO:0005576) |
| 0.8 | 32.6 | GO:0010319 | stromule(GO:0010319) |
| 0.1 | 30.0 | GO:0009535 | chloroplast thylakoid membrane(GO:0009535) |
| 0.1 | 29.2 | GO:0048046 | apoplast(GO:0048046) |
| 0.4 | 27.0 | GO:0031977 | thylakoid lumen(GO:0031977) |
| 0.1 | 21.4 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.0 | 17.7 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 0.1 | 9.3 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.8 | 6.9 | GO:0009503 | thylakoid light-harvesting complex(GO:0009503) PSII associated light-harvesting complex II(GO:0009517) light-harvesting complex(GO:0030076) |
| 1.3 | 6.7 | GO:0010007 | magnesium chelatase complex(GO:0010007) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 16.4 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
| 0.2 | 15.9 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 0.1 | 14.7 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 0.2 | 13.0 | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity(GO:0003755) |
| 0.3 | 7.3 | GO:0102338 | 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
| 0.9 | 7.1 | GO:0033946 | xyloglucan-specific endo-beta-1,4-glucanase activity(GO:0033946) |
| 0.3 | 7.1 | GO:0052716 | hydroquinone:oxygen oxidoreductase activity(GO:0052716) |
| 2.3 | 6.9 | GO:0051738 | xanthophyll binding(GO:0051738) |
| 1.1 | 6.7 | GO:0051002 | magnesium chelatase activity(GO:0016851) ligase activity, forming nitrogen-metal bonds(GO:0051002) ligase activity, forming nitrogen-metal bonds, forming coordination complexes(GO:0051003) |
| 0.3 | 6.4 | GO:0016168 | chlorophyll binding(GO:0016168) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 2.2 | 17.4 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 1.1 | 4.4 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.4 | 1.6 | PID MYC REPRESS PATHWAY | Validated targets of C-MYC transcriptional repression |
| 0.2 | 1.6 | PID FANCONI PATHWAY | Fanconi anemia pathway |
| 0.3 | 1.4 | PID BARD1 PATHWAY | BARD1 signaling events |
| 0.3 | 1.1 | PID HIF2PATHWAY | HIF-2-alpha transcription factor network |
| 0.2 | 0.9 | PID ATM PATHWAY | ATM pathway |
| 0.4 | 0.8 | PID AURORA A PATHWAY | Aurora A signaling |
| 0.2 | 0.8 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
| 0.2 | 0.7 | PID BCR 5PATHWAY | BCR signaling pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 2.9 | 17.4 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.2 | 4.1 | REACTOME DEVELOPMENTAL BIOLOGY | Genes involved in Developmental Biology |
| 0.1 | 3.0 | REACTOME PEPTIDE CHAIN ELONGATION | Genes involved in Peptide chain elongation |
| 0.5 | 2.1 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.5 | 2.1 | REACTOME GLUCOSE METABOLISM | Genes involved in Glucose metabolism |
| 0.5 | 1.6 | REACTOME SIGNALING BY TGF BETA RECEPTOR COMPLEX | Genes involved in Signaling by TGF-beta Receptor Complex |
| 0.2 | 1.6 | REACTOME REPAIR SYNTHESIS FOR GAP FILLING BY DNA POL IN TC NER | Genes involved in Repair synthesis for gap-filling by DNA polymerase in TC-NER |
| 0.3 | 1.3 | REACTOME GOLGI ASSOCIATED VESICLE BIOGENESIS | Genes involved in Golgi Associated Vesicle Biogenesis |
| 0.2 | 1.2 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
| 0.2 | 1.0 | REACTOME HOMOLOGOUS RECOMBINATION REPAIR OF REPLICATION INDEPENDENT DOUBLE STRAND BREAKS | Genes involved in Homologous recombination repair of replication-independent double-strand breaks |