Project
GSE43616: Time-course of wild-type Arabidopsis leaf
Navigation
Downloads
Results for AT1G01720
Z-value: 6.18
Transcription factors associated with AT1G01720
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G01720
|
AT1G01720 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| ATAF1 | arTal_v1_Chr1_+_267993_267993 | 0.98 | 5.8e-20 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_15983199_15983199 Show fit | 33.29 |
AT3G44300.1
|
nitrilase 2 |
|
| arTal_v1_Chr5_-_15825566_15825566 Show fit | 31.26 |
AT5G39520.1
|
hypothetical protein (DUF1997) |
|
| arTal_v1_Chr1_+_30150897_30151006 Show fit | 28.55 |
AT1G80160.3
AT1G80160.1 AT1G80160.2 |
Lactoylglutathione lyase / glyoxalase I family protein |
|
| arTal_v1_Chr3_+_22935510_22935510 Show fit | 27.29 |
AT3G61930.1
|
hypothetical protein |
|
| arTal_v1_Chr2_-_18781973_18781973 Show fit | 26.18 |
AT2G45570.1
|
cytochrome P450, family 76, subfamily C, polypeptide 2 |
|
| arTal_v1_Chr1_-_27548282_27548282 Show fit | 26.01 |
AT1G73260.1
|
kunitz trypsin inhibitor 1 |
|
| arTal_v1_Chr3_-_162905_162905 Show fit | 25.68 |
AT3G01420.1
|
Peroxidase superfamily protein |
|
| arTal_v1_Chr3_-_3197457_3197457 Show fit | 25.37 |
AT3G10320.1
|
Glycosyltransferase family 61 protein |
|
| arTal_v1_Chr2_+_18641563_18641563 Show fit | 25.06 |
AT2G45210.1
|
SAUR-like auxin-responsive protein family |
|
| arTal_v1_Chr4_+_8908763_8908879 Show fit | 24.92 |
AT4G15610.1
AT4G15610.2 |
Uncharacterized protein family (UPF0497) |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G01720
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.8 | 224.9 | GO:0007568 | aging(GO:0007568) |
| 0.9 | 182.9 | GO:0036294 | cellular response to decreased oxygen levels(GO:0036294) cellular response to oxygen levels(GO:0071453) cellular response to hypoxia(GO:0071456) |
| 0.8 | 75.5 | GO:0010200 | response to chitin(GO:0010200) |
| 1.9 | 75.3 | GO:0002237 | response to molecule of bacterial origin(GO:0002237) |
| 1.6 | 72.0 | GO:0002239 | response to oomycetes(GO:0002239) |
| 13.2 | 66.1 | GO:0051091 | positive regulation of sequence-specific DNA binding transcription factor activity(GO:0051091) |
| 0.2 | 66.1 | GO:0030163 | protein catabolic process(GO:0030163) |
| 6.5 | 64.9 | GO:0001676 | long-chain fatty acid metabolic process(GO:0001676) |
| 6.8 | 60.9 | GO:0051410 | detoxification of nitrogen compound(GO:0051410) |
| 1.4 | 58.6 | GO:0009749 | response to glucose(GO:0009749) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 491.1 | GO:0005886 | plasma membrane(GO:0005886) |
| 0.7 | 203.0 | GO:0042579 | peroxisome(GO:0005777) microbody(GO:0042579) |
| 0.4 | 164.3 | GO:0005774 | vacuolar membrane(GO:0005774) |
| 0.9 | 131.6 | GO:0000325 | plant-type vacuole(GO:0000325) |
| 0.0 | 125.1 | GO:0005634 | nucleus(GO:0005634) |
| 0.0 | 82.5 | GO:0005829 | cytosol(GO:0005829) |
| 0.3 | 73.0 | GO:0098791 | Golgi subcompartment(GO:0098791) |
| 0.8 | 71.2 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
| 0.8 | 57.4 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
| 2.5 | 55.1 | GO:0031012 | extracellular matrix(GO:0031012) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.0 | 124.8 | GO:0046982 | protein heterodimerization activity(GO:0046982) |
| 0.7 | 108.3 | GO:0061659 | ubiquitin-like protein ligase activity(GO:0061659) |
| 4.1 | 99.3 | GO:0016702 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen(GO:0016702) |
| 0.8 | 90.6 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 1.1 | 79.1 | GO:0042910 | xenobiotic transporter activity(GO:0042910) |
| 0.3 | 68.7 | GO:0005516 | calmodulin binding(GO:0005516) |
| 1.3 | 66.0 | GO:0030247 | pattern binding(GO:0001871) polysaccharide binding(GO:0030247) |
| 0.9 | 64.9 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
| 3.1 | 59.2 | GO:0016844 | strictosidine synthase activity(GO:0016844) |
| 0.2 | 56.1 | GO:0005506 | iron ion binding(GO:0005506) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 3.9 | 27.4 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
| 4.8 | 14.5 | PID A6B1 A6B4 INTEGRIN PATHWAY | a6b1 and a6b4 Integrin signaling |
| 1.4 | 12.2 | PID CXCR4 PATHWAY | CXCR4-mediated signaling events |
| 1.2 | 9.9 | PID P53 DOWNSTREAM PATHWAY | Direct p53 effectors |
| 9.4 | 9.4 | PID INTEGRIN A9B1 PATHWAY | Alpha9 beta1 integrin signaling events |
| 2.9 | 8.6 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 2.5 | 7.6 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
| 2.2 | 6.7 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
| 1.2 | 4.9 | PID IL4 2PATHWAY | IL4-mediated signaling events |
| 1.5 | 4.6 | PID RAS PATHWAY | Regulation of Ras family activation |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 6.3 | 50.0 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
| 2.6 | 36.2 | REACTOME FATTY ACID TRIACYLGLYCEROL AND KETONE BODY METABOLISM | Genes involved in Fatty acid, triacylglycerol, and ketone body metabolism |
| 2.7 | 16.2 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
| 1.5 | 15.2 | REACTOME G ALPHA I SIGNALLING EVENTS | Genes involved in G alpha (i) signalling events |
| 3.2 | 12.7 | REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS | Genes involved in Glycerophospholipid biosynthesis |
| 2.7 | 10.7 | REACTOME METABOLISM OF NUCLEOTIDES | Genes involved in Metabolism of nucleotides |
| 2.1 | 10.5 | REACTOME RECYCLING OF BILE ACIDS AND SALTS | Genes involved in Recycling of bile acids and salts |
| 2.0 | 10.1 | REACTOME L1CAM INTERACTIONS | Genes involved in L1CAM interactions |
| 2.3 | 9.2 | REACTOME CITRIC ACID CYCLE TCA CYCLE | Genes involved in Citric acid cycle (TCA cycle) |
| 1.4 | 8.2 | REACTOME FORMATION OF INCISION COMPLEX IN GG NER | Genes involved in Formation of incision complex in GG-NER |