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GSE43616: Time-course of wild-type Arabidopsis leaf

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Results for AT1G01250

Z-value: 1.02

Transcription factors associated with AT1G01250

Gene Symbol Gene ID Gene Info
AT1G01250 Integrase-type DNA-binding superfamily protein

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
AT1G01250arTal_v1_Chr1_-_105330_1053300.461.4e-02Click!

Activity profile of AT1G01250 motif

Sorted Z-values of AT1G01250 motif

Promoter Log-likelihood Transcript Gene Gene Info
Chr2_-_18744322 7.08 AT2G45470.1
FASCICLIN-like arabinogalactan protein 8
Chr4_-_7493080 6.29 AT4G12730.1
FASCICLIN-like arabinogalactan 2
Chr3_-_4744263 5.55 AT3G14240.1
Subtilase family protein
Chr1_-_4530222 5.41 AT1G13250.1
galacturonosyltransferase-like 3
Chr2_-_15474717 5.34 AT2G36870.2
AT2G36870.1
xyloglucan endotransglucosylase/hydrolase 32
Chr5_+_4087689 5.32 AT5G12940.1
Leucine-rich repeat (LRR) family protein
Chr2_+_8940833 5.24 AT2G20750.2
AT2G20750.1
expansin B1
Chr5_-_22560461 5.14 AT5G55730.2
AT5G55730.1
FASCICLIN-like arabinogalactan 1
Chr5_-_8916856 5.13 AT5G25610.1
BURP domain-containing protein
Chr2_-_9428170 5.04 AT2G22170.1
Lipase/lipooxygenase, PLAT/LH2 family protein
Chr3_+_23345754 4.88 AT3G63200.1
PATATIN-like protein 9
Chr3_-_8589754 4.81 AT3G23810.1
S-adenosyl-l-homocysteine (SAH) hydrolase 2
Chr5_+_16468327 4.65 AT5G41140.1
AT5G41140.2
Myosin heavy chain-related protein
Chr1_-_6319427 4.64 AT1G18360.1
alpha/beta-Hydrolases superfamily protein
Chr3_-_2334185 4.49 AT3G07320.1
O-Glycosyl hydrolases family 17 protein
Chr1_-_21614169 4.42 AT1G58270.1
TRAF-like family protein
Chr4_-_16806830 4.26 AT4G35320.1
hypothetical protein
Chr1_+_28428671 4.26 AT1G75710.1
C2H2-like zinc finger protein
Chr1_+_1136078 4.23 AT1G04250.1
AUX/IAA transcriptional regulator family protein
Chr2_+_1676999 4.21 AT2G04780.2
FASCICLIN-like arabinoogalactan 7
Chr5_-_24990331 4.18 AT5G62220.1
glycosyltransferase 18
Chr2_+_1676717 4.10 AT2G04780.1
FASCICLIN-like arabinoogalactan 7
Chr4_-_13958107 4.09 AT4G28080.1
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr1_+_23911024 4.01 AT1G64390.1
glycosyl hydrolase 9C2
Chr5_-_990630 4.00 AT5G03760.1
Nucleotide-diphospho-sugar transferases superfamily protein
Chr4_-_17181261 3.92 AT4G36360.2
beta-galactosidase 3
Chr4_-_17181466 3.90 AT4G36360.1
beta-galactosidase 3
Chr3_+_11252807 3.89 AT3G29320.1
Glycosyl transferase, family 35
Chr4_+_160643 3.89 AT4G00360.1
cytochrome P450, family 86, subfamily A, polypeptide 2
Chr3_-_5252697 3.62 AT3G15520.1
AT3G15520.2
AT3G15520.3
Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
Chr3_+_7280792 3.61 AT3G20820.1
Leucine-rich repeat (LRR) family protein
Chr1_-_1768837 3.56 AT1G05850.2
AT1G05850.1
Chitinase family protein
Chr1_-_28581315 3.46 AT1G76160.1
SKU5 similar 5
Chr5_+_24667873 3.32 AT5G61350.1
Protein kinase superfamily protein
Chr1_-_1307973 3.28 AT1G04680.1
Pectin lyase-like superfamily protein
Chr4_-_11785937 3.27 AT4G22290.1
Ubiquitin-specific protease family C19-related protein
Chr3_-_427095 3.26 AT3G02250.1
O-fucosyltransferase family protein
Chr4_-_10278794 3.17 AT4G18670.1
Leucine-rich repeat (LRR) family protein
Chr3_+_6105908 3.10 AT3G17840.1
receptor-like kinase 902
Chr3_+_10505711 3.08 AT3G28180.1
Cellulose-synthase-like C4
Chr1_-_18869933 3.03 AT1G50910.1
hypothetical protein
Chr1_-_8559066 2.99 AT1G24170.1
Nucleotide-diphospho-sugar transferases superfamily protein
Chr2_+_8987584 2.98 AT2G20890.1
photosystem II reaction center PSB29 protein
Chr4_+_11907355 2.95 AT4G22620.1
SAUR-like auxin-responsive protein family
Chr1_+_28458691 2.89 AT1G75800.1
Pathogenesis-related thaumatin superfamily protein
Chr1_-_7040231 2.83 AT1G20330.1
sterol methyltransferase 2
Chr3_-_5252506 2.81 AT3G15520.4
Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
Chr2_-_12685145 2.79 AT2G29670.2
AT2G29670.1
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr1_-_20357879 2.73 AT1G54500.1
Rubredoxin-like superfamily protein
Chr2_+_19109513 2.63 AT2G46535.1
hypothetical protein
Chr3_-_7434743 2.60 AT3G21190.1
O-fucosyltransferase family protein
Chr5_+_72292 2.60 AT5G01190.2
AT5G01190.1
laccase 10
Chr1_-_6860376 2.58 AT1G19835.1
AT1G19835.4
AT1G19835.6
AT1G19835.3
filament-like protein (DUF869)
Chr4_+_15875342 2.55 AT4G32890.1
GATA transcription factor 9
Chr3_+_3011780 2.45 AT3G09820.1
adenosine kinase 1
Chr1_+_9996713 2.45 AT1G28440.1
HAESA-like 1
Chr1_+_7680390 2.43 AT1G21880.2
AT1G21880.1
lysm domain GPI-anchored protein 1 precursor
Chr3_+_3012094 2.41 AT3G09820.2
adenosine kinase 1
Chr3_-_21805335 2.39 AT3G59010.1
pectin methylesterase 61
Chr5_+_13934108 2.36 AT5G35760.1
Beta-galactosidase related protein
Chr5_+_2063414 2.34 AT5G06700.1
trichome birefringence-like protein (DUF828)
Chr1_+_29345851 2.30 AT1G78040.2
Pollen Ole e 1 allergen and extensin family protein
Chr1_+_29345662 2.29 AT1G78040.3
Pollen Ole e 1 allergen and extensin family protein
Chr5_+_17697842 2.26 AT5G43990.4
AT5G43990.10
AT5G43990.7
AT5G43990.6
AT5G43990.1
AT5G43990.11
AT5G43990.9
AT5G43990.8
AT5G43990.17
AT5G43990.13
AT5G43990.12
AT5G43990.15
AT5G43990.16
AT5G43990.14
AT5G43990.3
AT5G43990.2
SET-domain containing protein lysine methyltransferase family protein
Chr1_-_6859908 2.24 AT1G19835.2
filament-like protein (DUF869)
Chr5_-_17185032 2.23 AT5G42860.1
late embryogenesis abundant protein, group 2
Chr3_+_21238223 2.23 AT3G57400.1
transmembrane protein
Chr1_-_6860059 2.23 AT1G19835.5
filament-like protein (DUF869)
Chr1_+_1198303 2.23 AT1G04430.3
AT1G04430.2
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr1_-_8501542 2.22 AT1G24020.1
MLP-like protein 423
Chr1_-_27298649 2.21 AT1G72500.3
AT1G72500.2
AT1G72500.1
inter alpha-trypsin inhibitor, heavy chain-like protein
Chr1_+_29344539 2.21 AT1G78040.1
Pollen Ole e 1 allergen and extensin family protein
Chr1_+_1197956 2.16 AT1G04430.1
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr1_+_21241579 2.16 AT1G56670.1
AT1G56670.2
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr4_-_75384 2.15 AT4G00180.2
Plant-specific transcription factor YABBY family protein
Chr5_-_1145008 2.14 AT5G04160.1
Nucleotide-sugar transporter family protein
Chr5_-_22422649 2.13 AT5G55280.1
homolog of bacterial cytokinesis Z-ring protein FTSZ 1-1
Chr4_-_75576 2.12 AT4G00180.1
Plant-specific transcription factor YABBY family protein
Chr5_-_17893067 2.11 AT5G44410.1
FAD-binding Berberine family protein
Chr2_+_17507343 2.11 AT2G41940.1
zinc finger protein 8
Chr1_-_25514601 2.11 AT1G68060.1
microtubule-associated proteins 70-1
Chr3_-_5777841 2.09 AT3G16920.1
chitinase-like protein
Chr5_+_5935038 2.09 AT5G17920.1
AT5G17920.2
Cobalamin-independent synthase family protein
Chr5_-_5766246 2.09 AT5G17490.1
RGA-like protein 3
Chr1_-_8502065 2.09 AT1G24020.2
MLP-like protein 423
Chr3_-_5778052 2.02 AT3G16920.2
chitinase-like protein
Chr5_-_21154395 1.99 AT5G52060.1
BCL-2-associated athanogene 1
Chr2_+_18262189 1.98 AT2G44160.1
methylenetetrahydrofolate reductase 2
Chr1_+_19812087 1.96 AT1G53163.1
membrane-associated kinase regulator
Chr1_+_20061405 1.93 AT1G53730.2
AT1G53730.1
STRUBBELIG-receptor family 6
Chr3_+_6797471 1.92 AT3G19570.2
AT3G19570.3
AT3G19570.4
AT3G19570.1
SNOWY COTYLEDON protein (DUF566)
Chr1_+_4274531 1.91 AT1G12550.1
D-isomer specific 2-hydroxyacid dehydrogenase family protein
Chr2_-_5675995 1.91 AT2G13610.1
ABC-2 type transporter family protein
Chr2_+_10072057 1.86 AT2G23690.1
HTH-type transcriptional regulator
Chr4_-_10016039 1.85 AT4G18030.1
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr3_-_5845220 1.84 AT3G17130.1
Plant invertase/pectin methylesterase inhibitor superfamily protein
Chr5_-_4633925 1.83 AT5G14370.1
CCT motif family protein
Chr3_+_8603212 1.79 AT3G23820.1
UDP-D-glucuronate 4-epimerase 6
Chr4_+_14304921 1.77 AT4G29020.2
AT4G29020.1
glycine-rich protein
Chr4_-_1066571 1.76 AT4G02420.1
Concanavalin A-like lectin protein kinase family protein
Chr1_+_1748443 1.67 AT1G05810.1
Rab GTPase-like A5A protein
Chr5_-_21095702 1.66 AT5G51910.1
TCP family transcription factor
Chr1_-_24139303 1.64 AT1G64980.3
AT1G64980.2
AT1G64980.1
Nucleotide-diphospho-sugar transferases superfamily protein
Chr3_+_919362 1.62 AT3G03710.1
polyribonucleotide nucleotidyltransferase
Chr2_+_17627894 1.62 AT2G42320.4
AT2G42320.1
nucleolar protein gar2-like protein
Chr3_-_18863397 1.61 AT3G50750.1
BES1/BZR1 homolog 1
Chr5_-_21095891 1.61 AT5G51910.2
TCP family transcription factor
Chr1_+_1748259 1.59 AT1G05810.2
Rab GTPase-like A5A protein
Chr2_+_17627331 1.57 AT2G42320.2
AT2G42320.3
nucleolar protein gar2-like protein
Chr1_-_1349478 1.56 AT1G04800.1
glycine-rich protein
Chr5_-_18010542 1.56 AT5G44635.2
AT5G44635.1
minichromosome maintenance (MCM2/3/5) family protein
Chr2_+_14003128 1.55 AT2G32990.1
glycosyl hydrolase 9B8
Chr4_-_15646844 1.55 AT4G32410.1
cellulose synthase 1
Chr4_+_13515432 1.53 AT4G26900.1
HIS HF
Chr5_+_6290358 1.53 AT5G18860.1
AT5G18860.2
inosine-uridine preferring nucleoside hydrolase family protein
Chr4_-_1178489 1.53 AT4G02670.1
AT4G02670.2
indeterminate(ID)-domain 12
Chr2_-_15084559 1.51 AT2G35930.1
plant U-box 23
Chr1_-_10314147 1.51 AT1G29470.1
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr1_-_10313755 1.51 AT1G29470.2
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr4_-_6796398 1.50 AT4G11140.1
cytokinin response factor 1
Chr1_-_21178974 1.50 AT1G56520.2
AT1G56520.5
AT1G56520.1
AT1G56520.3
AT1G56520.4
Disease resistance protein (TIR-NBS-LRR class) family
Chr2_+_15501726 1.49 AT2G36910.1
ATP binding cassette subfamily B1
Chr5_-_2055485 1.48 AT5G06670.1
AT5G06670.5
AT5G06670.8
AT5G06670.3
AT5G06670.2
AT5G06670.7
AT5G06670.4
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr4_-_14635921 1.47 AT4G29920.1
Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein
Chr5_-_10282614 1.47 AT5G28290.3
AT5G28290.2
NIMA-related kinase 3
Chr4_-_8165214 1.47 AT4G14150.1
phragmoplast-associated kinesin-related protein 1
Chr4_+_13830827 1.46 AT4G27720.1
Major facilitator superfamily protein
Chr4_+_1101378 1.45 AT4G02500.1
UDP-xylosyltransferase 2
Chr2_+_9406059 1.44 AT2G22125.1
binding protein
Chr2_-_7685176 1.44 AT2G17695.2
AT2G17695.1
AT2G17695.3
outer envelope protein
Chr1_+_95935 1.43 AT1G01225.1
NC domain-containing protein-like protein
Chr2_+_15972876 1.43 AT2G38120.1
AT2G38120.2
Transmembrane amino acid transporter family protein
Chr5_+_17806397 1.43 AT5G44210.1
erf domain protein 9
Chr4_-_14636101 1.41 AT4G29920.2
Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein
Chr1_-_20339769 1.38 AT1G54450.1
Calcium-binding EF-hand family protein
Chr4_-_7174439 1.37 AT4G11950.1
transmembrane protein, putative (DUF1191)
Chr1_-_24324064 1.37 AT1G65470.2
AT1G65470.1
chromatin assembly factor-1 (FASCIATA1) (FAS1)
Chr5_-_7903899 1.37 AT5G23440.1
ferredoxin/thioredoxin reductase subunit A (variable subunit) 1
Chr1_-_25022542 1.35 AT1G67040.1
DnaA initiator-associating protein
Chr1_-_25022704 1.33 AT1G67040.2
DnaA initiator-associating protein
Chr1_-_25678468 1.32 AT1G68470.1
Exostosin family protein
Chr2_+_7271674 1.32 AT2G16750.1
kinase with adenine nucleotide alpha hydrolases-like domain-containing protein
Chr2_-_13747810 1.31 AT2G32380.1
Transmembrane protein 97, Putative
Chr1_+_2032338 1.31 AT1G06640.3
AT1G06640.2
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr5_-_21044194 1.31 AT5G51795.1
DNA/RNA-binding protein Kin17, conserved region
Chr4_-_16168711 1.30 AT4G33660.1
cysteine-rich TM module stress tolerance protein
Chr3_+_19271347 1.28 AT3G51930.1
Transducin/WD40 repeat-like superfamily protein
Chr4_+_5899629 1.28 AT4G09300.5
LisH and RanBPM domains containing protein
Chr3_+_2534776 1.27 AT3G07960.1
AT3G07960.3
AT3G07960.2
AT3G07960.4
Phosphatidylinositol-4-phosphate 5-kinase family protein
Chr5_-_20200468 1.24 AT5G49720.1
glycosyl hydrolase 9A1
Chr4_-_10585758 1.24 AT4G19410.1
AT4G19410.2
Pectinacetylesterase family protein
Chr1_-_5684909 1.24 AT1G16630.1
transmembrane protein
Chr5_+_3799408 1.22 AT5G11790.2
AT5G11790.1
N-MYC downregulated-like 2
Chr1_+_6927736 1.20 AT1G19960.1
transcription factor
Chr3_+_6710349 1.19 AT3G19370.3
AT3G19370.1
filament-like protein (DUF869)
Chr3_-_1822858 1.18 AT3G06030.1
NPK1-related protein kinase 3
Chr2_-_10030443 1.17 AT2G23560.1
methyl esterase 7
Chr5_+_24620884 1.17 AT5G61200.2
AT5G61200.1
myosin heavy chain-like protein
Chr3_+_6710720 1.16 AT3G19370.2
filament-like protein (DUF869)
Chr2_+_7271012 1.16 AT2G16750.2
kinase with adenine nucleotide alpha hydrolases-like domain-containing protein
Chr5_-_1894124 1.16 AT5G06250.2
AT5G06250.1
AT5G06250.3
AT5G06250.4
AT5G06250.5
AP2/B3-like transcriptional factor family protein
Chr4_+_8344349 1.13 AT4G14540.1
nuclear factor Y, subunit B3
Chr2_-_5169185 1.13 AT2G12646.3
AT2G12646.2
AT2G12646.1
PLATZ transcription factor family protein
Chr1_-_6562786 1.13 AT1G19000.1
AT1G19000.2
Homeodomain-like superfamily protein
Chr5_-_26970668 1.13 AT5G67640.1
hypothetical protein
Chr1_+_2031626 1.11 AT1G06640.1
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr1_+_8877790 1.11 AT1G25320.1
Leucine-rich repeat protein kinase family protein
Chr2_-_18956582 1.11 AT2G46110.1
ketopantoate hydroxymethyltransferase 1
Chr1_+_4760957 1.10 AT1G13930.1
AT1G13930.2
AT1G13930.3
oleosin-B3-like protein
Chr5_+_19763110 1.10 AT5G48730.1
Pentatricopeptide repeat (PPR) superfamily protein
Chr1_+_11356076 1.09 AT1G31720.2
AT1G31720.4
AT1G31720.3
AT1G31720.5
AT1G31720.6
AT1G31720.1
AT1G31720.7
chitin synthase, putative (DUF1218)
Chr5_+_324428 1.09 AT5G01840.1
ovate family protein 1
Chr3_-_10587759 1.09 AT3G28330.1
F-box family protein-like protein
Chr5_+_533058 1.08 AT5G02450.1
Ribosomal protein L36e family protein
Chr2_-_16690182 1.08 AT2G39980.1
HXXXD-type acyl-transferase family protein
Chr1_+_5398926 1.07 AT1G15690.1
AT1G15690.2
Inorganic H pyrophosphatase family protein
Chr5_-_10282824 1.06 AT5G28290.1
NIMA-related kinase 3
Chr2_+_17747781 1.06 AT2G42610.1
AT2G42610.2
LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640)
Chr1_+_23046768 1.05 AT1G62330.1
O-fucosyltransferase family protein
Chr4_+_11157916 1.05 AT4G20840.1
FAD-binding Berberine family protein
Chr4_-_10464238 1.04 AT4G19120.3
AT4G19120.1
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr5_-_2055019 1.03 AT5G06670.6
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr5_+_454777 1.03 AT5G02250.1
Ribonuclease II/R family protein
Chr4_-_1563395 1.03 AT4G03520.2
Thioredoxin superfamily protein
Chr5_+_24620144 1.02 AT5G61200.3
myosin heavy chain-like protein
Chr3_-_2826922 1.01 AT3G09210.1
plastid transcriptionally active 13
Chr3_+_1161366 1.00 AT3G04380.1
AT3G04380.3
AT3G04380.2
AT3G04380.6
AT3G04380.5
AT3G04380.4
SET-domain containing protein lysine methyltransferase family protein
Chr5_+_24620386 1.00 AT5G61200.4
myosin heavy chain-like protein
Chr1_+_1086170 1.00 AT1G04160.2
AT1G04160.1
myosin XI B
Chr4_-_1564204 0.99 AT4G03520.1
Thioredoxin superfamily protein
Chr1_+_17191362 0.98 AT1G45688.1
AT1G45688.2
transmembrane protein
Chr5_-_26949184 0.98 AT5G67550.1
transmembrane protein
Chr3_-_913677 0.98 AT3G03690.1
AT3G03690.2
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
Chr1_-_9844561 0.97 AT1G28180.2
AT1G28180.1
DEAD-box ATP-dependent RNA helicase-like protein
Chr4_-_10464001 0.97 AT4G19120.2
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr5_-_21903854 0.97 AT5G53950.1
NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
Chr3_+_6546200 0.97 AT3G18980.1
AT3G18980.2
EIN2 targeting protein1
Chr1_-_23267221 0.95 AT1G62830.1
LSD1-like 1
Chr1_+_26464226 0.94 AT1G70270.2
AT1G70270.1
transcription factor
Chr3_-_955212 0.94 AT3G03776.3
AT3G03776.1
AT3G03776.2
hydroxyproline-rich glycoprotein family protein

Network of associatons between targets according to the STRING database.

First level regulatory network of AT1G01250

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
1.2 4.9 GO:0080094 response to trehalose-6-phosphate(GO:0080094)
1.2 4.8 GO:0046498 S-adenosylmethionine cycle(GO:0033353) S-adenosylhomocysteine metabolic process(GO:0046498)
0.8 3.9 GO:0005980 glycogen catabolic process(GO:0005980)
0.8 13.0 GO:0016998 cell wall macromolecule catabolic process(GO:0016998)
0.7 3.0 GO:1902458 positive regulation of stomatal opening(GO:1902458)
0.5 3.2 GO:0097502 mannosylation(GO:0097502)
0.5 1.5 GO:0046085 adenosine metabolic process(GO:0046085)
0.5 1.4 GO:0048729 establishment of planar polarity(GO:0001736) morphogenesis of a polarized epithelium(GO:0001738) morphogenesis of an epithelium(GO:0002009) tissue morphogenesis(GO:0048729)
0.5 1.8 GO:0044380 protein localization to cytoskeleton(GO:0044380) protein localization to microtubule cytoskeleton(GO:0072698)
0.4 1.8 GO:0006063 uronic acid metabolic process(GO:0006063) galacturonate metabolic process(GO:0019586)
0.4 2.1 GO:0051574 positive regulation of histone H3-K9 methylation(GO:0051574)
0.4 1.6 GO:0010322 regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway(GO:0010322) negative regulation of isoprenoid metabolic process(GO:0045827)
0.4 2.7 GO:0043446 cellular alkane metabolic process(GO:0043446)
0.3 4.3 GO:0010158 abaxial cell fate specification(GO:0010158)
0.3 0.9 GO:0045764 positive regulation of cellular amine metabolic process(GO:0033240) positive regulation of cellular amino acid metabolic process(GO:0045764)
0.3 1.5 GO:0045730 respiratory burst involved in defense response(GO:0002679) respiratory burst(GO:0045730)
0.3 5.6 GO:0009969 xyloglucan biosynthetic process(GO:0009969)
0.3 1.5 GO:1902407 assembly of actomyosin apparatus involved in cytokinesis(GO:0000912) phragmoplast assembly(GO:0000914) phragmoplast microtubule organization(GO:0080175) assembly of actomyosin apparatus involved in mitotic cytokinesis(GO:1902407)
0.3 2.8 GO:0032876 negative regulation of DNA endoreduplication(GO:0032876)
0.3 5.2 GO:0006949 syncytium formation(GO:0006949)
0.2 1.4 GO:0031507 heterochromatin assembly(GO:0031507)
0.2 1.3 GO:0000395 mRNA 5'-splice site recognition(GO:0000395)
0.2 1.6 GO:1902969 mitotic DNA replication(GO:1902969)
0.2 1.1 GO:0015939 pantothenate metabolic process(GO:0015939) pantothenate biosynthetic process(GO:0015940)
0.2 1.5 GO:0015689 molybdate ion transport(GO:0015689)
0.2 1.2 GO:0043481 pigment accumulation in response to UV light(GO:0043478) pigment accumulation in tissues in response to UV light(GO:0043479) pigment accumulation in tissues(GO:0043480) anthocyanin accumulation in tissues in response to UV light(GO:0043481)
0.2 2.0 GO:0006662 glycerol ether metabolic process(GO:0006662)
0.2 5.1 GO:0009269 response to desiccation(GO:0009269)
0.2 2.9 GO:1900057 positive regulation of leaf senescence(GO:1900057)
0.2 7.8 GO:0045489 pectin biosynthetic process(GO:0045489)
0.2 4.0 GO:0009292 genetic transfer(GO:0009292) DNA mediated transformation(GO:0009294)
0.2 3.1 GO:0080188 RNA-directed DNA methylation(GO:0080188)
0.1 1.4 GO:1990937 xylan acetylation(GO:1990937)
0.1 0.7 GO:0032011 ARF protein signal transduction(GO:0032011) regulation of ARF protein signal transduction(GO:0032012)
0.1 4.8 GO:0000413 protein peptidyl-prolyl isomerization(GO:0000413)
0.1 1.2 GO:0010358 leaf shaping(GO:0010358)
0.1 2.1 GO:0009938 negative regulation of gibberellic acid mediated signaling pathway(GO:0009938)
0.1 1.1 GO:0052546 cell wall pectin metabolic process(GO:0052546)
0.1 1.9 GO:0042761 very long-chain fatty acid biosynthetic process(GO:0042761)
0.1 1.3 GO:0072583 clathrin-mediated endocytosis(GO:0072583)
0.1 5.6 GO:0016485 protein processing(GO:0016485)
0.1 0.8 GO:1901072 aminoglycan catabolic process(GO:0006026) chitin metabolic process(GO:0006030) chitin catabolic process(GO:0006032) amino sugar catabolic process(GO:0046348) glucosamine-containing compound catabolic process(GO:1901072)
0.1 8.7 GO:0009834 plant-type secondary cell wall biogenesis(GO:0009834)
0.1 2.0 GO:0050821 protein stabilization(GO:0050821)
0.1 1.5 GO:0052803 histidine biosynthetic process(GO:0000105) histidine metabolic process(GO:0006547) imidazole-containing compound metabolic process(GO:0052803)
0.1 3.5 GO:0043622 cortical microtubule organization(GO:0043622)
0.1 1.1 GO:0010115 regulation of abscisic acid biosynthetic process(GO:0010115)
0.1 2.1 GO:0010020 chloroplast fission(GO:0010020) plastid fission(GO:0043572)
0.1 1.8 GO:0009086 methionine biosynthetic process(GO:0009086)
0.1 2.1 GO:0009833 plant-type primary cell wall biogenesis(GO:0009833)
0.1 0.6 GO:0009819 drought recovery(GO:0009819)
0.1 5.7 GO:0045490 pectin catabolic process(GO:0045490)
0.1 0.6 GO:1902100 mitotic spindle assembly checkpoint(GO:0007094) spindle checkpoint(GO:0031577) negative regulation of proteasomal ubiquitin-dependent protein catabolic process(GO:0032435) negative regulation of sister chromatid segregation(GO:0033046) negative regulation of mitotic sister chromatid segregation(GO:0033048) negative regulation of mitotic metaphase/anaphase transition(GO:0045841) negative regulation of chromosome segregation(GO:0051985) spindle assembly checkpoint(GO:0071173) mitotic spindle checkpoint(GO:0071174) negative regulation of proteasomal protein catabolic process(GO:1901799) negative regulation of metaphase/anaphase transition of cell cycle(GO:1902100) negative regulation of proteolysis involved in cellular protein catabolic process(GO:1903051) negative regulation of cellular protein catabolic process(GO:1903363) negative regulation of mitotic sister chromatid separation(GO:2000816)
0.1 0.8 GO:0010274 hydrotropism(GO:0010274)
0.1 0.6 GO:0006513 protein monoubiquitination(GO:0006513)
0.1 1.9 GO:0051225 spindle assembly(GO:0051225)
0.0 0.8 GO:0070413 trehalose metabolism in response to stress(GO:0070413)
0.0 0.3 GO:0080117 secondary growth(GO:0080117)
0.0 2.1 GO:0009832 plant-type cell wall biogenesis(GO:0009832)
0.0 1.2 GO:2000012 regulation of auxin polar transport(GO:2000012)
0.0 0.1 GO:0006424 glutamyl-tRNA aminoacylation(GO:0006424) glutaminyl-tRNA aminoacylation(GO:0006425)
0.0 1.9 GO:0009853 photorespiration(GO:0009853)
0.0 1.0 GO:0030050 vesicle transport along actin filament(GO:0030050) vesicle cytoskeletal trafficking(GO:0099518)
0.0 0.9 GO:0000027 ribosomal large subunit assembly(GO:0000027)
0.0 0.7 GO:0010072 primary shoot apical meristem specification(GO:0010072)
0.0 1.0 GO:0016575 histone deacetylation(GO:0016575)
0.0 0.4 GO:0005987 sucrose catabolic process(GO:0005987)
0.0 1.6 GO:0009846 pollen germination(GO:0009846)
0.0 1.7 GO:0002181 cytoplasmic translation(GO:0002181)
0.0 0.5 GO:0009299 mRNA transcription(GO:0009299)
0.0 0.1 GO:0010500 transmitting tissue development(GO:0010500)
0.0 1.5 GO:0048825 cotyledon development(GO:0048825)
0.0 0.5 GO:0006879 cellular iron ion homeostasis(GO:0006879)
0.0 1.2 GO:0009696 salicylic acid metabolic process(GO:0009696)
0.0 0.3 GO:0015833 oligopeptide transport(GO:0006857) peptide transport(GO:0015833)
0.0 0.4 GO:0010082 regulation of root meristem growth(GO:0010082)
0.0 0.5 GO:0010227 floral organ abscission(GO:0010227)
0.0 1.8 GO:0043086 negative regulation of catalytic activity(GO:0043086)
0.0 0.2 GO:0007143 female meiotic division(GO:0007143)
0.0 2.6 GO:0048511 circadian rhythm(GO:0007623) rhythmic process(GO:0048511)
0.0 1.0 GO:0009567 fertilization(GO:0009566) double fertilization forming a zygote and endosperm(GO:0009567)
0.0 0.0 GO:1902446 regulation of shade avoidance(GO:1902446) positive regulation of shade avoidance(GO:1902448)
0.0 0.5 GO:0045168 cell-cell signaling involved in cell fate commitment(GO:0045168)
0.0 0.2 GO:0080163 regulation of protein serine/threonine phosphatase activity(GO:0080163)
0.0 1.0 GO:0010026 trichome differentiation(GO:0010026)
0.0 0.1 GO:0010244 response to low fluence blue light stimulus by blue low-fluence system(GO:0010244)
0.0 0.1 GO:0006556 S-adenosylmethionine biosynthetic process(GO:0006556)
0.0 2.4 GO:0006631 fatty acid metabolic process(GO:0006631)
0.0 1.3 GO:0009101 protein glycosylation(GO:0006486) glycoprotein biosynthetic process(GO:0009101) macromolecule glycosylation(GO:0043413)
0.0 0.2 GO:0010143 cutin biosynthetic process(GO:0010143)
0.0 1.1 GO:0080167 response to karrikin(GO:0080167)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.5 1.8 GO:1990752 microtubule end(GO:1990752)
0.3 2.1 GO:0032153 cell division site(GO:0032153)
0.2 0.6 GO:0043240 Fanconi anaemia nuclear complex(GO:0043240)
0.2 1.8 GO:0042555 MCM complex(GO:0042555)
0.2 4.6 GO:0055028 cortical microtubule(GO:0055028)
0.2 29.0 GO:0099503 secretory vesicle(GO:0099503)
0.1 12.7 GO:0000138 Golgi trans cisterna(GO:0000138)
0.1 1.9 GO:0005880 nuclear microtubule(GO:0005880)
0.1 6.4 GO:0009543 chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978)
0.1 0.6 GO:0000778 condensed nuclear chromosome kinetochore(GO:0000778) kinetochore microtubule(GO:0005828)
0.1 4.6 GO:0005797 Golgi medial cisterna(GO:0005797)
0.1 1.4 GO:0009986 cell surface(GO:0009986)
0.1 1.4 GO:0031977 thylakoid lumen(GO:0031977)
0.1 1.2 GO:0005769 early endosome(GO:0005769)
0.1 3.0 GO:0010319 stromule(GO:0010319)
0.1 1.4 GO:0016324 apical plasma membrane(GO:0016324)
0.1 1.5 GO:0005871 kinesin complex(GO:0005871)
0.1 0.7 GO:0032588 trans-Golgi network membrane(GO:0032588)
0.1 1.4 GO:0000159 protein phosphatase type 2A complex(GO:0000159)
0.1 1.0 GO:0000178 exosome (RNase complex)(GO:0000178)
0.1 12.8 GO:0048046 apoplast(GO:0048046)
0.0 1.0 GO:0009508 plastid chromosome(GO:0009508)
0.0 6.0 GO:0046658 anchored component of plasma membrane(GO:0046658)
0.0 7.1 GO:0009505 plant-type cell wall(GO:0009505)
0.0 0.7 GO:0000418 DNA-directed RNA polymerase IV complex(GO:0000418)
0.0 0.3 GO:0005832 chaperonin-containing T-complex(GO:0005832)
0.0 4.1 GO:0022625 cytosolic large ribosomal subunit(GO:0022625)
0.0 5.4 GO:0005802 trans-Golgi network(GO:0005802)
0.0 0.9 GO:0015934 large ribosomal subunit(GO:0015934)
0.0 0.1 GO:0009330 DNA topoisomerase complex (ATP-hydrolyzing)(GO:0009330)
0.0 4.7 GO:0009535 chloroplast thylakoid membrane(GO:0009535)
0.0 1.1 GO:0010008 endosome membrane(GO:0010008)
0.0 1.0 GO:0015629 actin cytoskeleton(GO:0015629)
0.0 27.6 GO:0005576 extracellular region(GO:0005576)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
1.6 4.8 GO:0004013 adenosylhomocysteinase activity(GO:0004013) trialkylsulfonium hydrolase activity(GO:0016802)
1.0 3.9 GO:0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity(GO:0008703)
1.0 4.9 GO:0004001 adenosine kinase activity(GO:0004001)
1.0 3.9 GO:0070330 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen(GO:0016712) aromatase activity(GO:0070330)
0.6 1.9 GO:0016618 hydroxypyruvate reductase activity(GO:0016618)
0.6 5.0 GO:0004096 catalase activity(GO:0004096)
0.5 1.6 GO:0043140 ATP-dependent 3'-5' DNA helicase activity(GO:0043140) single-stranded DNA-dependent ATP-dependent 3'-5' DNA helicase activity(GO:1990518)
0.5 1.5 GO:0004359 glutaminase activity(GO:0004359)
0.4 2.1 GO:0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity(GO:0003871) methionine synthase activity(GO:0008705) 5-methyltetrahydrofolate-dependent methyltransferase activity(GO:0042084) 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity(GO:0042085)
0.4 1.5 GO:0047724 inosine nucleosidase activity(GO:0047724)
0.4 1.1 GO:0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity(GO:0003864)
0.4 2.9 GO:0010328 auxin influx transmembrane transporter activity(GO:0010328)
0.4 8.5 GO:0004568 chitinase activity(GO:0004568)
0.3 4.0 GO:0047259 glucomannan 4-beta-mannosyltransferase activity(GO:0047259)
0.3 7.8 GO:0004565 beta-galactosidase activity(GO:0004565)
0.3 1.8 GO:0050378 UDP-glucuronate 4-epimerase activity(GO:0050378)
0.3 1.4 GO:0033843 xyloglucan 6-xylosyltransferase activity(GO:0033843)
0.3 8.2 GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262)
0.3 5.2 GO:0016759 cellulose synthase activity(GO:0016759)
0.2 2.6 GO:0047134 protein-disulfide reductase activity(GO:0047134)
0.2 0.9 GO:0016882 cyclo-ligase activity(GO:0016882)
0.2 4.5 GO:0004864 protein phosphatase inhibitor activity(GO:0004864)
0.2 2.0 GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor(GO:0016646)
0.2 1.1 GO:0009678 hydrogen-translocating pyrophosphatase activity(GO:0009678)
0.2 1.5 GO:0015098 molybdate ion transmembrane transporter activity(GO:0015098)
0.2 1.9 GO:0009979 16:0 monogalactosyldiacylglycerol desaturase activity(GO:0009979)
0.2 5.6 GO:0008810 cellulase activity(GO:0008810)
0.2 2.0 GO:0000774 adenyl-nucleotide exchange factor activity(GO:0000774)
0.2 2.7 GO:0000175 3'-5'-exoribonuclease activity(GO:0000175)
0.2 5.3 GO:0016762 xyloglucan:xyloglucosyl transferase activity(GO:0016762)
0.2 5.9 GO:0045735 nutrient reservoir activity(GO:0045735)
0.1 3.2 GO:0019187 beta-1,4-mannosyltransferase activity(GO:0019187) mannan synthase activity(GO:0051753)
0.1 1.5 GO:0008574 ATP-dependent microtubule motor activity, plus-end-directed(GO:0008574)
0.1 3.3 GO:0030570 carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570)
0.1 0.4 GO:0051010 microtubule plus-end binding(GO:0051010)
0.1 2.6 GO:0052716 hydroquinone:oxygen oxidoreductase activity(GO:0052716)
0.1 4.2 GO:0018024 histone-lysine N-methyltransferase activity(GO:0018024)
0.1 0.8 GO:0022833 mechanically-gated ion channel activity(GO:0008381) mechanically gated channel activity(GO:0022833)
0.1 1.3 GO:0016308 1-phosphatidylinositol-4-phosphate 5-kinase activity(GO:0016308)
0.1 2.7 GO:0008378 galactosyltransferase activity(GO:0008378)
0.1 1.2 GO:0004709 MAP kinase kinase kinase activity(GO:0004709)
0.1 4.8 GO:0003755 peptidyl-prolyl cis-trans isomerase activity(GO:0003755)
0.1 0.7 GO:0005086 ARF guanyl-nucleotide exchange factor activity(GO:0005086)
0.1 1.2 GO:0080032 methyl salicylate esterase activity(GO:0080031) methyl jasmonate esterase activity(GO:0080032)
0.0 0.8 GO:0003825 alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity(GO:0003825)
0.0 0.8 GO:0015386 potassium:proton antiporter activity(GO:0015386)
0.0 2.4 GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors(GO:0016706)
0.0 0.1 GO:0004819 glutamine-tRNA ligase activity(GO:0004819)
0.0 2.5 GO:0046910 pectinesterase inhibitor activity(GO:0046910)
0.0 0.1 GO:0016985 mannan endo-1,4-beta-mannosidase activity(GO:0016985)
0.0 1.0 GO:0030898 microfilament motor activity(GO:0000146) actin-dependent ATPase activity(GO:0030898)
0.0 0.4 GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity(GO:0033926)
0.0 0.7 GO:0005199 structural constituent of cell wall(GO:0005199)
0.0 0.5 GO:0005381 iron ion transmembrane transporter activity(GO:0005381)
0.0 0.2 GO:0004834 tryptophan synthase activity(GO:0004834)
0.0 3.0 GO:0004252 serine-type endopeptidase activity(GO:0004252)
0.0 0.3 GO:0048040 UDP-glucuronate decarboxylase activity(GO:0048040)
0.0 0.2 GO:0090447 glycerol-3-phosphate 2-O-acyltransferase activity(GO:0090447)
0.0 0.6 GO:0051219 protein phosphorylated amino acid binding(GO:0045309) phosphoprotein binding(GO:0051219)
0.0 3.0 GO:0019001 GTP binding(GO:0005525) guanyl nucleotide binding(GO:0019001) guanyl ribonucleotide binding(GO:0032561)
0.0 2.8 GO:0008017 microtubule binding(GO:0008017)
0.0 2.8 GO:0008757 S-adenosylmethionine-dependent methyltransferase activity(GO:0008757)
0.0 0.7 GO:0004707 MAP kinase activity(GO:0004707)
0.0 4.9 GO:0003735 structural constituent of ribosome(GO:0003735)
0.0 0.8 GO:0004190 aspartic-type endopeptidase activity(GO:0004190)
0.0 0.9 GO:0003678 DNA helicase activity(GO:0003678)
0.0 0.6 GO:0003714 transcription corepressor activity(GO:0003714)
0.0 0.7 GO:0003899 DNA-directed RNA polymerase activity(GO:0003899)
0.0 1.0 GO:0003724 RNA helicase activity(GO:0003724)
0.0 0.1 GO:0004478 methionine adenosyltransferase activity(GO:0004478)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 2.0 PID AP1 PATHWAY AP-1 transcription factor network
0.3 0.9 PID PI3KCI PATHWAY Class I PI3K signaling events
0.2 1.5 PID HIF1 TFPATHWAY HIF-1-alpha transcription factor network

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.5 1.5 REACTOME ABACAVIR TRANSPORT AND METABOLISM Genes involved in Abacavir transport and metabolism
0.3 1.9 REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT Genes involved in Lipid digestion, mobilization, and transport
0.3 1.8 REACTOME UNWINDING OF DNA Genes involved in Unwinding of DNA