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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT5G67580
Z-value: 1.64
Transcription factors associated with AT5G67580
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G67580
|
AT5G67580 | Homeodomain-like/winged-helix DNA-binding family protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| TRB2 | arTal_v1_Chr5_-_26957725_26957774 | 0.54 | 4.7e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_+_5206156_5206156 Show fit | 2.70 |
AT5G15950.2
|
Adenosylmethionine decarboxylase family protein |
|
| arTal_v1_Chr5_+_5205869_5205869 Show fit | 2.68 |
AT5G15950.1
|
Adenosylmethionine decarboxylase family protein |
|
| arTal_v1_Chr4_-_7401951_7401951 Show fit | 2.66 |
AT4G12470.1
|
azelaic acid induced 1 |
|
| arTal_v1_Chr5_-_22712441_22712441 Show fit | 2.58 |
AT5G56080.1
|
nicotianamine synthase 2 |
|
| arTal_v1_Chr5_-_14753088_14753088 Show fit | 2.30 |
AT5G37260.1
|
Homeodomain-like superfamily protein |
|
| arTal_v1_Chr3_-_8085669_8085669 Show fit | 1.96 |
AT3G22840.1
|
Chlorophyll A-B binding family protein |
|
| arTal_v1_Chr1_-_1248826_1248876 Show fit | 1.83 |
AT1G04570.2
AT1G04570.1 |
Major facilitator superfamily protein |
|
| arTal_v1_Chr1_-_18238497_18238497 Show fit | 1.66 |
AT1G49310.1
|
transmembrane protein |
|
| arTal_v1_Chr5_-_6725966_6725966 Show fit | 1.66 |
AT5G19890.1
|
Peroxidase superfamily protein |
|
| arTal_v1_Chr3_-_82182_82182 Show fit | 1.60 |
AT3G01260.1
|
Galactose mutarotase-like superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G67580
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 12.1 | GO:0006412 | translation(GO:0006412) |
| 0.3 | 9.0 | GO:0000027 | ribosomal large subunit assembly(GO:0000027) |
| 0.1 | 5.5 | GO:0042274 | ribosomal small subunit biogenesis(GO:0042274) |
| 0.1 | 4.7 | GO:0042254 | ribosome biogenesis(GO:0042254) |
| 0.0 | 4.1 | GO:0000398 | RNA splicing, via transesterification reactions(GO:0000375) RNA splicing, via transesterification reactions with bulged adenosine as nucleophile(GO:0000377) mRNA splicing, via spliceosome(GO:0000398) |
| 0.2 | 3.9 | GO:0000470 | maturation of LSU-rRNA(GO:0000470) |
| 0.1 | 3.8 | GO:0045036 | protein targeting to chloroplast(GO:0045036) establishment of protein localization to chloroplast(GO:0072596) |
| 0.1 | 3.1 | GO:0000413 | protein peptidyl-prolyl isomerization(GO:0000413) |
| 0.1 | 3.0 | GO:0048510 | regulation of timing of meristematic phase transition(GO:0048506) regulation of timing of transition from vegetative to reproductive phase(GO:0048510) |
| 0.1 | 2.9 | GO:0009631 | cold acclimation(GO:0009631) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 21.7 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
| 0.1 | 16.8 | GO:0005730 | nucleolus(GO:0005730) |
| 0.1 | 10.6 | GO:0022627 | cytosolic small ribosomal subunit(GO:0022627) |
| 0.0 | 7.4 | GO:0005774 | vacuolar membrane(GO:0005774) |
| 0.1 | 7.2 | GO:0009707 | chloroplast outer membrane(GO:0009707) |
| 0.1 | 5.0 | GO:0000790 | nuclear chromatin(GO:0000790) |
| 0.4 | 4.1 | GO:0031428 | box C/D snoRNP complex(GO:0031428) |
| 0.3 | 3.5 | GO:0005832 | chaperonin-containing T-complex(GO:0005832) |
| 0.1 | 3.4 | GO:0032040 | small-subunit processome(GO:0032040) |
| 0.1 | 2.9 | GO:0005665 | DNA-directed RNA polymerase II, core complex(GO:0005665) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 23.7 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.0 | 16.9 | GO:0044822 | mRNA binding(GO:0003729) poly(A) RNA binding(GO:0044822) |
| 0.0 | 8.2 | GO:0003723 | RNA binding(GO:0003723) |
| 0.1 | 6.8 | GO:0003724 | RNA helicase activity(GO:0003724) |
| 0.0 | 5.4 | GO:0008270 | zinc ion binding(GO:0008270) |
| 0.1 | 5.2 | GO:0051082 | unfolded protein binding(GO:0051082) |
| 0.2 | 4.5 | GO:0030515 | snoRNA binding(GO:0030515) |
| 0.0 | 4.4 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.0 | 4.2 | GO:0016887 | ATPase activity(GO:0016887) |
| 0.1 | 3.9 | GO:0043621 | protein self-association(GO:0043621) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 1.5 | SIG PIP3 SIGNALING IN CARDIAC MYOCTES | Genes related to PIP3 signaling in cardiac myocytes |
| 0.3 | 1.1 | PID VEGF VEGFR PATHWAY | VEGF and VEGFR signaling network |
| 0.3 | 1.0 | ST B CELL ANTIGEN RECEPTOR | B Cell Antigen Receptor |
| 0.2 | 0.8 | PID BETA CATENIN NUC PATHWAY | Regulation of nuclear beta catenin signaling and target gene transcription |
| 0.1 | 0.7 | PID HDAC CLASSI PATHWAY | Signaling events mediated by HDAC Class I |
| 0.1 | 0.7 | PID ATR PATHWAY | ATR signaling pathway |
| 0.5 | 0.5 | PID RAS PATHWAY | Regulation of Ras family activation |
| 0.5 | 0.5 | PID TCPTP PATHWAY | Signaling events mediated by TCPTP |
| 0.2 | 0.5 | PID A6B1 A6B4 INTEGRIN PATHWAY | a6b1 and a6b4 Integrin signaling |
| 0.1 | 0.4 | PID IL2 PI3K PATHWAY | IL2 signaling events mediated by PI3K |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 3.3 | REACTOME NONSENSE MEDIATED DECAY ENHANCED BY THE EXON JUNCTION COMPLEX | Genes involved in Nonsense Mediated Decay Enhanced by the Exon Junction Complex |
| 0.7 | 2.7 | REACTOME RECRUITMENT OF MITOTIC CENTROSOME PROTEINS AND COMPLEXES | Genes involved in Recruitment of mitotic centrosome proteins and complexes |
| 0.1 | 1.6 | REACTOME METABOLISM OF LIPIDS AND LIPOPROTEINS | Genes involved in Metabolism of lipids and lipoproteins |
| 0.4 | 1.2 | REACTOME GLYCOSPHINGOLIPID METABOLISM | Genes involved in Glycosphingolipid metabolism |
| 0.3 | 1.1 | REACTOME VEGF LIGAND RECEPTOR INTERACTIONS | Genes involved in VEGF ligand-receptor interactions |
| 0.2 | 1.1 | REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT | Genes involved in Lipid digestion, mobilization, and transport |
| 0.2 | 1.0 | REACTOME HOST INTERACTIONS OF HIV FACTORS | Genes involved in Host Interactions of HIV factors |
| 0.1 | 1.0 | REACTOME ASSOCIATION OF TRIC CCT WITH TARGET PROTEINS DURING BIOSYNTHESIS | Genes involved in Association of TriC/CCT with target proteins during biosynthesis |
| 0.3 | 0.8 | REACTOME NRAGE SIGNALS DEATH THROUGH JNK | Genes involved in NRAGE signals death through JNK |
| 0.3 | 0.8 | REACTOME CYCLIN E ASSOCIATED EVENTS DURING G1 S TRANSITION | Genes involved in Cyclin E associated events during G1/S transition |