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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT5G67190
Z-value: 0.79
Transcription factors associated with AT5G67190
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G67190
|
AT5G67190 | DREB and EAR motif protein 2 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| DEAR2 | arTal_v1_Chr5_-_26810116_26810116 | 0.11 | 7.1e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_-_19036938_19036938 Show fit | 1.29 |
AT5G46890.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr4_-_7421828_7421828 Show fit | 1.25 |
AT4G12520.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr3_-_1758807_1758807 Show fit | 1.06 |
AT3G05890.1
|
Low temperature and salt responsive protein family |
|
| arTal_v1_Chr3_-_8007836_8007836 Show fit | 1.06 |
AT3G22600.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr5_-_3172701_3172701 Show fit | 0.90 |
AT5G10130.1
|
Pollen Ole e 1 allergen and extensin family protein |
|
| arTal_v1_Chr1_+_10991478_10991478 Show fit | 0.87 |
AT1G30870.1
|
Peroxidase superfamily protein |
|
| arTal_v1_Chr5_-_17831336_17831336 Show fit | 0.85 |
AT5G44260.1
|
Zinc finger C-x8-C-x5-C-x3-H type family protein |
|
| arTal_v1_Chr3_-_2130451_2130451 Show fit | 0.84 |
AT3G06750.1
|
hydroxyproline-rich glycoprotein family protein |
|
| arTal_v1_Chr2_+_16463347_16463347 Show fit | 0.81 |
AT2G39430.1
|
Disease resistance-responsive (dirigent-like protein) family protein |
|
| arTal_v1_Chr3_-_7656053_7656053 Show fit | 0.78 |
AT3G21720.1
|
isocitrate lyase |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G67190
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 3.6 | GO:0010200 | response to chitin(GO:0010200) |
| 0.0 | 1.9 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.1 | 1.8 | GO:0003333 | amino acid transmembrane transport(GO:0003333) |
| 0.0 | 1.7 | GO:0045492 | xylan biosynthetic process(GO:0045492) |
| 0.0 | 1.4 | GO:0009834 | plant-type secondary cell wall biogenesis(GO:0009834) |
| 0.1 | 1.2 | GO:0009423 | chorismate biosynthetic process(GO:0009423) |
| 0.0 | 1.1 | GO:2000012 | regulation of auxin polar transport(GO:2000012) |
| 0.1 | 1.0 | GO:0009901 | anther dehiscence(GO:0009901) |
| 0.0 | 1.0 | GO:0031408 | oxylipin biosynthetic process(GO:0031408) |
| 0.0 | 1.0 | GO:0002239 | response to oomycetes(GO:0002239) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 10.7 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 3.2 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.0 | 2.7 | GO:0005615 | extracellular space(GO:0005615) |
| 0.2 | 1.4 | GO:0031588 | nucleotide-activated protein kinase complex(GO:0031588) |
| 0.0 | 1.4 | GO:0010008 | endosome membrane(GO:0010008) |
| 0.1 | 1.0 | GO:0000326 | storage vacuole(GO:0000322) protein storage vacuole(GO:0000326) |
| 0.3 | 0.9 | GO:0009514 | glyoxysome(GO:0009514) |
| 0.3 | 0.8 | GO:0043668 | pollen wall(GO:0043667) exine(GO:0043668) sexine(GO:0043673) columella(GO:0043674) |
| 0.0 | 0.8 | GO:0090406 | pollen tube(GO:0090406) |
| 0.2 | 0.7 | GO:0009925 | basal plasma membrane(GO:0009925) basolateral plasma membrane(GO:0016323) basal part of cell(GO:0045178) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 2.8 | GO:0030599 | pectinesterase activity(GO:0030599) |
| 0.1 | 2.0 | GO:0005199 | structural constituent of cell wall(GO:0005199) |
| 0.1 | 1.7 | GO:0052716 | hydroquinone:oxygen oxidoreductase activity(GO:0052716) |
| 0.0 | 1.6 | GO:0009055 | electron carrier activity(GO:0009055) |
| 0.4 | 1.2 | GO:0003849 | 3-deoxy-7-phosphoheptulonate synthase activity(GO:0003849) |
| 0.3 | 1.1 | GO:1901982 | disaccharide binding(GO:0048030) maltose binding(GO:1901982) |
| 0.2 | 1.1 | GO:0016629 | 12-oxophytodienoate reductase activity(GO:0016629) |
| 0.1 | 1.0 | GO:0016833 | oxo-acid-lyase activity(GO:0016833) |
| 0.0 | 1.0 | GO:0004568 | chitinase activity(GO:0004568) |
| 0.1 | 0.9 | GO:0018685 | alkane 1-monooxygenase activity(GO:0018685) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.5 | PID ECADHERIN NASCENT AJ PATHWAY | E-cadherin signaling in the nascent adherens junction |
| 0.0 | 0.1 | PID MYC PATHWAY | C-MYC pathway |
| 0.0 | 0.1 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.0 | 0.1 | PID RAC1 PATHWAY | RAC1 signaling pathway |
| 0.0 | 0.1 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 0.6 | REACTOME PREFOLDIN MEDIATED TRANSFER OF SUBSTRATE TO CCT TRIC | Genes involved in Prefoldin mediated transfer of substrate to CCT/TriC |
| 0.1 | 0.5 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.1 | 0.5 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |
| 0.1 | 0.4 | REACTOME E2F ENABLED INHIBITION OF PRE REPLICATION COMPLEX FORMATION | Genes involved in E2F-enabled inhibition of pre-replication complex formation |
| 0.0 | 0.1 | REACTOME PRE NOTCH EXPRESSION AND PROCESSING | Genes involved in Pre-NOTCH Expression and Processing |
| 0.0 | 0.1 | REACTOME LIPOPROTEIN METABOLISM | Genes involved in Lipoprotein metabolism |
| 0.0 | 0.1 | REACTOME INNATE IMMUNE SYSTEM | Genes involved in Innate Immune System |
| 0.0 | 0.1 | REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS | Genes involved in Sphingolipid de novo biosynthesis |
| 0.0 | 0.0 | REACTOME INTEGRATION OF ENERGY METABOLISM | Genes involved in Integration of energy metabolism |