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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT5G66940
Z-value: 1.53
Transcription factors associated with AT5G66940
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G66940
|
AT5G66940 | Dof-type zinc finger DNA-binding family protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT5G66940 | arTal_v1_Chr5_-_26728715_26728715 | 0.44 | 1.2e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_-_14753088_14753088 Show fit | 2.18 |
AT5G37260.1
|
Homeodomain-like superfamily protein |
|
| arTal_v1_Chr1_+_3019639_3019639 Show fit | 2.00 |
AT1G09350.1
|
galactinol synthase 3 |
|
| arTal_v1_Chr5_+_5205869_5205869 Show fit | 2.00 |
AT5G15950.1
|
Adenosylmethionine decarboxylase family protein |
|
| arTal_v1_Chr3_+_4104463_4104463 Show fit | 1.99 |
AT3G12900.1
|
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
|
| arTal_v1_Chr1_-_10164452_10164452 Show fit | 1.98 |
AT1G29090.1
|
Cysteine proteinases superfamily protein |
|
| arTal_v1_Chr5_+_5206156_5206156 Show fit | 1.97 |
AT5G15950.2
|
Adenosylmethionine decarboxylase family protein |
|
| arTal_v1_Chr5_-_8406132_8406151 Show fit | 1.96 |
AT5G24570.1
AT5G24575.1 |
hypothetical protein hypothetical protein |
|
| arTal_v1_Chr1_+_3020221_3020221 Show fit | 1.94 |
AT1G09350.2
|
galactinol synthase 3 |
|
| arTal_v1_Chr2_+_19151481_19151481 Show fit | 1.92 |
AT2G46650.1
|
cytochrome B5 isoform C |
|
| arTal_v1_Chr4_-_15954803_15954803 Show fit | 1.87 |
AT4G33070.1
|
Thiamine pyrophosphate dependent pyruvate decarboxylase family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G66940
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 6.9 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 0.1 | 6.0 | GO:0007267 | cell-cell signaling(GO:0007267) |
| 0.2 | 4.7 | GO:0042761 | very long-chain fatty acid biosynthetic process(GO:0042761) |
| 0.2 | 4.3 | GO:0006012 | galactose metabolic process(GO:0006012) |
| 0.1 | 4.3 | GO:0006099 | tricarboxylic acid cycle(GO:0006099) citrate metabolic process(GO:0006101) |
| 0.8 | 4.0 | GO:0072708 | response to sorbitol(GO:0072708) |
| 0.2 | 4.0 | GO:0006862 | nucleotide transport(GO:0006862) |
| 0.1 | 4.0 | GO:0006869 | lipid transport(GO:0006869) |
| 0.1 | 3.7 | GO:0034620 | cellular response to unfolded protein(GO:0034620) |
| 0.1 | 3.6 | GO:0009691 | cytokinin biosynthetic process(GO:0009691) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 43.8 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 41.0 | GO:0005739 | mitochondrion(GO:0005739) |
| 0.0 | 35.7 | GO:0005576 | extracellular region(GO:0005576) |
| 0.0 | 22.2 | GO:0005794 | Golgi apparatus(GO:0005794) |
| 0.1 | 11.3 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
| 0.1 | 11.3 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.1 | 9.8 | GO:0000138 | Golgi trans cisterna(GO:0000138) |
| 0.1 | 9.6 | GO:0005789 | endoplasmic reticulum membrane(GO:0005789) |
| 0.1 | 7.6 | GO:0042995 | cell projection(GO:0042995) |
| 0.0 | 6.9 | GO:0048046 | apoplast(GO:0048046) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 8.5 | GO:0009055 | electron carrier activity(GO:0009055) |
| 0.2 | 8.4 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 0.1 | 8.1 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.0 | 7.8 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.4 | 7.0 | GO:0016157 | sucrose synthase activity(GO:0016157) |
| 0.1 | 6.1 | GO:0015171 | amino acid transmembrane transporter activity(GO:0015171) |
| 0.2 | 5.0 | GO:0052716 | hydroquinone:oxygen oxidoreductase activity(GO:0052716) |
| 0.2 | 4.9 | GO:0015562 | efflux transmembrane transporter activity(GO:0015562) |
| 0.0 | 4.2 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 0.1 | 4.0 | GO:0000156 | phosphorelay response regulator activity(GO:0000156) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 1.9 | NABA SECRETED FACTORS | Genes encoding secreted soluble factors |
| 0.2 | 1.6 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
| 0.1 | 1.1 | PID CXCR4 PATHWAY | CXCR4-mediated signaling events |
| 0.3 | 1.0 | PID MYC PATHWAY | C-MYC pathway |
| 0.3 | 0.8 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.2 | 0.7 | PID IL8 CXCR2 PATHWAY | IL8- and CXCR2-mediated signaling events |
| 0.1 | 0.6 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.1 | 0.5 | PID ERA GENOMIC PATHWAY | Validated nuclear estrogen receptor alpha network |
| 0.1 | 0.5 | ST FAS SIGNALING PATHWAY | Fas Signaling Pathway |
| 0.1 | 0.5 | PID RAC1 PATHWAY | RAC1 signaling pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 2.4 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.2 | 2.0 | REACTOME ASSOCIATION OF LICENSING FACTORS WITH THE PRE REPLICATIVE COMPLEX | Genes involved in Association of licensing factors with the pre-replicative complex |
| 0.4 | 1.5 | REACTOME LOSS OF NLP FROM MITOTIC CENTROSOMES | Genes involved in Loss of Nlp from mitotic centrosomes |
| 0.2 | 1.2 | REACTOME MHC CLASS II ANTIGEN PRESENTATION | Genes involved in MHC class II antigen presentation |
| 0.4 | 1.1 | REACTOME NEUROTRANSMITTER RECEPTOR BINDING AND DOWNSTREAM TRANSMISSION IN THE POSTSYNAPTIC CELL | Genes involved in Neurotransmitter Receptor Binding And Downstream Transmission In The Postsynaptic Cell |
| 0.2 | 1.1 | REACTOME PROLACTIN RECEPTOR SIGNALING | Genes involved in Prolactin receptor signaling |
| 0.2 | 1.1 | REACTOME INTERFERON SIGNALING | Genes involved in Interferon Signaling |
| 0.1 | 1.0 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
| 0.3 | 0.9 | REACTOME DEADENYLATION OF MRNA | Genes involved in Deadenylation of mRNA |
| 0.2 | 0.7 | REACTOME REGULATION OF INSULIN SECRETION | Genes involved in Regulation of Insulin Secretion |