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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT5G66700
Z-value: 1.56
Transcription factors associated with AT5G66700
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G66700
|
AT5G66700 | homeobox 53 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| HB53 | arTal_v1_Chr5_+_26634275_26634275 | -0.80 | 5.9e-04 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_+_6826587_6826587 Show fit | 2.96 |
AT4G11190.1
|
Disease resistance-responsive (dirigent-like protein) family protein |
|
| arTal_v1_Chr4_-_14827211_14827211 Show fit | 2.83 |
AT4G30280.1
|
xyloglucan endotransglucosylase/hydrolase 18 |
|
| arTal_v1_Chr5_+_19434758_19434758 Show fit | 2.83 |
AT5G47990.1
|
cytochrome P450, family 705, subfamily A, polypeptide 5 |
|
| arTal_v1_Chr4_+_2449434_2449434 Show fit | 2.79 |
AT4G04840.1
|
methionine sulfoxide reductase B6 |
|
| arTal_v1_Chr5_+_9200271_9200271 Show fit | 2.72 |
AT5G26260.1
|
TRAF-like family protein |
|
| arTal_v1_Chr5_+_16441808_16441808 Show fit | 2.45 |
AT5G41080.2
|
PLC-like phosphodiesterases superfamily protein |
|
| arTal_v1_Chr5_+_1119937_1119937 Show fit | 2.42 |
AT5G04120.1
|
Phosphoglycerate mutase family protein |
|
| arTal_v1_Chr5_+_16441655_16441655 Show fit | 2.41 |
AT5G41080.1
|
PLC-like phosphodiesterases superfamily protein |
|
| arTal_v1_Chr4_-_7421828_7421828 Show fit | 2.36 |
AT4G12520.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr5_-_19036938_19036938 Show fit | 2.35 |
AT5G46890.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G66700
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 12.8 | GO:0010200 | response to chitin(GO:0010200) |
| 0.2 | 9.9 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 0.1 | 7.9 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.2 | 6.4 | GO:0030091 | protein repair(GO:0030091) |
| 1.5 | 5.8 | GO:0080003 | thalianol metabolic process(GO:0080003) |
| 0.3 | 5.6 | GO:0042343 | indole glucosinolate metabolic process(GO:0042343) |
| 1.2 | 4.9 | GO:0046475 | glycerophospholipid catabolic process(GO:0046475) |
| 0.1 | 4.3 | GO:0016126 | sterol biosynthetic process(GO:0016126) |
| 0.2 | 3.9 | GO:0046688 | response to copper ion(GO:0046688) |
| 0.6 | 3.4 | GO:0006567 | threonine catabolic process(GO:0006567) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 82.9 | GO:0005576 | extracellular region(GO:0005576) |
| 0.1 | 30.8 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 11.1 | GO:0048046 | apoplast(GO:0048046) |
| 0.0 | 8.4 | GO:0005783 | endoplasmic reticulum(GO:0005783) |
| 0.0 | 7.2 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.1 | 3.4 | GO:0005811 | lipid particle(GO:0005811) |
| 0.0 | 3.4 | GO:0030312 | cell wall(GO:0005618) external encapsulating structure(GO:0030312) |
| 0.1 | 2.1 | GO:0005764 | lysosome(GO:0005764) |
| 0.0 | 1.8 | GO:0009705 | plant-type vacuole membrane(GO:0009705) |
| 0.1 | 1.5 | GO:0000322 | storage vacuole(GO:0000322) protein storage vacuole(GO:0000326) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 8.2 | GO:0030599 | pectinesterase activity(GO:0030599) |
| 0.1 | 6.9 | GO:0004601 | peroxidase activity(GO:0004601) |
| 0.6 | 6.2 | GO:0033743 | peptide-methionine (R)-S-oxide reductase activity(GO:0033743) |
| 0.7 | 5.8 | GO:0033946 | xyloglucan-specific endo-beta-1,4-glucanase activity(GO:0033946) |
| 0.0 | 5.8 | GO:0005507 | copper ion binding(GO:0005507) |
| 0.3 | 5.6 | GO:0052716 | hydroquinone:oxygen oxidoreductase activity(GO:0052716) |
| 0.0 | 5.6 | GO:0016709 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen(GO:0016709) |
| 0.3 | 5.2 | GO:0015250 | water transmembrane transporter activity(GO:0005372) water channel activity(GO:0015250) |
| 0.3 | 4.6 | GO:0008889 | glycerophosphodiester phosphodiesterase activity(GO:0008889) |
| 0.2 | 4.4 | GO:0102338 | 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 1.9 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
| 0.5 | 1.6 | SA CASPASE CASCADE | Apoptosis is mediated by caspases, cysteine proteases arranged in a proteolytic cascade. |
| 0.4 | 1.3 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.4 | 1.2 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
| 0.2 | 0.7 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.1 | 0.4 | PID VEGF VEGFR PATHWAY | VEGF and VEGFR signaling network |
| 0.1 | 0.3 | PID SMAD2 3NUCLEAR PATHWAY | Regulation of nuclear SMAD2/3 signaling |
| 0.1 | 0.2 | PID IL8 CXCR2 PATHWAY | IL8- and CXCR2-mediated signaling events |
| 0.1 | 0.2 | PID AJDISS 2PATHWAY | Posttranslational regulation of adherens junction stability and dissassembly |
| 0.0 | 0.2 | PID CXCR4 PATHWAY | CXCR4-mediated signaling events |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 1.2 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.2 | 1.2 | REACTOME MHC CLASS II ANTIGEN PRESENTATION | Genes involved in MHC class II antigen presentation |
| 0.3 | 1.0 | REACTOME APOPTOSIS INDUCED DNA FRAGMENTATION | Genes involved in Apoptosis induced DNA fragmentation |
| 0.1 | 1.0 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.1 | 0.8 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |
| 0.2 | 0.6 | REACTOME SEMAPHORIN INTERACTIONS | Genes involved in Semaphorin interactions |
| 0.1 | 0.4 | REACTOME GASTRIN CREB SIGNALLING PATHWAY VIA PKC AND MAPK | Genes involved in Gastrin-CREB signalling pathway via PKC and MAPK |
| 0.1 | 0.4 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
| 0.1 | 0.3 | REACTOME METABOLISM OF NUCLEOTIDES | Genes involved in Metabolism of nucleotides |
| 0.0 | 0.3 | REACTOME TRANSCRIPTIONAL REGULATION OF WHITE ADIPOCYTE DIFFERENTIATION | Genes involved in Transcriptional Regulation of White Adipocyte Differentiation |