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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT5G65510
Z-value: 0.96
Transcription factors associated with AT5G65510
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G65510
|
AT5G65510 | AINTEGUMENTA-like 7 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AIL7 | arTal_v1_Chr5_+_26185829_26185829 | -0.72 | 3.6e-03 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_-_2260089_2260187 Show fit | 1.22 |
AT1G07350.6
AT1G07350.3 AT1G07350.2 AT1G07350.5 AT1G07350.4 AT1G07350.1 |
RNA-binding (RRM/RBD/RNP motifs) family protein |
|
| arTal_v1_Chr4_+_13391293_13391344 Show fit | 1.17 |
AT4G26530.2
AT4G26530.1 |
Aldolase superfamily protein |
|
| arTal_v1_Chr4_+_13390754_13390754 Show fit | 1.14 |
AT4G26530.3
|
Aldolase superfamily protein |
|
| arTal_v1_Chr2_+_3618058_3618058 Show fit | 0.96 |
AT2G08986.1
|
hypothetical protein |
|
| arTal_v1_Chr1_+_6697874_6697874 Show fit | 0.85 |
AT1G19380.1
|
sugar, putative (DUF1195) |
|
| arTal_v1_Chr5_+_2680401_2680401 Show fit | 0.68 |
AT5G08330.1
|
TCP family transcription factor |
|
| arTal_v1_Chr3_-_7656053_7656053 Show fit | 0.68 |
AT3G21720.1
|
isocitrate lyase |
|
| arTal_v1_Chr4_-_16583075_16583075 Show fit | 0.65 |
AT4G34760.1
|
SAUR-like auxin-responsive protein family |
|
| arTal_v1_Chr1_+_4934120_4934120 Show fit | 0.61 |
AT1G14430.1
|
glyoxal oxidase-related protein |
|
| arTal_v1_Chr1_-_17252452_17252452 Show fit | 0.59 |
AT1G46552.1
|
|
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G65510
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 2.3 | GO:0030388 | fructose 1,6-bisphosphate metabolic process(GO:0030388) |
| 0.1 | 1.9 | GO:0009556 | microsporogenesis(GO:0009556) |
| 0.4 | 1.2 | GO:0050685 | positive regulation of RNA splicing(GO:0033120) positive regulation of mRNA processing(GO:0050685) |
| 0.2 | 0.7 | GO:0006097 | glyoxylate cycle(GO:0006097) |
| 0.0 | 0.6 | GO:0019915 | lipid storage(GO:0019915) |
| 0.0 | 0.6 | GO:0010109 | regulation of photosynthesis(GO:0010109) |
| 0.2 | 0.5 | GO:0010213 | non-photoreactive DNA repair(GO:0010213) |
| 0.1 | 0.5 | GO:0098849 | phytochelatin metabolic process(GO:0046937) phytochelatin biosynthetic process(GO:0046938) cellular response to cadmium ion(GO:0071276) cellular detoxification of cadmium ion(GO:0098849) |
| 0.0 | 0.5 | GO:1901071 | glucosamine-containing compound metabolic process(GO:1901071) |
| 0.1 | 0.4 | GO:0090059 | protoxylem development(GO:0090059) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 0.7 | GO:0009514 | glyoxysome(GO:0009514) |
| 0.0 | 0.4 | GO:0005779 | integral component of peroxisomal membrane(GO:0005779) intrinsic component of peroxisomal membrane(GO:0031231) |
| 0.1 | 0.3 | GO:0048476 | Holliday junction resolvase complex(GO:0048476) |
| 0.0 | 0.3 | GO:0031011 | Ino80 complex(GO:0031011) DNA helicase complex(GO:0033202) |
| 0.0 | 0.3 | GO:0000148 | 1,3-beta-D-glucan synthase complex(GO:0000148) |
| 0.0 | 0.2 | GO:0005685 | U1 snRNP(GO:0005685) |
| 0.0 | 0.1 | GO:0031932 | TORC2 complex(GO:0031932) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 3.0 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.2 | 2.3 | GO:0004332 | fructose-bisphosphate aldolase activity(GO:0004332) |
| 0.1 | 1.1 | GO:0048256 | flap endonuclease activity(GO:0048256) |
| 0.1 | 0.7 | GO:0016833 | oxo-acid-lyase activity(GO:0016833) |
| 0.1 | 0.6 | GO:0004838 | L-tyrosine:2-oxoglutarate aminotransferase activity(GO:0004838) L-tyrosine aminotransferase activity(GO:0070547) |
| 0.1 | 0.6 | GO:0008381 | mechanically-gated ion channel activity(GO:0008381) mechanically gated channel activity(GO:0022833) |
| 0.1 | 0.6 | GO:0016464 | chloroplast protein-transporting ATPase activity(GO:0016464) |
| 0.1 | 0.5 | GO:0003830 | beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity(GO:0003830) |
| 0.0 | 0.5 | GO:0005089 | Rho guanyl-nucleotide exchange factor activity(GO:0005089) |
| 0.0 | 0.4 | GO:0016756 | glutathione gamma-glutamylcysteinyltransferase activity(GO:0016756) |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.2 | REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION | Genes involved in Antigen processing: Ubiquitination & Proteasome degradation |