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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT5G65410
Z-value: 1.92
Transcription factors associated with AT5G65410
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G65410
|
AT5G65410 | homeobox protein 25 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| HB25 | arTal_v1_Chr5_+_26136002_26136002 | -0.84 | 1.5e-04 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_+_6826587_6826587 Show fit | 3.86 |
AT4G11190.1
|
Disease resistance-responsive (dirigent-like protein) family protein |
|
| arTal_v1_Chr5_+_16441808_16441808 Show fit | 3.81 |
AT5G41080.2
|
PLC-like phosphodiesterases superfamily protein |
|
| arTal_v1_Chr5_+_16441655_16441655 Show fit | 3.77 |
AT5G41080.1
|
PLC-like phosphodiesterases superfamily protein |
|
| arTal_v1_Chr5_+_19434758_19434758 Show fit | 3.64 |
AT5G47990.1
|
cytochrome P450, family 705, subfamily A, polypeptide 5 |
|
| arTal_v1_Chr4_-_14827211_14827211 Show fit | 3.35 |
AT4G30280.1
|
xyloglucan endotransglucosylase/hydrolase 18 |
|
| arTal_v1_Chr5_-_19036938_19036938 Show fit | 3.23 |
AT5G46890.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr1_-_27569823_27569823 Show fit | 3.16 |
AT1G73330.1
|
drought-repressed 4 |
|
| arTal_v1_Chr3_-_11194897_11194993 Show fit | 3.16 |
AT3G29250.2
AT3G29250.1 |
NAD(P)-binding Rossmann-fold superfamily protein |
|
| arTal_v1_Chr3_-_197974_197974 Show fit | 3.07 |
AT3G01500.1
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr5_+_19428888_19428888 Show fit | 3.07 |
AT5G47980.1
|
HXXXD-type acyl-transferase family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G65410
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 46.7 | GO:0010200 | response to chitin(GO:0010200) |
| 0.1 | 13.3 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 1.0 | 13.2 | GO:2000122 | negative regulation of stomatal complex development(GO:2000122) |
| 0.2 | 12.2 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 0.3 | 10.9 | GO:0016126 | sterol biosynthetic process(GO:0016126) |
| 0.1 | 9.8 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.4 | 8.3 | GO:0042343 | indole glucosinolate metabolic process(GO:0042343) |
| 0.0 | 8.0 | GO:0048868 | pollen tube development(GO:0048868) |
| 0.1 | 7.8 | GO:0007267 | cell-cell signaling(GO:0007267) |
| 1.9 | 7.7 | GO:0046475 | glycerophospholipid catabolic process(GO:0046475) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 185.7 | GO:0005576 | extracellular region(GO:0005576) |
| 0.2 | 48.1 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.4 | 15.0 | GO:0010319 | stromule(GO:0010319) |
| 0.3 | 6.6 | GO:0012511 | monolayer-surrounded lipid storage body(GO:0012511) |
| 0.5 | 5.2 | GO:0048226 | Casparian strip(GO:0048226) |
| 0.2 | 4.7 | GO:0005811 | lipid particle(GO:0005811) |
| 0.1 | 4.5 | GO:0005764 | lysosome(GO:0005764) |
| 0.8 | 4.1 | GO:0035061 | interchromatin granule(GO:0035061) |
| 0.3 | 2.9 | GO:0000326 | storage vacuole(GO:0000322) protein storage vacuole(GO:0000326) |
| 0.1 | 2.5 | GO:0071010 | U2-type prespliceosome(GO:0071004) prespliceosome(GO:0071010) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 15.8 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 0.4 | 13.6 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
| 0.3 | 11.2 | GO:0008171 | O-methyltransferase activity(GO:0008171) |
| 1.1 | 8.9 | GO:0033946 | xyloglucan-specific endo-beta-1,4-glucanase activity(GO:0033946) |
| 0.4 | 8.8 | GO:0052716 | hydroquinone:oxygen oxidoreductase activity(GO:0052716) |
| 0.3 | 8.7 | GO:0005179 | hormone activity(GO:0005179) |
| 0.6 | 8.3 | GO:0008889 | glycerophosphodiester phosphodiesterase activity(GO:0008889) |
| 0.1 | 7.2 | GO:0009055 | electron carrier activity(GO:0009055) |
| 0.4 | 7.0 | GO:0005372 | water transmembrane transporter activity(GO:0005372) water channel activity(GO:0015250) |
| 0.0 | 6.9 | GO:0008134 | transcription factor binding(GO:0008134) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.5 | 11.8 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.7 | 4.3 | PID CASPASE PATHWAY | Caspase cascade in apoptosis |
| 0.8 | 2.4 | PID AURORA A PATHWAY | Aurora A signaling |
| 0.3 | 2.1 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
| 0.5 | 1.5 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.7 | 1.4 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
| 0.3 | 1.3 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
| 0.1 | 1.0 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
| 0.2 | 0.8 | PID SMAD2 3NUCLEAR PATHWAY | Regulation of nuclear SMAD2/3 signaling |
| 0.2 | 0.8 | PID MYC PATHWAY | C-MYC pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 2.0 | 12.2 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.3 | 3.1 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.8 | 2.5 | REACTOME NUCLEOTIDE BINDING DOMAIN LEUCINE RICH REPEAT CONTAINING RECEPTOR NLR SIGNALING PATHWAYS | Genes involved in Nucleotide-binding domain, leucine rich repeat containing receptor (NLR) signaling pathways |
| 0.5 | 1.4 | REACTOME PREFOLDIN MEDIATED TRANSFER OF SUBSTRATE TO CCT TRIC | Genes involved in Prefoldin mediated transfer of substrate to CCT/TriC |
| 0.5 | 1.4 | REACTOME OXYGEN DEPENDENT PROLINE HYDROXYLATION OF HYPOXIA INDUCIBLE FACTOR ALPHA | Genes involved in Oxygen-dependent Proline Hydroxylation of Hypoxia-inducible Factor Alpha |
| 0.3 | 1.4 | REACTOME MHC CLASS II ANTIGEN PRESENTATION | Genes involved in MHC class II antigen presentation |
| 0.2 | 1.3 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
| 0.4 | 1.2 | REACTOME APOPTOTIC EXECUTION PHASE | Genes involved in Apoptotic execution phase |
| 0.4 | 1.1 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
| 0.4 | 1.1 | REACTOME SEMAPHORIN INTERACTIONS | Genes involved in Semaphorin interactions |