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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT5G65310
Z-value: 1.88
Transcription factors associated with AT5G65310
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G65310
|
AT5G65310 | homeobox protein 5 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| HB5 | arTal_v1_Chr5_-_26104174_26104174 | -0.45 | 1.1e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_+_6826587_6826587 Show fit | 3.54 |
AT4G11190.1
|
Disease resistance-responsive (dirigent-like protein) family protein |
|
| arTal_v1_Chr4_-_14827211_14827211 Show fit | 3.42 |
AT4G30280.1
|
xyloglucan endotransglucosylase/hydrolase 18 |
|
| arTal_v1_Chr5_+_19434758_19434758 Show fit | 3.22 |
AT5G47990.1
|
cytochrome P450, family 705, subfamily A, polypeptide 5 |
|
| arTal_v1_Chr4_-_7417873_7417873 Show fit | 3.02 |
AT4G12510.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr5_-_19036938_19036938 Show fit | 2.93 |
AT5G46890.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr4_-_7421828_7421828 Show fit | 2.89 |
AT4G12520.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr4_+_6832650_6832650 Show fit | 2.88 |
AT4G11210.1
|
Disease resistance-responsive (dirigent-like protein) family protein |
|
| arTal_v1_Chr5_+_1119937_1119937 Show fit | 2.80 |
AT5G04120.1
|
Phosphoglycerate mutase family protein |
|
| arTal_v1_Chr5_+_9200271_9200271 Show fit | 2.77 |
AT5G26260.1
|
TRAF-like family protein |
|
| arTal_v1_Chr5_+_19428888_19428888 Show fit | 2.76 |
AT5G47980.1
|
HXXXD-type acyl-transferase family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G65310
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 26.0 | GO:0010200 | response to chitin(GO:0010200) |
| 0.2 | 15.7 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 0.1 | 13.0 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.1 | 7.8 | GO:0007267 | cell-cell signaling(GO:0007267) |
| 0.4 | 6.9 | GO:0042343 | indole glucosinolate metabolic process(GO:0042343) |
| 0.3 | 6.8 | GO:0030091 | protein repair(GO:0030091) |
| 0.2 | 6.3 | GO:0009828 | plant-type cell wall loosening(GO:0009828) |
| 1.5 | 6.2 | GO:0080003 | thalianol metabolic process(GO:0080003) |
| 0.4 | 6.2 | GO:0015918 | sterol transport(GO:0015918) |
| 0.6 | 5.8 | GO:0009652 | thigmotropism(GO:0009652) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 176.4 | GO:0005576 | extracellular region(GO:0005576) |
| 0.2 | 66.8 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.1 | 7.5 | GO:0009705 | plant-type vacuole membrane(GO:0009705) |
| 0.2 | 6.0 | GO:0012511 | monolayer-surrounded lipid storage body(GO:0012511) |
| 0.1 | 4.5 | GO:0005811 | lipid particle(GO:0005811) |
| 0.4 | 4.2 | GO:0048226 | Casparian strip(GO:0048226) |
| 0.1 | 3.5 | GO:0030173 | integral component of Golgi membrane(GO:0030173) intrinsic component of Golgi membrane(GO:0031228) |
| 0.1 | 3.4 | GO:0090406 | pollen tube(GO:0090406) |
| 0.3 | 2.9 | GO:0000326 | storage vacuole(GO:0000322) protein storage vacuole(GO:0000326) |
| 0.5 | 2.6 | GO:0035061 | interchromatin granule(GO:0035061) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 11.8 | GO:0008171 | O-methyltransferase activity(GO:0008171) |
| 0.2 | 11.8 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 0.6 | 10.9 | GO:0015250 | water transmembrane transporter activity(GO:0005372) water channel activity(GO:0015250) |
| 1.3 | 10.7 | GO:0033946 | xyloglucan-specific endo-beta-1,4-glucanase activity(GO:0033946) |
| 0.1 | 8.2 | GO:0016709 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen(GO:0016709) |
| 0.1 | 8.1 | GO:0009055 | electron carrier activity(GO:0009055) |
| 0.2 | 7.5 | GO:0005179 | hormone activity(GO:0005179) |
| 0.3 | 7.4 | GO:0052716 | hydroquinone:oxygen oxidoreductase activity(GO:0052716) |
| 0.6 | 6.8 | GO:0033743 | peptide-methionine (R)-S-oxide reductase activity(GO:0033743) |
| 0.2 | 6.6 | GO:0032934 | sterol binding(GO:0032934) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.8 | 4.6 | PID CASPASE PATHWAY | Caspase cascade in apoptosis |
| 0.3 | 2.1 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
| 0.6 | 1.8 | PID AURORA A PATHWAY | Aurora A signaling |
| 0.5 | 1.6 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.2 | 1.0 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
| 0.3 | 0.9 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
| 0.2 | 0.7 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
| 0.2 | 0.5 | PID MYC REPRESS PATHWAY | Validated targets of C-MYC transcriptional repression |
| 0.1 | 0.4 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.1 | 0.3 | PID PI3KCI PATHWAY | Class I PI3K signaling events |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 2.8 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.9 | 2.6 | REACTOME NUCLEOTIDE BINDING DOMAIN LEUCINE RICH REPEAT CONTAINING RECEPTOR NLR SIGNALING PATHWAYS | Genes involved in Nucleotide-binding domain, leucine rich repeat containing receptor (NLR) signaling pathways |
| 0.3 | 1.5 | REACTOME MHC CLASS II ANTIGEN PRESENTATION | Genes involved in MHC class II antigen presentation |
| 0.3 | 1.2 | REACTOME INTRINSIC PATHWAY FOR APOPTOSIS | Genes involved in Intrinsic Pathway for Apoptosis |
| 0.2 | 1.2 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |
| 0.3 | 1.0 | REACTOME REGULATION OF HYPOXIA INDUCIBLE FACTOR HIF BY OXYGEN | Genes involved in Regulation of Hypoxia-inducible Factor (HIF) by Oxygen |
| 0.2 | 1.0 | REACTOME BMAL1 CLOCK NPAS2 ACTIVATES CIRCADIAN EXPRESSION | Genes involved in BMAL1:CLOCK/NPAS2 Activates Circadian Expression |
| 0.2 | 0.7 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
| 0.2 | 0.7 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.1 | 0.7 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |