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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT5G65130
Z-value: 1.75
Transcription factors associated with AT5G65130
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G65130
|
AT5G65130 | Integrase-type DNA-binding superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT5G65130 | arTal_v1_Chr5_+_26017403_26017403 | 0.21 | 4.6e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_+_6833564_6833659 Show fit | 4.70 |
AT5G20250.2
AT5G20250.1 AT5G20250.4 AT5G20250.3 |
Raffinose synthase family protein |
|
| arTal_v1_Chr5_+_20891163_20891163 Show fit | 3.02 |
AT5G51440.1
|
HSP20-like chaperones superfamily protein |
|
| arTal_v1_Chr1_-_7388512_7388512 Show fit | 2.83 |
AT1G21100.1
|
O-methyltransferase family protein |
|
| arTal_v1_Chr4_+_9759203_9759203 Show fit | 2.69 |
AT4G17500.1
|
ethylene responsive element binding factor 1 |
|
| arTal_v1_Chr3_+_5505360_5505360 Show fit | 2.56 |
AT3G16240.1
|
delta tonoplast integral protein |
|
| arTal_v1_Chr4_-_9754161_9754161 Show fit | 2.50 |
AT4G17490.1
|
ethylene responsive element binding factor 6 |
|
| arTal_v1_Chr1_-_2190784_2190784 Show fit | 2.42 |
AT1G07135.1
|
glycine-rich protein |
|
| arTal_v1_Chr5_-_25661007_25661007 Show fit | 2.30 |
AT5G64120.1
|
Peroxidase superfamily protein |
|
| arTal_v1_Chr5_-_8186662_8186704 Show fit | 2.30 |
AT5G24160.2
AT5G24160.1 |
squalene monooxygenase 6 |
|
| arTal_v1_Chr5_+_9683988_9683988 Show fit | 2.26 |
AT5G27420.1
|
carbon/nitrogen insensitive 1 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G65130
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 13.6 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.1 | 13.0 | GO:0010200 | response to chitin(GO:0010200) |
| 0.2 | 7.0 | GO:0043562 | cellular response to nitrogen levels(GO:0043562) |
| 0.1 | 4.7 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.1 | 4.1 | GO:0016126 | sterol biosynthetic process(GO:0016126) |
| 1.3 | 3.9 | GO:0015840 | urea transport(GO:0015840) |
| 0.1 | 3.3 | GO:0042343 | indole glucosinolate metabolic process(GO:0042343) |
| 0.0 | 3.3 | GO:0009873 | ethylene-activated signaling pathway(GO:0009873) |
| 0.2 | 2.9 | GO:0051865 | protein autoubiquitination(GO:0051865) |
| 0.1 | 2.8 | GO:0002213 | defense response to insect(GO:0002213) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 10.7 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.6 | 4.5 | GO:0031588 | nucleotide-activated protein kinase complex(GO:0031588) |
| 0.3 | 2.9 | GO:0000326 | storage vacuole(GO:0000322) protein storage vacuole(GO:0000326) |
| 0.7 | 2.0 | GO:0043673 | pollen wall(GO:0043667) exine(GO:0043668) sexine(GO:0043673) columella(GO:0043674) |
| 0.0 | 1.9 | GO:0090406 | pollen tube(GO:0090406) |
| 0.0 | 1.8 | GO:0016607 | nuclear speck(GO:0016607) |
| 0.2 | 1.5 | GO:0038201 | TORC1 complex(GO:0031931) TOR complex(GO:0038201) |
| 0.2 | 1.5 | GO:0009538 | photosystem I reaction center(GO:0009538) |
| 0.4 | 1.2 | GO:0009514 | glyoxysome(GO:0009514) |
| 0.0 | 1.2 | GO:0005615 | extracellular space(GO:0005615) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 9.0 | GO:0000976 | regulatory region DNA binding(GO:0000975) transcription regulatory region sequence-specific DNA binding(GO:0000976) regulatory region nucleic acid binding(GO:0001067) transcription regulatory region DNA binding(GO:0044212) |
| 0.7 | 4.7 | GO:0047274 | galactinol-sucrose galactosyltransferase activity(GO:0047274) |
| 0.0 | 4.6 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
| 0.5 | 4.3 | GO:0004506 | squalene monooxygenase activity(GO:0004506) |
| 1.0 | 4.2 | GO:1901982 | disaccharide binding(GO:0048030) maltose binding(GO:1901982) |
| 1.3 | 3.9 | GO:0015204 | urea transmembrane transporter activity(GO:0015204) |
| 0.0 | 3.3 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 0.1 | 3.2 | GO:0015174 | basic amino acid transmembrane transporter activity(GO:0015174) |
| 0.1 | 2.9 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 0.0 | 2.9 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 2.4 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.1 | 1.1 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |
| 0.1 | 0.8 | REACTOME FATTY ACID TRIACYLGLYCEROL AND KETONE BODY METABOLISM | Genes involved in Fatty acid, triacylglycerol, and ketone body metabolism |