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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT5G64750
Z-value: 0.88
Transcription factors associated with AT5G64750
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G64750
|
AT5G64750 | Integrase-type DNA-binding superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| ABR1 | arTal_v1_Chr5_+_25891449_25891449 | -0.41 | 1.4e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_+_12686459_12686459 Show fit | 1.64 |
AT4G24570.1
|
dicarboxylate carrier 2 |
|
| arTal_v1_Chr4_-_5648727_5648868 Show fit | 1.50 |
AT4G08870.2
AT4G08870.1 |
Arginase/deacetylase superfamily protein |
|
| arTal_v1_Chr5_+_23187840_23187840 Show fit | 1.49 |
AT5G57220.1
|
cytochrome P450, family 81, subfamily F, polypeptide 2 |
|
| arTal_v1_Chr4_-_9754161_9754161 Show fit | 1.48 |
AT4G17490.1
|
ethylene responsive element binding factor 6 |
|
| arTal_v1_Chr3_+_10538005_10538105 Show fit | 1.45 |
AT3G28270.2
AT3G28270.1 |
transmembrane protein, putative (DUF677) |
|
| arTal_v1_Chr2_-_8533779_8533779 Show fit | 1.44 |
AT2G19800.1
|
myo-inositol oxygenase 2 |
|
| arTal_v1_Chr4_+_9759203_9759203 Show fit | 1.42 |
AT4G17500.1
|
ethylene responsive element binding factor 1 |
|
| arTal_v1_Chr3_+_22142856_22142856 Show fit | 1.39 |
AT3G59940.1
|
Galactose oxidase/kelch repeat superfamily protein |
|
| arTal_v1_Chr1_+_11928757_11928757 Show fit | 1.34 |
AT1G32920.1
|
hypothetical protein |
|
| arTal_v1_Chr4_+_11150049_11150049 Show fit | 1.33 |
AT4G20820.1
|
FAD-binding Berberine family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G64750
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 11.7 | GO:0010200 | response to chitin(GO:0010200) |
| 0.0 | 5.9 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.1 | 2.6 | GO:0010600 | regulation of auxin biosynthetic process(GO:0010600) |
| 0.1 | 2.6 | GO:2000022 | regulation of jasmonic acid mediated signaling pathway(GO:2000022) |
| 0.6 | 1.9 | GO:0071422 | thiosulfate transport(GO:0015709) succinate transmembrane transport(GO:0071422) |
| 0.3 | 1.9 | GO:0009759 | indole glucosinolate biosynthetic process(GO:0009759) |
| 0.0 | 1.6 | GO:0048235 | pollen sperm cell differentiation(GO:0048235) |
| 0.5 | 1.5 | GO:0000050 | urea cycle(GO:0000050) |
| 0.1 | 1.5 | GO:0080163 | regulation of protein serine/threonine phosphatase activity(GO:0080163) |
| 0.3 | 1.4 | GO:0019310 | inositol catabolic process(GO:0019310) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 6.2 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.2 | 1.8 | GO:0009538 | photosystem I reaction center(GO:0009538) |
| 0.1 | 1.8 | GO:0009654 | photosystem II oxygen evolving complex(GO:0009654) |
| 0.0 | 1.6 | GO:0016607 | nuclear speck(GO:0016607) |
| 0.1 | 1.4 | GO:0005750 | mitochondrial respiratory chain complex III(GO:0005750) respiratory chain complex III(GO:0045275) |
| 0.2 | 1.3 | GO:0031588 | nucleotide-activated protein kinase complex(GO:0031588) |
| 0.1 | 1.0 | GO:0005801 | cis-Golgi network(GO:0005801) |
| 0.1 | 0.7 | GO:0005960 | glycine cleavage complex(GO:0005960) |
| 0.1 | 0.7 | GO:0038201 | TORC1 complex(GO:0031931) TOR complex(GO:0038201) |
| 0.1 | 0.7 | GO:0000322 | storage vacuole(GO:0000322) protein storage vacuole(GO:0000326) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 2.3 | GO:0009055 | electron carrier activity(GO:0009055) |
| 0.6 | 1.9 | GO:0015117 | thiosulfate transmembrane transporter activity(GO:0015117) |
| 0.1 | 1.7 | GO:0016645 | oxidoreductase activity, acting on the CH-NH group of donors(GO:0016645) |
| 0.1 | 1.5 | GO:0016813 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines(GO:0016813) |
| 0.1 | 1.5 | GO:0004708 | MAP kinase kinase activity(GO:0004708) |
| 0.1 | 1.5 | GO:0004864 | protein phosphatase inhibitor activity(GO:0004864) |
| 0.1 | 1.5 | GO:0015174 | basic amino acid transmembrane transporter activity(GO:0015174) |
| 0.3 | 1.4 | GO:0050113 | inositol oxygenase activity(GO:0050113) |
| 0.0 | 1.4 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 0.3 | 1.3 | GO:0048030 | disaccharide binding(GO:0048030) maltose binding(GO:1901982) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.3 | SA CASPASE CASCADE | Apoptosis is mediated by caspases, cysteine proteases arranged in a proteolytic cascade. |
| 0.0 | 0.3 | PID E2F PATHWAY | E2F transcription factor network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.8 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
| 0.1 | 0.5 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
| 0.1 | 0.5 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |
| 0.0 | 0.4 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.0 | 0.4 | REACTOME FATTY ACID TRIACYLGLYCEROL AND KETONE BODY METABOLISM | Genes involved in Fatty acid, triacylglycerol, and ketone body metabolism |