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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT5G64060
Z-value: 3.13
Transcription factors associated with AT5G64060
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G64060
|
AT5G64060 | NAC domain containing protein 103 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| NAC103 | arTal_v1_Chr5_-_25635789_25635789 | -0.04 | 8.9e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_+_16441808_16441808 Show fit | 6.50 |
AT5G41080.2
|
PLC-like phosphodiesterases superfamily protein |
|
| arTal_v1_Chr5_+_16441655_16441655 Show fit | 6.43 |
AT5G41080.1
|
PLC-like phosphodiesterases superfamily protein |
|
| arTal_v1_Chr5_+_6833564_6833659 Show fit | 6.15 |
AT5G20250.2
AT5G20250.1 AT5G20250.4 AT5G20250.3 |
Raffinose synthase family protein |
|
| arTal_v1_Chr4_-_14827211_14827211 Show fit | 4.66 |
AT4G30280.1
|
xyloglucan endotransglucosylase/hydrolase 18 |
|
| arTal_v1_Chr4_+_13128394_13128394 Show fit | 4.63 |
AT4G25810.1
|
xyloglucan endotransglycosylase 6 |
|
| arTal_v1_Chr1_-_7388512_7388512 Show fit | 4.29 |
AT1G21100.1
|
O-methyltransferase family protein |
|
| arTal_v1_Chr1_-_24558322_24558322 Show fit | 4.25 |
AT1G65970.1
|
thioredoxin-dependent peroxidase 2 |
|
| arTal_v1_Chr2_-_8533779_8533779 Show fit | 4.01 |
AT2G19800.1
|
myo-inositol oxygenase 2 |
|
| arTal_v1_Chr3_-_3420932_3420932 Show fit | 3.91 |
AT3G10930.1
|
hypothetical protein |
|
| arTal_v1_Chr3_+_8703220_8703220 Show fit | 3.85 |
AT3G24100.1
|
Uncharacterized protein family SERF |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G64060
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 17.5 | GO:0010200 | response to chitin(GO:0010200) |
| 0.3 | 17.4 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 3.2 | 12.9 | GO:0046475 | glycerophospholipid catabolic process(GO:0046475) |
| 0.1 | 11.6 | GO:0009860 | pollen tube growth(GO:0009860) |
| 0.5 | 6.2 | GO:0080086 | stamen filament development(GO:0080086) |
| 0.3 | 6.0 | GO:0042343 | indole glucosinolate metabolic process(GO:0042343) |
| 0.2 | 5.7 | GO:2000022 | regulation of jasmonic acid mediated signaling pathway(GO:2000022) |
| 0.0 | 5.0 | GO:0045944 | positive regulation of transcription from RNA polymerase II promoter(GO:0045944) |
| 0.9 | 4.6 | GO:0019310 | inositol catabolic process(GO:0019310) |
| 0.1 | 4.6 | GO:0048235 | pollen sperm cell differentiation(GO:0048235) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 66.5 | GO:0005576 | extracellular region(GO:0005576) |
| 0.1 | 15.7 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.1 | 8.4 | GO:0010287 | plastoglobule(GO:0010287) |
| 0.3 | 6.2 | GO:0016324 | apical plasma membrane(GO:0016324) |
| 0.4 | 5.1 | GO:0005880 | nuclear microtubule(GO:0005880) |
| 0.0 | 3.7 | GO:0005777 | peroxisome(GO:0005777) microbody(GO:0042579) |
| 0.1 | 3.5 | GO:0090575 | RNA polymerase II transcription factor complex(GO:0090575) |
| 0.3 | 3.2 | GO:0048226 | Casparian strip(GO:0048226) |
| 0.9 | 2.6 | GO:0009514 | glyoxysome(GO:0009514) |
| 0.3 | 2.3 | GO:0005784 | Sec61 translocon complex(GO:0005784) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.0 | 13.5 | GO:0008889 | glycerophosphodiester phosphodiesterase activity(GO:0008889) |
| 0.3 | 8.5 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 1.0 | 8.2 | GO:0033946 | xyloglucan-specific endo-beta-1,4-glucanase activity(GO:0033946) |
| 0.2 | 6.5 | GO:0016682 | oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor(GO:0016682) |
| 0.5 | 6.4 | GO:0016847 | 1-aminocyclopropane-1-carboxylate synthase activity(GO:0016847) |
| 0.1 | 6.3 | GO:0008171 | O-methyltransferase activity(GO:0008171) |
| 1.7 | 5.2 | GO:0000249 | C-22 sterol desaturase activity(GO:0000249) |
| 0.2 | 5.0 | GO:0032934 | sterol binding(GO:0032934) |
| 0.1 | 4.9 | GO:0030599 | pectinesterase activity(GO:0030599) |
| 0.0 | 4.8 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.4 | 4.2 | PID AURORA A PATHWAY | Aurora A signaling |
| 0.2 | 1.7 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
| 0.4 | 1.2 | PID HIV NEF PATHWAY | HIV-1 Nef: Negative effector of Fas and TNF-alpha |
| 0.3 | 0.9 | PID MYC REPRESS PATHWAY | Validated targets of C-MYC transcriptional repression |
| 0.0 | 0.3 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.0 | 0.2 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
| 0.0 | 0.1 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.0 | 0.0 | PID ERA GENOMIC PATHWAY | Validated nuclear estrogen receptor alpha network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 2.2 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.2 | 1.7 | REACTOME RNA POL II TRANSCRIPTION PRE INITIATION AND PROMOTER OPENING | Genes involved in RNA Polymerase II Transcription Pre-Initiation And Promoter Opening |
| 0.3 | 1.6 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.3 | 1.4 | REACTOME RECYCLING OF BILE ACIDS AND SALTS | Genes involved in Recycling of bile acids and salts |
| 0.4 | 1.2 | REACTOME NUCLEOTIDE BINDING DOMAIN LEUCINE RICH REPEAT CONTAINING RECEPTOR NLR SIGNALING PATHWAYS | Genes involved in Nucleotide-binding domain, leucine rich repeat containing receptor (NLR) signaling pathways |
| 0.3 | 0.9 | REACTOME TRANSCRIPTIONAL ACTIVITY OF SMAD2 SMAD3 SMAD4 HETEROTRIMER | Genes involved in Transcriptional activity of SMAD2/SMAD3:SMAD4 heterotrimer |
| 0.1 | 0.3 | REACTOME G ALPHA I SIGNALLING EVENTS | Genes involved in G alpha (i) signalling events |
| 0.1 | 0.1 | REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS | Genes involved in Sphingolipid de novo biosynthesis |