GSE130291:vernalization in Arabidopsis thaliana
Gene Symbol | Gene ID | Gene Info |
---|---|---|
AT5G63260
|
AT5G63260 | Zinc finger C-x8-C-x5-C-x3-H type family protein |
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
AT5G63260 | arTal_v1_Chr5_+_25361713_25361747 | -0.64 | 1.3e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
arTal_v1_Chr1_+_1244947_1244947 Show fit | 0.88 |
AT1G04560.1
|
AWPM-19-like family protein |
|
arTal_v1_Chr1_+_12851983_12851983 Show fit | 0.86 |
AT1G35140.1
|
Phosphate-responsive 1 family protein |
|
arTal_v1_Chr1_-_8075037_8075037 Show fit | 0.84 |
AT1G22810.1
|
Integrase-type DNA-binding superfamily protein |
|
arTal_v1_Chr1_-_4975705_4975705 Show fit | 0.80 |
AT1G14540.1
|
Peroxidase superfamily protein |
|
arTal_v1_Chr3_-_12451556_12451556 Show fit | 0.79 |
AT3G30775.2
AT3G30775.1 |
Methylenetetrahydrofolate reductase family protein |
|
arTal_v1_Chr3_+_5505360_5505360 Show fit | 0.79 |
AT3G16240.1
|
delta tonoplast integral protein |
|
arTal_v1_Chr1_-_7396773_7396823 Show fit | 0.74 |
AT1G21120.1
AT1G21120.2 |
O-methyltransferase family protein |
|
arTal_v1_Chr1_+_3288087_3288087 Show fit | 0.73 |
AT1G10070.3
AT1G10070.2 AT1G10070.1 |
branched-chain amino acid transaminase 2 |
|
arTal_v1_Chr1_-_20458631_20458631 Show fit | 0.73 |
AT1G54860.1
|
Glycoprotein membrane precursor GPI-anchored |
|
arTal_v1_Chr3_-_790693_790693 Show fit | 0.71 |
AT3G03341.1
|
cold-regulated protein |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 7.2 | GO:0010200 | response to chitin(GO:0010200) |
0.1 | 2.3 | GO:0031408 | oxylipin biosynthetic process(GO:0031408) |
0.1 | 1.7 | GO:0006829 | zinc II ion transport(GO:0006829) |
0.0 | 1.6 | GO:0016126 | sterol biosynthetic process(GO:0016126) |
0.1 | 1.5 | GO:0010262 | somatic embryogenesis(GO:0010262) |
0.1 | 1.5 | GO:0010584 | pollen exine formation(GO:0010584) |
0.0 | 1.5 | GO:0009696 | salicylic acid metabolic process(GO:0009696) |
0.5 | 1.4 | GO:0015840 | urea transport(GO:0015840) |
0.1 | 1.4 | GO:0042343 | indole glucosinolate metabolic process(GO:0042343) |
0.1 | 1.4 | GO:0030091 | protein repair(GO:0030091) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 9.9 | GO:0031225 | anchored component of membrane(GO:0031225) |
0.0 | 2.4 | GO:0005811 | lipid particle(GO:0005811) |
0.1 | 1.5 | GO:0000326 | storage vacuole(GO:0000322) protein storage vacuole(GO:0000326) |
0.1 | 1.5 | GO:0016324 | apical plasma membrane(GO:0016324) |
0.0 | 1.5 | GO:0009705 | plant-type vacuole membrane(GO:0009705) |
0.0 | 1.4 | GO:0005615 | extracellular space(GO:0005615) |
0.2 | 1.2 | GO:0035061 | interchromatin granule(GO:0035061) |
0.1 | 1.2 | GO:0031588 | nucleotide-activated protein kinase complex(GO:0031588) |
0.0 | 0.9 | GO:0016602 | CCAAT-binding factor complex(GO:0016602) |
0.2 | 0.7 | GO:0016461 | unconventional myosin complex(GO:0016461) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.8 | GO:0008134 | transcription factor binding(GO:0008134) |
0.2 | 2.3 | GO:0033743 | peptide-methionine (R)-S-oxide reductase activity(GO:0033743) |
0.1 | 2.1 | GO:0015250 | water transmembrane transporter activity(GO:0005372) water channel activity(GO:0015250) |
0.1 | 1.7 | GO:0005179 | hormone activity(GO:0005179) |
0.1 | 1.6 | GO:0031559 | lanosterol synthase activity(GO:0000250) oxidosqualene cyclase activity(GO:0031559) |
0.0 | 1.6 | GO:0004523 | RNA-DNA hybrid ribonuclease activity(GO:0004523) |
0.1 | 1.5 | GO:0015145 | monosaccharide transmembrane transporter activity(GO:0015145) |
0.5 | 1.4 | GO:0015204 | urea transmembrane transporter activity(GO:0015204) |
0.1 | 1.4 | GO:0010427 | abscisic acid binding(GO:0010427) |
0.2 | 1.3 | GO:0004506 | squalene monooxygenase activity(GO:0004506) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 0.5 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
0.1 | 0.5 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
0.1 | 0.3 | PID IL12 2PATHWAY | IL12-mediated signaling events |
0.1 | 0.3 | PID HIV NEF PATHWAY | HIV-1 Nef: Negative effector of Fas and TNF-alpha |
0.0 | 0.2 | PID HDAC CLASSII PATHWAY | Signaling events mediated by HDAC Class II |
0.0 | 0.2 | PID RAC1 PATHWAY | RAC1 signaling pathway |
0.1 | 0.1 | PID IL8 CXCR2 PATHWAY | IL8- and CXCR2-mediated signaling events |
0.0 | 0.1 | PID P73PATHWAY | p73 transcription factor network |
0.0 | 0.1 | PID MET PATHWAY | Signaling events mediated by Hepatocyte Growth Factor Receptor (c-Met) |
0.0 | 0.1 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 0.5 | REACTOME REGULATION OF HYPOXIA INDUCIBLE FACTOR HIF BY OXYGEN | Genes involved in Regulation of Hypoxia-inducible Factor (HIF) by Oxygen |
0.1 | 0.5 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |
0.1 | 0.4 | REACTOME G1 S SPECIFIC TRANSCRIPTION | Genes involved in G1/S-Specific Transcription |
0.1 | 0.4 | REACTOME INTRINSIC PATHWAY FOR APOPTOSIS | Genes involved in Intrinsic Pathway for Apoptosis |
0.1 | 0.3 | REACTOME MHC CLASS II ANTIGEN PRESENTATION | Genes involved in MHC class II antigen presentation |
0.0 | 0.3 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
0.0 | 0.3 | REACTOME MEIOTIC RECOMBINATION | Genes involved in Meiotic Recombination |
0.0 | 0.3 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
0.0 | 0.2 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
0.0 | 0.1 | REACTOME FORMATION OF TUBULIN FOLDING INTERMEDIATES BY CCT TRIC | Genes involved in Formation of tubulin folding intermediates by CCT/TriC |