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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT5G63090
Z-value: 0.64
Transcription factors associated with AT5G63090
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G63090
|
AT5G63090 | Lateral organ boundaries (LOB) domain family protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| LOB | arTal_v1_Chr5_-_25310973_25311019 | -0.06 | 8.5e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_+_18542061_18542061 Show fit | 0.47 |
AT1G50040.1
|
formin-like protein, putative (DUF1005) |
|
| arTal_v1_Chr4_+_17388649_17388649 Show fit | 0.45 |
AT4G36900.1
|
related to AP2 10 |
|
| arTal_v1_Chr2_+_13722362_13722427 Show fit | 0.44 |
AT2G32300.2
AT2G32300.1 |
uclacyanin 1 |
|
| arTal_v1_Chr2_+_16011233_16011233 Show fit | 0.44 |
AT2G38230.1
|
pyridoxine biosynthesis 1.1 |
|
| arTal_v1_Chr3_+_22129505_22129505 Show fit | 0.41 |
AT3G59900.1
|
auxin-regulated gene involved in organ size |
|
| arTal_v1_Chr2_-_591689_591689 Show fit | 0.40 |
AT2G02230.1
|
phloem protein 2-B1 |
|
| arTal_v1_Chr4_+_8646150_8646150 Show fit | 0.39 |
AT4G15160.2
AT4G15160.1 |
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr2_-_7496292_7496292 Show fit | 0.39 |
AT2G17230.1
|
EXORDIUM like 5 |
|
| arTal_v1_Chr3_-_1261634_1261683 Show fit | 0.39 |
AT3G04640.2
AT3G04640.1 AT3G04640.3 |
glycine-rich protein |
|
| arTal_v1_Chr5_+_4541780_4541780 Show fit | 0.37 |
AT5G14070.1
|
Thioredoxin superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G63090
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.7 | GO:0046622 | positive regulation of organ growth(GO:0046622) |
| 0.0 | 0.6 | GO:1900057 | positive regulation of leaf senescence(GO:1900057) |
| 0.0 | 0.5 | GO:0043562 | cellular response to nitrogen levels(GO:0043562) |
| 0.1 | 0.4 | GO:0015709 | thiosulfate transport(GO:0015709) succinate transmembrane transport(GO:0071422) |
| 0.1 | 0.4 | GO:0080170 | hydrogen peroxide transmembrane transport(GO:0080170) |
| 0.1 | 0.4 | GO:0008615 | pyridoxine biosynthetic process(GO:0008615) |
| 0.0 | 0.4 | GO:0048826 | cotyledon morphogenesis(GO:0048826) |
| 0.0 | 0.4 | GO:0003333 | amino acid transmembrane transport(GO:0003333) |
| 0.0 | 0.4 | GO:0045926 | negative regulation of growth(GO:0045926) |
| 0.0 | 0.4 | GO:0009828 | plant-type cell wall loosening(GO:0009828) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 3.8 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 2.3 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.1 | 0.5 | GO:0031588 | nucleotide-activated protein kinase complex(GO:0031588) |
| 0.1 | 0.4 | GO:0070505 | pollen coat(GO:0070505) |
| 0.0 | 0.3 | GO:0000322 | storage vacuole(GO:0000322) protein storage vacuole(GO:0000326) |
| 0.0 | 0.3 | GO:0005769 | early endosome(GO:0005769) |
| 0.1 | 0.2 | GO:0044420 | extracellular matrix component(GO:0044420) |
| 0.0 | 0.2 | GO:0031464 | Cul4A-RING E3 ubiquitin ligase complex(GO:0031464) |
| 0.0 | 0.2 | GO:0000275 | mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)(GO:0000275) |
| 0.0 | 0.2 | GO:1902562 | NuA4 histone acetyltransferase complex(GO:0035267) H4/H2A histone acetyltransferase complex(GO:0043189) H4 histone acetyltransferase complex(GO:1902562) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.7 | GO:0005199 | structural constituent of cell wall(GO:0005199) |
| 0.1 | 0.5 | GO:0048030 | disaccharide binding(GO:0048030) maltose binding(GO:1901982) |
| 0.0 | 0.5 | GO:0015174 | basic amino acid transmembrane transporter activity(GO:0015174) |
| 0.1 | 0.4 | GO:0036381 | pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity(GO:0036381) |
| 0.1 | 0.4 | GO:0015117 | thiosulfate transmembrane transporter activity(GO:0015117) |
| 0.0 | 0.4 | GO:0000156 | phosphorelay response regulator activity(GO:0000156) |
| 0.1 | 0.3 | GO:0016802 | adenosylhomocysteinase activity(GO:0004013) trialkylsulfonium hydrolase activity(GO:0016802) |
| 0.0 | 0.3 | GO:0016621 | cinnamoyl-CoA reductase activity(GO:0016621) |
| 0.0 | 0.3 | GO:0015140 | malate transmembrane transporter activity(GO:0015140) |
| 0.0 | 0.3 | GO:0009979 | 16:0 monogalactosyldiacylglycerol desaturase activity(GO:0009979) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.1 | PID HDAC CLASSII PATHWAY | Signaling events mediated by HDAC Class II |
| 0.0 | 0.1 | PID AMB2 NEUTROPHILS PATHWAY | amb2 Integrin signaling |
| 0.0 | 0.1 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
| 0.0 | 0.1 | PID BARD1 PATHWAY | BARD1 signaling events |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.6 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.0 | 0.2 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.0 | 0.1 | REACTOME PRE NOTCH EXPRESSION AND PROCESSING | Genes involved in Pre-NOTCH Expression and Processing |
| 0.0 | 0.1 | REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT | Genes involved in Lipid digestion, mobilization, and transport |