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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT5G63090

Z-value: 0.64

Transcription factors associated with AT5G63090

Gene Symbol Gene ID Gene Info
AT5G63090
AT5G63090 Lateral organ boundaries (LOB) domain family protein

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
LOBarTal_v1_Chr5_-_25310973_25311019-0.068.5e-01Click!

Activity profile of AT5G63090 motif

Sorted Z-values of AT5G63090 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr1_+_18542061 0.47 AT1G50040.1
AT1G50040
formin-like protein, putative (DUF1005)
Chr4_+_17388649 0.45 AT4G36900.1
RAP2.10
related to AP2 10
Chr2_+_13722362 0.44 AT2G32300.2
AT2G32300.1
UCC1
uclacyanin 1
Chr2_+_16011233 0.44 AT2G38230.1
PDX1.1
pyridoxine biosynthesis 1.1
Chr3_+_22129505 0.41 AT3G59900.1
ARGOS
auxin-regulated gene involved in organ size
Chr2_-_591689 0.40 AT2G02230.1
PP2-B1
phloem protein 2-B1
Chr4_+_8646150 0.39 AT4G15160.2
AT4G15160.1
AT4G15160
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr2_-_7496292 0.39 AT2G17230.1
EXL5
EXORDIUM like 5
Chr3_-_1261634 0.39 AT3G04640.2
AT3G04640.1
AT3G04640.3
AT3G04640
glycine-rich protein
Chr5_+_4541780 0.37 AT5G14070.1
ROXY2
Thioredoxin superfamily protein
Chr4_+_14307195 0.36 AT4G29030.1
AT4G29030
Putative membrane lipoprotein
Chr2_+_9844134 0.36 AT2G23130.1
AT2G23130.2
AGP17
arabinogalactan protein 17
Chr3_+_22514027 0.35 AT3G60930.2
AT3G60930

Chr3_+_22514415 0.34 AT3G60930.1
AT3G60930

Chr1_-_9890875 0.34 AT1G28290.2
AT1G28290.1
AGP31
arabinogalactan protein 31
Chr2_-_9266557 0.34 AT2G21660.1
GRP7
cold, circadian rhythm, and rna binding 2
Chr4_-_17979740 0.33 AT4G38400.1
AT4G38401.1
EXLA2
AT4G38401
expansin-like A2
hypothetical protein
Chr2_-_9266393 0.33 AT2G21660.2
GRP7
cold, circadian rhythm, and rna binding 2
Chr4_-_14889855 0.33 AT4G30460.1
AT4G30460
glycine-rich protein
Chr5_-_565883 0.33 AT5G02530.2
AT5G02530.1
AT5G02530
RNA-binding (RRM/RBD/RNP motifs) family protein
Chr3_-_17180559 0.32 AT3G46620.1
RDUF1
zinc finger (C3HC4-type RING finger) family protein
Chr3_+_5121303 0.32 AT3G15210.1
ERF4
ethylene responsive element binding factor 4
Chr4_-_15111599 0.32 AT4G31030.1
AT4G31030
Putative membrane lipoprotein
Chr4_+_7758275 0.32 AT4G13340.1
LRX3
Leucine-rich repeat (LRR) family protein
Chr3_-_8902835 0.32 AT3G24480.1
AT3G24480
Leucine-rich repeat (LRR) family protein
Chr5_+_25703649 0.31 AT5G64260.1
EXL2
EXORDIUM like 2
Chr4_+_10254359 0.31 AT4G18620.1
PYL13
PYR1-like 13
Chr1_-_3272110 0.30 AT1G10020.1
AT1G10020
formin-like protein (DUF1005)
Chr1_+_116784 0.30 AT1G01300.1
AT1G01300
Eukaryotic aspartyl protease family protein
Chr4_+_9759203 0.30 AT4G17500.1
ERF-1
ethylene responsive element binding factor 1
Chr4_-_7493080 0.29 AT4G12730.1
FLA2
FASCICLIN-like arabinogalactan 2
Chr1_-_13456336 0.29 AT1G36060.1
AT1G36060
Integrase-type DNA-binding superfamily protein
Chr4_-_18098633 0.28 AT4G38770.1
PRP4
proline-rich protein 4
Chr1_+_954290 0.28 AT1G03790.1
SOM
Zinc finger C-x8-C-x5-C-x3-H type family protein
Chr3_+_1488329 0.28 AT3G05220.1
AT3G05220
Heavy metal transport/detoxification superfamily protein
Chr2_-_18744322 0.27 AT2G45470.1
FLA8
FASCICLIN-like arabinogalactan protein 8
Chr3_+_258879 0.27 AT3G01700.1
AGP11
arabinogalactan protein 11
Chr3_-_2130451 0.27 AT3G06750.1
AT3G06750
hydroxyproline-rich glycoprotein family protein
Chr4_-_18275017 0.27 AT4G39260.4
AT4G39260.3
AT4G39260.2
AT4G39260.1
CCR1
cold, circadian rhythm, and RNA binding 1
Chr5_-_19291103 0.26 AT5G47560.1
TDT
tonoplast dicarboxylate transporter
Chr4_+_12686459 0.26 AT4G24570.1
DIC2
dicarboxylate carrier 2
Chr2_+_9914246 0.26 AT2G23300.1
AT2G23300
Leucine-rich repeat protein kinase family protein
Chr1_+_3832563 0.26 AT1G11380.1
AT1G11380
PLAC8 family protein
Chr5_+_23384255 0.25 AT5G57710.1
AT5G57710
Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein
Chr4_-_13709013 0.25 AT4G27410.3
RD26
NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
Chr2_+_9937792 0.25 AT2G23340.1
DEAR3
DREB and EAR motif protein 3
Chr5_-_20940895 0.25 AT5G51550.1
EXL3
EXORDIUM like 3
Chr5_-_6976036 0.24 AT5G20630.1
GER3
germin 3
Chr5_-_16427797 0.24 AT5G41020.1
AT5G41020
myb family transcription factor
Chr2_+_15165213 0.24 AT2G36120.1
DOT1
Glycine-rich protein family
Chr4_-_13709170 0.24 AT4G27410.2
RD26
NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
Chr4_-_18073182 0.23 AT4G38680.1
GRP2
glycine rich protein 2
Chr2_+_1025 0.23 AT2G01008.1
AT2G01008
maternal effect embryo arrest protein
Chr3_-_16926883 0.23 AT3G46090.1
ZAT7
C2H2 and C2HC zinc fingers superfamily protein
Chr4_+_16091535 0.23 AT4G33440.1
AT4G33440
Pectin lyase-like superfamily protein
Chr4_+_17583992 0.23 AT4G37400.1
CYP81F3
cytochrome P450, family 81, subfamily F, polypeptide 3
Chr3_-_22256177 0.23 AT3G60220.1
ATL4
TOXICOS EN LEVADURA 4
Chr3_+_1489001 0.22 AT3G05220.2
AT3G05220
Heavy metal transport/detoxification superfamily protein
Chr3_+_21701520 0.22 AT3G58660.1
AT3G58660
Ribosomal protein L1p/L10e family
Chr4_-_13708861 0.22 AT4G27410.1
RD26
NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
Chr1_+_2649459 0.22 AT1G08420.1
AT1G08420.2
BSL2
BRI1 suppressor 1 (BSU1)-like 2
Chr1_-_3444360 0.22 AT1G10470.1
ARR4
response regulator 4
Chr2_+_14905788 0.22 AT2G35460.1
AT2G35460
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Chr1_+_22198266 0.22 AT1G60190.1
PUB19
ARM repeat superfamily protein
Chr2_-_9037782 0.21 AT2G21060.1
GRP2B
glycine-rich protein 2B
Chr2_+_18333370 0.21 AT2G44430.1
AT2G44430
DNA-binding bromodomain-containing protein
Chr1_-_3443957 0.21 AT1G10470.3
AT1G10470.2
ARR4
response regulator 4
Chr1_+_25574381 0.21 AT1G68238.1
AT1G68238
transmembrane protein
Chr2_+_8026957 0.21 AT2G18500.1
OFP7
ovate family protein 7
Chr1_+_26608600 0.21 AT1G70570.1
AT1G70570.2
AT1G70570
anthranilate phosphoribosyltransferase
Chr5_+_24323371 0.21 AT5G60480.1
HB26
homeobox protein 26
Chr1_+_23168767 0.21 AT1G62570.1
FMO GS-OX4
flavin-monooxygenase glucosinolate S-oxygenase 4
Chr2_+_15934244 0.20 AT2G38080.1
IRX12
Laccase/Diphenol oxidase family protein
Chr5_-_2958971 0.20 AT5G09520.1
PELPK2
hydroxyproline-rich glycoprotein family protein
Chr4_+_11672349 0.20 AT4G22030.1
AT4G22030
F-box protein with a domain protein
Chr4_+_578028 0.20 AT4G01410.1
AT4G01410
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Chr5_+_7205477 0.20 AT5G21170.1
AKINBETA1
5'-AMP-activated protein kinase beta-2 subunit protein
Chr3_+_5644593 0.20 AT3G16570.1
AT3G16570.2
AT3G16570.3
RALF23
rapid alkalinization factor 23
Chr2_-_19638678 0.20 AT2G47990.1
SWA1
transducin family protein / WD-40 repeat family protein
Chr3_-_9723904 0.20 AT3G26520.1
TIP2
tonoplast intrinsic protein 2
Chr2_-_15186852 0.20 AT2G36210.1
AT2G36210
SAUR-like auxin-responsive protein family
Chr4_-_15507176 0.20 AT4G32070.2
AT4G32070.1
Phox4
Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein
Chr5_+_16161449 0.19 AT5G40390.1
SIP1
Raffinose synthase family protein
Chr1_+_28163344 0.19 AT1G75000.1
AT1G75000
GNS1/SUR4 membrane protein family
Chr2_+_1993038 0.19 AT2G05440.2
AT2G05440.9
AT2G05440.5
AT2G05440.1
AT2G05440.6
AT2G05440.3
AT2G05440.4
AT2G05440.8
AT2G05440.7
GRP9
GLYCINE RICH PROTEIN 9
Chr1_+_7835781 0.19 AT1G22190.1
AT1G22190
Integrase-type DNA-binding superfamily protein
Chr3_-_4311629 0.19 AT3G13310.1
AT3G13310
Chaperone DnaJ-domain superfamily protein
Chr2_+_17728479 0.19 AT2G42580.1
TTL3
tetratricopetide-repeat thioredoxin-like 3
Chr5_+_24929207 0.19 AT5G62065.1
AT5G62065
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr2_-_17935748 0.19 AT2G43140.1
AT2G43140.2
AT2G43140
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr5_+_4271730 0.19 AT5G13330.1
Rap2.6L
related to AP2 6l
Chr5_+_2133918 0.19 AT5G06870.1
PGIP2
polygalacturonase inhibiting protein 2
Chr4_-_13754812 0.19 AT4G27540.1
AT4G27540.2
PRA1.H
prenylated RAB acceptor 1.H
Chr5_-_6072334 0.19 AT5G18340.1
AT5G18340
ARM repeat superfamily protein
Chr1_+_6100964 0.19 AT1G17745.1
AT1G17745.2
PGDH
D-3-phosphoglycerate dehydrogenase
Chr2_-_18401339 0.19 AT2G44578.1
AT2G44578
RING/U-box superfamily protein
Chr5_+_21410769 0.19 AT5G52830.1
WRKY27
WRKY DNA-binding protein 27
Chr5_+_7205667 0.18 AT5G21170.2
AKINBETA1
5'-AMP-activated protein kinase beta-2 subunit protein
Chr1_-_3241863 0.18 AT1G09950.1
RAS1
RESPONSE TO ABA AND SALT 1
Chr4_+_15490566 0.18 AT4G32030.1
AT4G32030
hypothetical protein
Chr4_+_15490740 0.18 AT4G32030.2
AT4G32030
hypothetical protein
Chr5_+_3744698 0.18 AT5G11650.1
AT5G11650
alpha/beta-Hydrolases superfamily protein
Chr5_-_23640973 0.18 AT5G58470.2
AT5G58470.1
TAF15b
TBP-associated factor 15B
Chr1_-_9649323 0.18 AT1G27730.1
STZ
salt tolerance zinc finger
Chr5_-_13940867 0.18 AT5G35770.1
SAP
Transducin/WD40 repeat-like superfamily protein
Chr2_-_17712290 0.18 AT2G42540.2
AT2G42540.4
AT2G42540.1
AT2G42540.3
COR15A
cold-regulated 15a
Chr3_+_3186266 0.18 AT3G10300.3
AT3G10300.2
AT3G10300.1
AT3G10300.5
AT3G10300.4
AT3G10300
Calcium-binding EF-hand family protein
Chr2_+_15127265 0.18 AT2G36026.1
AT2G36026
Ovate family protein
Chr5_+_6144855 0.18 AT5G18520.1
Cand7
Lung seven transmembrane receptor family protein
Chr3_-_574626 0.18 AT3G02670.1
AT3G02670.2
AT3G02670
Glycine-rich protein family
Chr1_+_26830603 0.18 AT1G71170.1
AT1G71170
6-phosphogluconate dehydrogenase family protein
Chr5_-_26607012 0.18 AT5G66650.1
AT5G66650
calcium uniporter (DUF607)
Chr5_-_26497848 0.17 AT5G66320.2
GATA5
GATA transcription factor 5
Chr3_-_387051 0.17 AT3G02140.1
TMAC2
AFP2 (ABI five-binding protein 2) family protein
Chr4_-_14872267 0.17 AT4G30410.1
AT4G30410.2
AT4G30410
sequence-specific DNA binding transcription factor
Chr5_-_26519242 0.17 AT5G66400.2
RAB18
Dehydrin family protein
Chr5_+_17154718 0.17 AT5G42780.1
HB27
homeobox protein 27
Chr3_-_17968590 0.17 AT3G48510.1
AT3G48510
AtIII18x5-like protein
Chr5_-_20919964 0.17 AT5G51500.1
AT5G51500
Plant invertase/pectin methylesterase inhibitor superfamily
Chr5_+_3744980 0.17 AT5G11650.2
AT5G11650
alpha/beta-Hydrolases superfamily protein
Chr2_+_9695832 0.17 AT2G22790.1
AT2G22790
hypothetical protein
Chr2_+_10344338 0.17 AT2G24310.1
AT2G24310
TPRXL
Chr3_-_17146867 0.17 AT3G46570.1
AT3G46570
Glycosyl hydrolase superfamily protein
Chr2_+_9592956 0.17 AT2G22590.1
AT2G22590
UDP-Glycosyltransferase superfamily protein
Chr5_-_26498014 0.17 AT5G66320.1
GATA5
GATA transcription factor 5
Chr3_-_4735993 0.17 AT3G14225.2
AT3G14225.1
GLIP4
GDSL-motif lipase 4
Chr5_+_23096024 0.16 AT5G57070.1
AT5G57070
hydroxyproline-rich glycoprotein family protein
Chr5_-_26104614 0.16 AT5G65310.1
HB5
homeobox protein 5
Chr5_+_4156501 0.16 AT5G13100.1
AT5G13100
Gap junction beta-4 protein
Chr2_+_15445294 0.16 AT2G36830.1
GAMMA-TIP
gamma tonoplast intrinsic protein
Chr2_-_17797413 0.16 AT2G42760.1
AT2G42760
DUF1685 family protein
Chr5_-_20468128 0.16 AT5G50300.1
AT5G50300.2
AZG2
Xanthine/uracil permease family protein
Chr3_-_1855063 0.16 AT3G06130.2
AT3G06130.1
AT3G06130
Heavy metal transport/detoxification superfamily protein
Chr1_-_958383 0.16 AT1G03800.1
ERF10
ERF domain protein 10
Chr2_-_16690182 0.15 AT2G39980.1
AT2G39980
HXXXD-type acyl-transferase family protein
Chr1_+_25788305 0.15 AT1G68690.2
AT1G68690.1
AT1G68690.3
PERK9
Protein kinase superfamily protein
Chr5_+_17588790 0.15 AT5G43770.1
AT5G43770
proline-rich family protein
Chr3_-_18196784 0.15 AT3G49080.1
AT3G49080
Ribosomal protein S5 domain 2-like superfamily protein
Chr3_+_1871558 0.15 AT3G06180.2
AT3G06180.1
AT3G06180
Ribosomal protein L34e superfamily protein
Chr3_+_3186038 0.15 AT3G10300.6
AT3G10300
Calcium-binding EF-hand family protein
Chr4_-_17235580 0.15 AT4G36520.1
AT4G36520
Chaperone DnaJ-domain superfamily protein
Chr5_-_7799628 0.15 AT5G23170.1
AT5G23170
Protein kinase superfamily protein
Chr1_-_12059792 0.15 AT1G33250.1
AT1G33250
beta-1,3-n-acetylglucosaminyltransferase radical fringe protein, putative (DUF604)
Chr2_-_13373862 0.15 AT2G31360.1
ADS2
16:0delta9 desaturase 2
Chr2_-_13374018 0.15 AT2G31360.2
ADS2
16:0delta9 desaturase 2
Chr5_+_24480291 0.15 AT5G60850.1
OBP4
OBF binding protein 4
Chr1_-_25622593 0.15 AT1G68360.1
AT1G68360
C2H2 and C2HC zinc fingers superfamily protein
Chr5_+_1378788 0.15 AT5G04770.2
CAT6
cationic amino acid transporter 6
Chr5_+_1378621 0.15 AT5G04770.1
CAT6
cationic amino acid transporter 6
Chr2_+_16083645 0.14 AT2G38400.1
AT2G38400.2
AGT3
alanine:glyoxylate aminotransferase 3
Chr2_-_10934604 0.14 AT2G25680.1
MOT1
molybdate transporter 1
Chr3_-_19666497 0.14 AT3G53040.1
AT3G53040
late embryogenesis abundant protein, putative / LEA protein
Chr5_+_8005097 0.14 AT5G23730.1
RUP2
Transducin/WD40 repeat-like superfamily protein
Chr1_-_10249704 0.14 AT1G29300.1
UNE1
intracellular protein transporter, putative (DUF641)
Chr5_+_1378954 0.14 AT5G04770.3
CAT6
cationic amino acid transporter 6
Chr3_+_10061009 0.14 AT3G27250.1
AT3G27250.2
AT3G27250
hypothetical protein
Chr3_-_23276630 0.14 AT3G62980.1
TIR1
F-box/RNI-like superfamily protein
Chr3_+_8685739 0.14 AT3G24050.1
GATA1
GATA transcription factor 1
Chr2_-_9564850 0.14 AT2G22500.1
UCP5
uncoupling protein 5
Chr5_-_25809595 0.14 AT5G64560.2
AT5G64560.1
MGT9
magnesium transporter 9
Chr3_+_7275645 0.14 AT3G20810.1
AT3G20810.4
AT3G20810.2
AT3G20810.5
AT3G20810.3
JMJD5
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr4_+_14418556 0.14 AT4G29240.1
AT4G29240.2
AT4G29240
Leucine-rich repeat (LRR) family protein
Chr4_+_15993957 0.14 AT4G33160.2
AT4G33160.1
AT4G33160
F-box family protein
Chr5_+_7207166 0.14 AT5G21170.3
AKINBETA1
5'-AMP-activated protein kinase beta-2 subunit protein
Chr5_-_26519447 0.14 AT5G66400.1
RAB18
Dehydrin family protein
Chr3_-_4744263 0.14 AT3G14240.1
AT3G14240
Subtilase family protein
Chr5_-_20016857 0.14 AT5G49360.1
BXL1
beta-xylosidase 1
Chr3_-_21798303 0.14 AT3G58990.1
IPMI1
isopropylmalate isomerase 1
Chr5_-_1580875 0.14 AT5G05340.1
PRX52
Peroxidase superfamily protein
Chr1_+_19310174 0.14 AT1G51960.1
IQD27
IQ-domain 27
Chr4_+_8054673 0.14 AT4G13940.1
HOG1
S-adenosyl-L-homocysteine hydrolase
Chr5_+_320349 0.14 AT5G01830.1
SAUR21
ARM repeat superfamily protein
Chr1_+_4084162 0.13 AT1G12080.1
AT1G12080.2
AT1G12080
Vacuolar calcium-binding protein-like protein
Chr4_+_8054861 0.13 AT4G13940.4
AT4G13940.3
AT4G13940.2
HOG1
S-adenosyl-L-homocysteine hydrolase
Chr4_-_6873689 0.13 AT4G11300.1
AT4G11300
ROH1, putative (DUF793)
Chr5_+_1949315 0.13 AT5G06380.1
AT5G06380
hypothetical protein
Chr5_-_23117403 0.13 AT5G57110.3
AT5G57110.1
AT5G57110.2
ACA8
autoinhibited Ca2+ -ATPase, isoform 8
Chr4_-_15954803 0.13 AT4G33070.1
AT4G33070
Thiamine pyrophosphate dependent pyruvate decarboxylase family protein
Chr1_+_3157501 0.13 AT1G09750.1
AT1G09750
Eukaryotic aspartyl protease family protein
Chr4_-_59495 0.13 AT4G00150.1
HAM3
GRAS family transcription factor
Chr2_+_18537177 0.13 AT2G44940.1
AT2G44940
Integrase-type DNA-binding superfamily protein
Chr5_-_19977620 0.13 AT5G49280.1
AT5G49280
hydroxyproline-rich glycoprotein family protein
Chr5_-_6234251 0.13 AT5G18690.1
AGP25
arabinogalactan protein 25
Chr2_+_15119516 0.13 AT2G36010.3
AT2G36010.1
AT2G36010.2
E2F3
E2F transcription factor 3
Chr1_-_1349478 0.13 AT1G04800.1
AT1G04800
glycine-rich protein
Chr3_-_6716178 0.13 AT3G19380.1
PUB25
plant U-box 25
Chr3_-_15617309 0.13 AT3G43720.1
LTPG2
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr4_+_14192569 0.13 AT4G28720.1
YUC8
Flavin-binding monooxygenase family protein
Chr5_+_4345526 0.13 AT5G13530.2
KEG
protein kinases;ubiquitin-protein ligase
Chr1_+_3659204 0.13 AT1G10950.1
TMN1
transmembrane nine 1
Chr1_+_852151 0.13 AT1G03440.1
AT1G03440
Leucine-rich repeat (LRR) family protein
Chr5_+_24732597 0.12 AT5G61490.1
AT5G61490
transmembrane protein
Chr5_+_15439249 0.12 AT5G38560.1
PERK8
Protein kinase superfamily protein
Chr1_+_30135024 0.12 AT1G80110.1
PP2-B11
phloem protein 2-B11
Chr5_-_26246960 0.12 AT5G65660.1
AT5G65660
hydroxyproline-rich glycoprotein family protein
Chr5_-_17941646 0.12 AT5G44540.1
AT5G44540
Tapetum specific protein TAP35/TAP44
Chr2_-_10446434 0.12 AT2G24580.1
AT2G24580
FAD-dependent oxidoreductase family protein
Chr1_+_2927502 0.12 AT1G09070.1
SRC2
soybean gene regulated by cold-2
Chr1_+_789820 0.12 AT1G03230.1
AT1G03230
Eukaryotic aspartyl protease family protein
Chr3_-_15617149 0.12 AT3G43720.2
LTPG2
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein

Network of associatons between targets according to the STRING database.

First level regulatory network of AT5G63090

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 GO:0015709 thiosulfate transport(GO:0015709) succinate transmembrane transport(GO:0071422)
0.1 0.7 GO:0046622 positive regulation of organ growth(GO:0046622)
0.1 0.4 GO:0080170 hydrogen peroxide transmembrane transport(GO:0080170)
0.1 0.4 GO:0008615 pyridoxine biosynthetic process(GO:0008615)
0.1 0.2 GO:0046037 GMP biosynthetic process(GO:0006177) GMP metabolic process(GO:0046037)
0.1 0.3 GO:0046498 S-adenosylmethionine cycle(GO:0033353) S-adenosylhomocysteine metabolic process(GO:0046498)
0.0 0.2 GO:0035264 multicellular organism growth(GO:0035264)
0.0 0.2 GO:0006564 L-serine biosynthetic process(GO:0006564)
0.0 0.6 GO:1900057 positive regulation of leaf senescence(GO:1900057)
0.0 0.1 GO:0019593 hexitol metabolic process(GO:0006059) hexitol biosynthetic process(GO:0019406) mannitol biosynthetic process(GO:0019593) mannitol metabolic process(GO:0019594)
0.0 0.1 GO:1900378 positive regulation of secondary metabolite biosynthetic process(GO:1900378)
0.0 0.1 GO:0099636 cytoplasmic streaming(GO:0099636)
0.0 0.2 GO:0048442 sepal development(GO:0048442) flower calyx development(GO:0048464)
0.0 0.1 GO:0015854 adenine transport(GO:0015853) guanine transport(GO:0015854)
0.0 0.3 GO:0009961 response to 1-aminocyclopropane-1-carboxylic acid(GO:0009961)
0.0 0.1 GO:0048657 anther wall tapetum formation(GO:0048656) anther wall tapetum cell differentiation(GO:0048657)
0.0 0.1 GO:0046391 5-phosphoribose 1-diphosphate biosynthetic process(GO:0006015) 5-phosphoribose 1-diphosphate metabolic process(GO:0046391)
0.0 0.3 GO:0051865 protein autoubiquitination(GO:0051865)
0.0 0.2 GO:1901001 negative regulation of response to salt stress(GO:1901001)
0.0 0.1 GO:0006307 DNA dealkylation involved in DNA repair(GO:0006307)
0.0 0.1 GO:0000706 meiotic DNA double-strand break processing(GO:0000706) DNA double-strand break processing(GO:0000729)
0.0 0.1 GO:0045764 positive regulation of cellular amine metabolic process(GO:0033240) positive regulation of cellular amino acid metabolic process(GO:0045764)
0.0 0.1 GO:0015697 quaternary ammonium group transport(GO:0015697)
0.0 0.1 GO:0015689 molybdate ion transport(GO:0015689)
0.0 0.1 GO:0060776 simple leaf morphogenesis(GO:0060776)
0.0 0.2 GO:0009819 drought recovery(GO:0009819)
0.0 0.1 GO:1900151 regulation of nuclear-transcribed mRNA poly(A) tail shortening(GO:0060211) regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay(GO:1900151)
0.0 0.4 GO:0048826 cotyledon morphogenesis(GO:0048826)
0.0 0.1 GO:0000055 ribosomal large subunit export from nucleus(GO:0000055)
0.0 0.4 GO:0003333 amino acid transmembrane transport(GO:0003333)
0.0 0.1 GO:0031222 arabinan catabolic process(GO:0031222)
0.0 0.2 GO:0009864 induced systemic resistance, jasmonic acid mediated signaling pathway(GO:0009864)
0.0 0.1 GO:0050810 regulation of brassinosteroid biosynthetic process(GO:0010422) regulation of steroid metabolic process(GO:0019218) regulation of steroid biosynthetic process(GO:0050810) regulation of steroid hormone biosynthetic process(GO:0090030)
0.0 0.3 GO:0015743 malate transport(GO:0015743)
0.0 0.4 GO:0045926 negative regulation of growth(GO:0045926)
0.0 0.1 GO:1900034 regulation of cellular response to heat(GO:1900034)
0.0 0.1 GO:0090646 mitochondrial tRNA processing(GO:0090646)
0.0 0.1 GO:0070509 calcium ion import(GO:0070509)
0.0 0.2 GO:0048859 formation of organ boundary(GO:0010160) formation of anatomical boundary(GO:0048859)
0.0 0.2 GO:0006360 transcription from RNA polymerase I promoter(GO:0006360)
0.0 0.2 GO:2000142 regulation of DNA-templated transcription, initiation(GO:2000142)
0.0 0.2 GO:2000122 negative regulation of stomatal complex development(GO:2000122)
0.0 0.5 GO:0043562 cellular response to nitrogen levels(GO:0043562)
0.0 0.3 GO:0006636 unsaturated fatty acid biosynthetic process(GO:0006636)
0.0 0.1 GO:0009094 L-phenylalanine biosynthetic process(GO:0009094) erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process(GO:1902223)
0.0 0.2 GO:0006574 valine catabolic process(GO:0006574)
0.0 0.1 GO:0006482 protein demethylation(GO:0006482) protein dealkylation(GO:0008214) histone demethylation(GO:0016577) histone lysine demethylation(GO:0070076)
0.0 0.4 GO:0009828 plant-type cell wall loosening(GO:0009828)
0.0 0.0 GO:0002698 negative regulation of immune effector process(GO:0002698) negative regulation of defense response to virus(GO:0050687)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 GO:0070505 pollen coat(GO:0070505)
0.1 0.2 GO:0044420 extracellular matrix component(GO:0044420)
0.1 0.5 GO:0031588 nucleotide-activated protein kinase complex(GO:0031588)
0.0 0.1 GO:0002189 ribose phosphate diphosphokinase complex(GO:0002189)
0.0 0.3 GO:0000322 storage vacuole(GO:0000322) protein storage vacuole(GO:0000326)
0.0 0.1 GO:0034703 ion channel complex(GO:0034702) cation channel complex(GO:0034703)
0.0 0.2 GO:0031464 Cul4A-RING E3 ubiquitin ligase complex(GO:0031464)
0.0 0.2 GO:0000275 mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)(GO:0000275)
0.0 0.2 GO:1902562 NuA4 histone acetyltransferase complex(GO:0035267) H4/H2A histone acetyltransferase complex(GO:0043189) H4 histone acetyltransferase complex(GO:1902562)
0.0 0.1 GO:0030870 Mre11 complex(GO:0030870)
0.0 0.2 GO:0031012 extracellular matrix(GO:0031012)
0.0 0.3 GO:0005769 early endosome(GO:0005769)
0.0 3.8 GO:0031225 anchored component of membrane(GO:0031225)
0.0 0.1 GO:0045252 oxoglutarate dehydrogenase complex(GO:0045252)
0.0 2.3 GO:0009505 plant-type cell wall(GO:0009505)
0.0 0.2 GO:0030686 90S preribosome(GO:0030686)
0.0 0.1 GO:0031205 endoplasmic reticulum Sec complex(GO:0031205)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 GO:0036381 pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity(GO:0036381)
0.1 0.4 GO:0015117 thiosulfate transmembrane transporter activity(GO:0015117)
0.1 0.5 GO:0048030 disaccharide binding(GO:0048030) maltose binding(GO:1901982)
0.1 0.3 GO:0016802 adenosylhomocysteinase activity(GO:0004013) trialkylsulfonium hydrolase activity(GO:0016802)
0.1 0.1 GO:0015116 sulfate transmembrane transporter activity(GO:0015116)
0.1 0.2 GO:0050162 oxalate oxidase activity(GO:0050162)
0.1 0.2 GO:0008442 3-hydroxyisobutyrate dehydrogenase activity(GO:0008442)
0.1 0.2 GO:0015204 urea transmembrane transporter activity(GO:0015204)
0.1 0.2 GO:0080103 4-methylthiopropyl glucosinolate S-oxygenase activity(GO:0080103)
0.0 0.2 GO:0016656 monodehydroascorbate reductase (NADH) activity(GO:0016656)
0.0 0.2 GO:0004617 phosphoglycerate dehydrogenase activity(GO:0004617)
0.0 0.1 GO:0003861 3-isopropylmalate dehydratase activity(GO:0003861)
0.0 0.3 GO:0016621 cinnamoyl-CoA reductase activity(GO:0016621)
0.0 0.1 GO:0001130 bacterial-type RNA polymerase transcription factor activity, sequence-specific DNA binding(GO:0001130) bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding(GO:0001216)
0.0 0.1 GO:0032131 alkylated DNA binding(GO:0032131)
0.0 0.7 GO:0005199 structural constituent of cell wall(GO:0005199)
0.0 0.3 GO:0015140 malate transmembrane transporter activity(GO:0015140)
0.0 0.3 GO:0009979 16:0 monogalactosyldiacylglycerol desaturase activity(GO:0009979)
0.0 0.1 GO:0004749 ribose phosphate diphosphokinase activity(GO:0004749)
0.0 0.1 GO:1901474 L-ornithine transmembrane transporter activity(GO:0000064) azole transmembrane transporter activity(GO:1901474)
0.0 0.1 GO:0016856 racemase and epimerase activity, acting on hydroxy acids and derivatives(GO:0016856)
0.0 0.1 GO:0004148 dihydrolipoyl dehydrogenase activity(GO:0004148)
0.0 0.5 GO:0015174 basic amino acid transmembrane transporter activity(GO:0015174)
0.0 0.1 GO:0003849 3-deoxy-7-phosphoheptulonate synthase activity(GO:0003849)
0.0 0.1 GO:0046975 histone methyltransferase activity (H3-K36 specific)(GO:0046975)
0.0 0.1 GO:0015292 uniporter activity(GO:0015292)
0.0 0.2 GO:0103075 indole-3-pyruvate monooxygenase activity(GO:0103075)
0.0 0.1 GO:0010011 auxin binding(GO:0010011)
0.0 0.1 GO:0008381 mechanically-gated ion channel activity(GO:0008381) mechanically gated channel activity(GO:0022833)
0.0 0.1 GO:0016889 endodeoxyribonuclease activity, producing 3'-phosphomonoesters(GO:0016889)
0.0 0.1 GO:0016647 oxidoreductase activity, acting on the CH-NH group of donors, oxygen as acceptor(GO:0016647)
0.0 0.1 GO:0047274 galactinol-sucrose galactosyltransferase activity(GO:0047274)
0.0 0.2 GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor(GO:0016884)
0.0 0.1 GO:0001653 peptide receptor activity(GO:0001653)
0.0 0.3 GO:0052716 hydroquinone:oxygen oxidoreductase activity(GO:0052716)
0.0 0.1 GO:0004664 prephenate dehydratase activity(GO:0004664) arogenate dehydratase activity(GO:0047769)
0.0 0.1 GO:0046556 xylan 1,4-beta-xylosidase activity(GO:0009044) alpha-L-arabinofuranosidase activity(GO:0046556)
0.0 0.1 GO:0004709 MAP kinase kinase kinase activity(GO:0004709)
0.0 0.0 GO:0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity(GO:0008703)
0.0 0.4 GO:0000156 phosphorelay response regulator activity(GO:0000156)
0.0 0.0 GO:0008517 folic acid transporter activity(GO:0008517)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 PID HDAC CLASSII PATHWAY Signaling events mediated by HDAC Class II
0.0 0.1 PID AMB2 NEUTROPHILS PATHWAY amb2 Integrin signaling
0.0 0.1 PID MYC ACTIV PATHWAY Validated targets of C-MYC transcriptional activation
0.0 0.1 PID BARD1 PATHWAY BARD1 signaling events

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.6 REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION Genes involved in Factors involved in megakaryocyte development and platelet production
0.0 0.1 REACTOME PRE NOTCH EXPRESSION AND PROCESSING Genes involved in Pre-NOTCH Expression and Processing
0.0 0.2 REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES Genes involved in Chemokine receptors bind chemokines
0.0 0.1 REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT Genes involved in Lipid digestion, mobilization, and transport