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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT5G62470

Z-value: 0.93

Transcription factors associated with AT5G62470

Gene Symbol Gene ID Gene Info
AT5G62470 myb domain protein 96

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
MYB96arTal_v1_Chr5_-_25081141_250811410.381.9e-01Click!

Activity profile of AT5G62470 motif

Sorted Z-values of AT5G62470 motif

Promoter Log-likelihood Transcript Gene Gene Info
Chr3_-_7796310 1.35 AT3G22120.1
AT3G22120.2
cell wall-plasma membrane linker protein
Chr4_-_7417873 1.10 AT4G12510.1
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr1_+_17382998 1.06 AT1G47395.1
hypothetical protein
Chr1_-_30186716 1.06 AT1G80280.1
alpha/beta-Hydrolases superfamily protein
Chr1_+_18035967 0.94 AT1G48750.1
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr1_+_28498821 0.94 AT1G75900.1
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr4_-_7410406 0.91 AT4G12490.1
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr3_-_723784 0.85 AT3G03130.1
lisH domain-like protein
Chr2_+_13987669 0.83 AT2G32960.1
Phosphotyrosine protein phosphatases superfamily protein
Chr1_+_16263805 0.82 AT1G43160.1
related to AP2 6
Chr4_+_12660687 0.80 AT4G24510.1
HXXXD-type acyl-transferase family protein
Chr3_-_23046153 0.79 AT3G62270.1
HCO3- transporter family
Chr1_-_17983377 0.79 AT1G48630.1
receptor for activated C kinase 1B
Chr4_+_9028262 0.78 AT4G15910.1
drought-induced 21
Chr5_+_4826141 0.78 AT5G14920.1
AT5G14920.2
Gibberellin-regulated family protein
Chr3_-_20903080 0.77 AT3G56370.1
Leucine-rich repeat protein kinase family protein
Chr3_-_19629204 0.72 AT3G52930.1
Aldolase superfamily protein
Chr3_-_19139423 0.72 AT3G51600.1
lipid transfer protein 5
Chr5_+_17130186 0.72 AT5G42720.1
Glycosyl hydrolase family 17 protein
Chr5_-_1742161 0.71 AT5G05790.2
AT5G05790.1
Duplicated homeodomain-like superfamily protein
Chr4_-_17267472 0.70 AT4G36610.1
alpha/beta-Hydrolases superfamily protein
Chr4_-_810574 0.70 AT4G01870.1
AT4G01870.2
tolB protein-like protein
Chr4_-_8050157 0.69 AT4G13930.1
serine hydroxymethyltransferase 4
Chr4_-_15022445 0.66 AT4G30850.2
AT4G30850.1
heptahelical transmembrane protein2
Chr4_+_11754912 0.65 AT4G22214.1
Defensin-like (DEFL) family protein
Chr1_-_6908805 0.64 AT1G19900.1
glyoxal oxidase-related protein
Chr4_+_11763625 0.63 AT4G22235.1
AT4G22235.2
defensin-like protein
Chr3_+_18249663 0.63 AT3G49220.2
AT3G49220.3
AT3G49220.1
Plant invertase/pectin methylesterase inhibitor superfamily
Chr5_-_6547127 0.62 AT5G19410.1
AT5G19410.2
ABC-2 type transporter family protein
Chr2_-_17161293 0.61 AT2G41170.2
AT2G41170.1
AT2G41170.3
F-box family protein
Chr3_-_13035440 0.59 AT3G32030.1
Terpenoid cyclases/Protein prenyltransferases superfamily protein
Chr1_+_6398531 0.59 AT1G18590.1
sulfotransferase 17
Chr5_-_4764767 0.59 AT5G14750.3
AT5G14750.1
AT5G14750.2
myb domain protein 66
Chr4_-_12339967 0.58 AT4G23690.1
Disease resistance-responsive (dirigent-like protein) family protein
Chr3_+_2379128 0.58 AT3G07430.1
YGGT family protein
Chr3_+_22340859 0.57 AT3G60450.2
AT3G60450.1
Phosphoglycerate mutase family protein
Chr5_+_20239293 0.57 AT5G49810.1
methionine S-methyltransferase
Chr5_+_280674 0.56 AT5G01740.1
Nuclear transport factor 2 (NTF2) family protein
Chr5_-_4566988 0.56 AT5G14150.1
AT5G14150.2
Emb:.1 protein, putative (Protein of unknown function, DUF642)
Chr3_-_17008528 0.56 AT3G46280.1
kinase-like protein
Chr3_-_7590998 0.55 AT3G21540.1
transducin family protein / WD-40 repeat family protein
Chr2_-_15560755 0.54 AT2G37040.1
PHE ammonia lyase 1
Chr2_+_12805667 0.54 AT2G30010.2
AT2G30010.1
TRICHOME BIREFRINGENCE-LIKE 45
Chr4_-_13123354 0.54 AT4G25790.1
CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein
Chr4_+_13830827 0.53 AT4G27720.1
Major facilitator superfamily protein
Chr5_-_779424 0.52 AT5G03260.1
laccase 11
Chr1_-_18061257 0.52 AT1G48830.2
AT1G48830.1
Ribosomal protein S7e family protein
Chr3_+_3521329 0.52 AT3G11250.1
Ribosomal protein L10 family protein
Chr1_-_1122786 0.52 AT1G04220.1
3-ketoacyl-CoA synthase 2
Chr1_-_29064637 0.51 AT1G77330.1
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr1_-_2392500 0.51 AT1G07720.1
AT1G07720.2
3-ketoacyl-CoA synthase 3
Chr5_-_2633850 0.51 AT5G08180.2
AT5G08180.1
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein
Chr1_+_3449567 0.50 AT1G10480.1
zinc finger protein 5
Chr3_-_18492241 0.50 AT3G49860.1
ADP-ribosylation factor-like A1B
Chr1_+_28098464 0.50 AT1G74790.1
catalytics
Chr1_-_25870227 0.49 AT1G68825.1
ROTUNDIFOLIA like 15
Chr5_-_19040456 0.48 AT5G46900.1
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr1_+_9531809 0.48 AT1G27450.1
AT1G27450.2
AT1G27450.3
adenine phosphoribosyl transferase 1
Chr2_+_8940833 0.48 AT2G20750.2
AT2G20750.1
expansin B1
Chr5_-_20468128 0.48 AT5G50300.1
AT5G50300.2
Xanthine/uracil permease family protein
Chr1_-_22871298 0.48 AT1G61890.3
AT1G61890.1
AT1G61890.2
MATE efflux family protein
Chr2_+_10177776 0.47 AT2G23910.2
AT2G23910.3
AT2G23910.1
AT2G23910.4
NAD(P)-binding Rossmann-fold superfamily protein
Chr3_+_7887276 0.47 AT3G22310.1
AT3G22310.2
putative mitochondrial RNA helicase 1
Chr5_-_5866809 0.46 AT5G17770.1
NADH:cytochrome B5 reductase 1
Chr1_+_9532179 0.46 AT1G27450.4
adenine phosphoribosyl transferase 1
Chr4_-_16344818 0.45 AT4G34131.1
UDP-glucosyl transferase 73B3
Chr5_+_17585523 0.45 AT5G43760.1
3-ketoacyl-CoA synthase 20
Chr3_+_9788231 0.45 AT3G26618.1
eukaryotic release factor 1-3
Chr5_-_1139631 0.45 AT5G04150.2
AT5G04150.1
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr5_+_9234600 0.44 AT5G26310.1
UDP-Glycosyltransferase superfamily protein
Chr4_+_929869 0.44 AT4G02100.1
Heat shock protein DnaJ with tetratricopeptide repeat-containing protein
Chr3_+_365537 0.44 AT3G02090.1
AT3G02090.2
Insulinase (Peptidase family M16) protein
Chr2_+_16130290 0.44 AT2G38540.1
lipid transfer protein 1
Chr4_+_14894073 0.44 AT4G30470.1
NAD(P)-binding Rossmann-fold superfamily protein
Chr4_+_16746525 0.43 AT4G35190.2
Putative lysine decarboxylase family protein
Chr4_+_6869863 0.43 AT4G11290.1
Peroxidase superfamily protein
Chr3_-_15617149 0.43 AT3G43720.2
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr1_+_23727794 0.42 AT1G63930.1
from the Czech 'roh' meaning 'corner'
Chr1_-_28915102 0.42 AT1G76952.1
inflorescence deficient in abscission (IDA)-like 5
Chr2_+_19486842 0.42 AT2G47490.1
NAD+ transporter 1
Chr3_+_22151164 0.42 AT3G59970.3
AT3G59970.2
AT3G59970.1
methylenetetrahydrofolate reductase 1
Chr3_+_22630331 0.42 AT3G61150.1
homeodomain GLABROUS 1
Chr1_-_28189765 0.42 AT1G75090.1
DNA glycosylase superfamily protein
Chr1_+_19902474 0.42 AT1G53345.1
DHHA1 domain protein
Chr5_+_26253408 0.42 AT5G65670.1
indole-3-acetic acid inducible 9
Chr1_+_10078189 0.41 AT1G28680.1
AT1G28680.2
HXXXD-type acyl-transferase family protein
Chr4_-_2388105 0.41 AT4G04700.1
calcium-dependent protein kinase 27
Chr5_+_26253947 0.41 AT5G65670.2
indole-3-acetic acid inducible 9
Chr5_-_18010542 0.41 AT5G44635.2
AT5G44635.1
minichromosome maintenance (MCM2/3/5) family protein
Chr5_-_3300151 0.41 AT5G10480.2
AT5G10480.3
AT5G10480.1
Protein-tyrosine phosphatase-like, PTPLA
Chr5_-_21751338 0.41 AT5G53540.1
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr3_-_9471039 0.41 AT3G25882.1
NIM1-interacting 2
Chr4_+_18291218 0.41 AT4G39330.1
AT4G39330.2
cinnamyl alcohol dehydrogenase 9
Chr5_+_21700187 0.41 AT5G53460.1
AT5G53460.3
AT5G53460.2
NADH-dependent glutamate synthase 1
Chr5_+_6290358 0.40 AT5G18860.1
AT5G18860.2
inosine-uridine preferring nucleoside hydrolase family protein
Chr2_+_1531148 0.40 AT2G04400.1
Aldolase-type TIM barrel family protein
Chr1_-_18068090 0.40 AT1G48850.2
AT1G48850.3
AT1G48850.1
chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase
Chr5_+_9835884 0.40 AT5G27770.1
Ribosomal L22e protein family
Chr3_-_15617309 0.40 AT3G43720.1
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr3_+_634465 0.39 AT3G02880.1
Leucine-rich repeat protein kinase family protein
Chr2_+_11706028 0.39 AT2G27360.1
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr4_+_16746189 0.39 AT4G35190.1
Putative lysine decarboxylase family protein
Chr3_-_21103719 0.39 AT3G57030.1
Calcium-dependent phosphotriesterase superfamily protein
Chr1_+_773358 0.39 AT1G03180.3
AT1G03180.1
AT1G03180.2
AT1G03180.4
AT1G03180.5
AT1G03180.6
non-structural protein
Chr1_-_25973505 0.38 AT1G69080.2
AT1G69080.1
Adenine nucleotide alpha hydrolases-like superfamily protein
Chr2_-_807756 0.38 AT2G02820.3
AT2G02820.1
AT2G02820.2
myb domain protein 88
Chr1_+_12429846 0.38 AT1G34130.1
staurosporin and temperature sensitive 3-like b
Chr4_+_17254290 0.38 AT4G36570.1
RAD-like 3
Chr1_+_6886669 0.38 AT1G19850.1
Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-like protein
Chr1_-_7830275 0.38 AT1G22180.1
AT1G22180.3
AT1G22180.2
AT1G22180.4
Sec14p-like phosphatidylinositol transfer family protein
Chr1_-_22391165 0.37 AT1G60810.2
AT1G60810.1
ATP-citrate lyase A-2
Chr4_+_16022269 0.37 AT4G33220.1
AT4G33220.2
pectin methylesterase 44
Chr2_+_19317126 0.37 AT2G47010.3
AT2G47010.1
AT2G47010.2
calcium/calcium/calmodulin-dependent Serine/Threonine-kinase
Chr5_+_14681348 0.37 AT5G37130.1
Protein prenylyltransferase superfamily protein
Chr1_+_6886867 0.37 AT1G19850.2
Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-like protein
Chr1_-_473160 0.37 AT1G02360.1
AT1G02360.2
AT1G02360.3
Chitinase family protein
Chr5_-_358962 0.37 AT5G01910.2
AT5G01910.1
myelin transcription factor
Chr3_+_6105908 0.37 AT3G17840.1
receptor-like kinase 902
Chr1_+_23911024 0.37 AT1G64390.1
glycosyl hydrolase 9C2
Chr4_-_7470737 0.36 AT4G12650.1
Endomembrane protein 70 protein family
Chr3_-_19839983 0.36 AT3G53510.1
ABC-2 type transporter family protein
Chr5_+_6938417 0.36 AT5G20500.1
Glutaredoxin family protein
Chr1_+_10321011 0.36 AT1G29500.1
SAUR-like auxin-responsive protein family
Chr1_+_3284073 0.36 AT1G10060.5
AT1G10060.4
AT1G10060.6
AT1G10060.7
AT1G10060.1
AT1G10060.2
branched-chain amino acid transaminase 1
Chr4_-_16491054 0.36 AT4G34500.1
Protein kinase superfamily protein
Chr4_+_10861382 0.36 AT4G20070.1
AT4G20070.2
allantoate amidohydrolase
Chr3_-_3534958 0.36 AT3G11280.2
AT3G11280.1
Duplicated homeodomain-like superfamily protein
Chr4_+_16130593 0.36 AT4G33540.1
AT4G33540.2
metallo-beta-lactamase family protein
Chr2_-_14965438 0.35 AT2G35620.1
AT2G35620.3
AT2G35620.2
Leucine-rich repeat protein kinase family protein
Chr4_-_8303996 0.35 AT4G14420.1
HR-like lesion-inducing protein-like protein
Chr2_+_17728479 0.35 AT2G42580.1
tetratricopetide-repeat thioredoxin-like 3
Chr4_+_15599475 0.35 AT4G32300.1
S-domain-2 5
Chr4_+_16131373 0.34 AT4G33540.3
metallo-beta-lactamase family protein
Chr3_+_16466144 0.34 AT3G45010.1
serine carboxypeptidase-like 48
Chr3_+_6086909 0.34 AT3G17780.1
B-cell receptor-associated-like protein
Chr2_-_18706266 0.34 AT2G45400.4
AT2G45400.2
AT2G45400.1
NAD(P)-binding Rossmann-fold superfamily protein
Chr1_+_21502905 0.33 AT1G58070.1
WEB family protein
Chr2_+_7271674 0.33 AT2G16750.1
kinase with adenine nucleotide alpha hydrolases-like domain-containing protein
Chr5_+_25236945 0.33 AT5G62880.2
AT5G62880.1
RAC-like 10
Chr4_+_6564183 0.33 AT4G10620.1
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr3_-_8290164 0.33 AT3G23230.1
Integrase-type DNA-binding superfamily protein
Chr2_-_10028777 0.32 AT2G23550.1
AT2G23550.2
AT2G23550.4
AT2G23550.3
methyl esterase 6
Chr5_+_19046339 0.32 AT5G46910.1
AT5G46910.2
Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein
Chr1_-_10273821 0.32 AT1G29350.1
RNA polymerase II degradation factor-like protein (DUF1296)
Chr1_-_1333651 0.32 AT1G04750.1
vesicle-associated membrane protein 721
Chr3_+_6453303 0.32 AT3G18740.1
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein
Chr5_+_8323895 0.32 AT5G24380.1
YELLOW STRIPE like 2
Chr5_+_4206738 0.32 AT5G13200.2
AT5G13200.1
GRAM domain family protein
Chr1_+_17065858 0.32 AT1G45130.2
beta-galactosidase 5
Chr3_-_8734562 0.31 AT3G24170.3
AT3G24170.1
glutathione-disulfide reductase
Chr3_-_9996025 0.31 AT3G27100.2
AT3G27100.1
transcription/mRNA export factor
Chr5_+_16213036 0.31 AT5G40480.1
embryo defective 3012
Chr5_+_7861737 0.31 AT5G23360.1
GRAM domain-containing protein / ABA-responsive protein-like protein
Chr4_-_15312987 0.31 AT4G31590.1
Cellulose-synthase-like C5
Chr5_+_19229162 0.31 AT5G47400.1
sphingomyelin phosphodiesterase
Chr1_-_28727111 0.31 AT1G76550.1
Phosphofructokinase family protein
Chr4_+_7542233 0.30 AT4G12870.1
Gamma interferon responsive lysosomal thiol (GILT) reductase family protein
Chr1_-_26809520 0.30 AT1G71070.1
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
Chr5_+_1145431 0.30 AT5G04170.1
Calcium-binding EF-hand family protein
Chr1_+_23252321 0.30 AT1G62790.2
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr1_-_22649521 0.30 AT1G61380.1
S-domain-1 29
Chr2_+_7271012 0.29 AT2G16750.2
kinase with adenine nucleotide alpha hydrolases-like domain-containing protein
Chr5_+_3127828 0.29 AT5G10010.1
myosin-H heavy protein
Chr5_+_23928954 0.29 AT5G59320.1
lipid transfer protein 3
Chr1_+_18351324 0.29 AT1G49580.1
Calcium-dependent protein kinase (CDPK) family protein
Chr3_-_20684063 0.29 AT3G55730.1
myb domain protein 109
Chr1_-_20598675 0.28 AT1G55210.2
AT1G55210.1
Disease resistance-responsive (dirigent-like protein) family protein
Chr3_+_682054 0.28 AT3G03030.1
AT3G03030.2
F-box/RNI-like superfamily protein
Chr3_+_23384988 0.28 AT3G63300.1
AT3G63300.2
FORKED 1
Chr1_+_27484240 0.28 AT1G73080.1
PEP1 receptor 1
Chr1_-_22650072 0.28 AT1G61380.2
S-domain-1 29
Chr2_-_16432751 0.28 AT2G39350.1
ABC-2 type transporter family protein
Chr2_+_18364652 0.28 AT2G44490.1
Glycosyl hydrolase superfamily protein
Chr1_-_1333260 0.28 AT1G04750.4
AT1G04750.3
AT1G04750.2
vesicle-associated membrane protein 721
Chr5_-_21589255 0.28 AT5G53210.1
AT5G53210.2
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr4_+_17440177 0.28 AT4G36990.1
heat shock factor 4
Chr5_-_24987811 0.28 AT5G62210.1
Embryo-specific protein 3, (ATS3)
Chr1_+_20143144 0.28 AT1G53940.1
AT1G53940.2
GDSL-motif lipase 2
Chr4_+_17150740 0.28 AT4G36250.1
aldehyde dehydrogenase 3F1
Chr5_-_26869719 0.27 AT5G67350.1
hypothetical protein
Chr4_-_17181261 0.27 AT4G36360.2
beta-galactosidase 3
Chr1_+_17065111 0.27 AT1G45130.1
beta-galactosidase 5
Chr3_-_4330218 0.27 AT3G13330.1
proteasome activating protein 200
Chr5_+_5148722 0.27 AT5G15790.3
AT5G15790.4
AT5G15790.2
AT5G15790.5
AT5G15790.1
RING/U-box superfamily protein
Chr1_+_5124670 0.27 AT1G14860.1
nudix hydrolase homolog 18
Chr4_+_15003146 0.27 AT4G30810.1
serine carboxypeptidase-like 29
Chr2_-_19541473 0.27 AT2G47650.2
AT2G47650.1
UDP-xylose synthase 4
Chr5_-_8243357 0.27 AT5G24270.4
AT5G24270.3
AT5G24270.2
Calcium-binding EF-hand family protein
Chr3_-_15214947 0.27 AT3G43240.1
ARID/BRIGHT DNA-binding domain-containing protein
Chr4_-_17181466 0.27 AT4G36360.1
beta-galactosidase 3
Chr4_+_16842174 0.27 AT4G35460.1
NADPH-dependent thioredoxin reductase B
Chr4_+_15120824 0.27 AT4G31080.1
AT4G31080.2
integral membrane metal-binding family protein (DUF2296)
Chr3_-_8734362 0.27 AT3G24170.2
glutathione-disulfide reductase
Chr1_-_21188369 0.26 AT1G56550.1
AT1G56550.2
RhamnoGalacturonan specific Xylosyltransferase 1
Chr1_+_23252140 0.26 AT1G62790.1
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr5_+_18218586 0.26 AT5G45100.2
AT5G45100.1
SBP (S-ribonuclease binding protein) family protein
Chr3_+_5264001 0.26 AT3G15540.1
indole-3-acetic acid inducible 19
Chr3_+_20028052 0.26 AT3G54090.1
fructokinase-like 1
Chr5_-_19135414 0.26 AT5G47110.1
Chlorophyll A-B binding family protein
Chr5_-_4764527 0.26 AT5G14750.4
myb domain protein 66

Network of associatons between targets according to the STRING database.

First level regulatory network of AT5G62470

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.6 GO:0045002 DNA double-strand break processing involved in repair via single-strand annealing(GO:0010792) double-strand break repair via single-strand annealing(GO:0045002)
0.2 0.6 GO:0090143 nucleoid organization(GO:0090143)
0.2 0.6 GO:0032490 detection of molecule of bacterial origin(GO:0032490)
0.2 0.5 GO:0031120 snRNA pseudouridine synthesis(GO:0031120)
0.2 0.5 GO:0042539 hypotonic salinity response(GO:0042539)
0.1 0.6 GO:0001887 selenium compound metabolic process(GO:0001887)
0.1 0.4 GO:0043132 NAD transport(GO:0043132)
0.1 0.4 GO:0006148 inosine catabolic process(GO:0006148) inosine metabolic process(GO:0046102)
0.1 0.8 GO:0072344 rescue of stalled ribosome(GO:0072344)
0.1 0.5 GO:0015854 adenine transport(GO:0015853) guanine transport(GO:0015854)
0.1 0.6 GO:0009806 lignan metabolic process(GO:0009806) lignan biosynthetic process(GO:0009807)
0.1 0.6 GO:0019218 regulation of brassinosteroid biosynthetic process(GO:0010422) regulation of steroid metabolic process(GO:0019218) regulation of steroid biosynthetic process(GO:0050810) regulation of steroid hormone biosynthetic process(GO:0090030)
0.1 0.4 GO:0002184 cytoplasmic translational termination(GO:0002184)
0.1 0.5 GO:0019336 phenol-containing compound catabolic process(GO:0019336)
0.1 0.3 GO:0033258 plastid DNA metabolic process(GO:0033258) plastid DNA replication(GO:0033259)
0.1 0.9 GO:0006168 adenine salvage(GO:0006168) purine nucleobase salvage(GO:0043096)
0.1 0.4 GO:0097054 L-glutamate biosynthetic process(GO:0097054)
0.1 0.7 GO:0019264 L-serine catabolic process(GO:0006565) glycine biosynthetic process from serine(GO:0019264) response to tetrahydrofolate(GO:1904481) cellular response to tetrahydrofolate(GO:1904482)
0.1 0.4 GO:0050878 regulation of body fluid levels(GO:0050878) multicellular organismal water homeostasis(GO:0050891)
0.1 0.3 GO:0090547 response to low humidity(GO:0090547)
0.1 1.7 GO:0042761 very long-chain fatty acid biosynthetic process(GO:0042761)
0.1 1.0 GO:0048354 mucilage biosynthetic process involved in seed coat development(GO:0048354)
0.1 0.2 GO:0048833 specification of organ number(GO:0048832) specification of floral organ number(GO:0048833)
0.1 0.2 GO:0048873 tissue homeostasis(GO:0001894) homeostasis of number of meristem cells(GO:0007639) homeostasis of number of cells(GO:0048872) homeostasis of number of cells within a tissue(GO:0048873)
0.1 0.3 GO:2001009 regulation of plant-type cell wall cellulose biosynthetic process(GO:2001009)
0.1 0.2 GO:0070922 miRNA loading onto RISC involved in gene silencing by miRNA(GO:0035280) small RNA loading onto RISC(GO:0070922)
0.1 0.3 GO:0033306 phytol metabolic process(GO:0033306)
0.1 0.5 GO:0015689 molybdate ion transport(GO:0015689)
0.1 0.7 GO:0009942 longitudinal axis specification(GO:0009942)
0.1 0.4 GO:0010136 ureide metabolic process(GO:0010135) ureide catabolic process(GO:0010136)
0.1 0.2 GO:0070150 mitochondrial glycyl-tRNA aminoacylation(GO:0070150)
0.1 0.5 GO:0019079 viral genome replication(GO:0019079)
0.1 0.4 GO:0035999 tetrahydrofolate interconversion(GO:0035999)
0.1 0.4 GO:1902969 mitotic DNA replication(GO:1902969)
0.1 0.3 GO:0010142 farnesyl diphosphate biosynthetic process, mevalonate pathway(GO:0010142) isoprenoid biosynthetic process via mevalonate(GO:1902767)
0.1 0.5 GO:0009920 cell plate formation involved in plant-type cell wall biogenesis(GO:0009920)
0.1 0.8 GO:0048496 maintenance of organ identity(GO:0048496) maintenance of floral organ identity(GO:0048497)
0.1 1.5 GO:0010345 suberin biosynthetic process(GO:0010345)
0.0 0.3 GO:0035335 peptidyl-tyrosine dephosphorylation(GO:0035335)
0.0 0.2 GO:0048479 style development(GO:0048479) stigma development(GO:0048480)
0.0 0.4 GO:0010106 cellular response to iron ion starvation(GO:0010106)
0.0 0.2 GO:0000919 cell plate assembly(GO:0000919)
0.0 0.2 GO:0009113 purine nucleobase biosynthetic process(GO:0009113)
0.0 0.7 GO:0030388 fructose 1,6-bisphosphate metabolic process(GO:0030388)
0.0 0.3 GO:0010396 rhamnogalacturonan II biosynthetic process(GO:0010306) rhamnogalacturonan II metabolic process(GO:0010396)
0.0 0.7 GO:0046685 response to arsenic-containing substance(GO:0046685)
0.0 0.4 GO:0009423 chorismate biosynthetic process(GO:0009423)
0.0 0.5 GO:0048766 root hair initiation(GO:0048766)
0.0 0.5 GO:0006574 valine catabolic process(GO:0006574)
0.0 3.2 GO:0006869 lipid transport(GO:0006869)
0.0 0.9 GO:0009691 cytokinin biosynthetic process(GO:0009691)
0.0 0.3 GO:0070973 protein localization to endoplasmic reticulum exit site(GO:0070973)
0.0 0.3 GO:0033319 UDP-D-xylose metabolic process(GO:0033319) UDP-D-xylose biosynthetic process(GO:0033320)
0.0 0.6 GO:0042726 flavin-containing compound metabolic process(GO:0042726)
0.0 0.2 GO:0010424 DNA methylation on cytosine within a CG sequence(GO:0010424)
0.0 0.3 GO:0046294 formaldehyde catabolic process(GO:0046294)
0.0 0.2 GO:0016103 diterpenoid catabolic process(GO:0016103) gibberellin catabolic process(GO:0045487)
0.0 0.2 GO:0006123 mitochondrial electron transport, cytochrome c to oxygen(GO:0006123)
0.0 0.2 GO:0031572 mitotic G2 DNA damage checkpoint(GO:0007095) G2 DNA damage checkpoint(GO:0031572)
0.0 0.5 GO:0006949 syncytium formation(GO:0006949)
0.0 0.2 GO:0031930 mitochondria-nucleus signaling pathway(GO:0031930)
0.0 0.6 GO:0010305 leaf vascular tissue pattern formation(GO:0010305)
0.0 0.4 GO:0006032 aminoglycan catabolic process(GO:0006026) chitin metabolic process(GO:0006030) chitin catabolic process(GO:0006032) amino sugar catabolic process(GO:0046348) glucosamine-containing compound catabolic process(GO:1901072)
0.0 0.2 GO:1990937 xylan acetylation(GO:1990937)
0.0 0.1 GO:0033528 S-methylmethionine metabolic process(GO:0033477) S-methylmethionine cycle(GO:0033528)
0.0 0.1 GO:0046146 tetrahydrobiopterin biosynthetic process(GO:0006729) tetrahydrobiopterin metabolic process(GO:0046146)
0.0 0.3 GO:0006621 protein retention in ER lumen(GO:0006621)
0.0 0.4 GO:0050829 defense response to Gram-negative bacterium(GO:0050829)
0.0 0.2 GO:0006446 regulation of translational initiation(GO:0006446)
0.0 0.2 GO:0010603 regulation of cytoplasmic mRNA processing body assembly(GO:0010603)
0.0 0.2 GO:0052548 negative regulation of endopeptidase activity(GO:0010951) regulation of endopeptidase activity(GO:0052548)
0.0 0.4 GO:0010112 regulation of systemic acquired resistance(GO:0010112)
0.0 0.4 GO:0006085 acetyl-CoA biosynthetic process(GO:0006085)
0.0 0.2 GO:0042793 transcription from plastid promoter(GO:0042793)
0.0 0.1 GO:0000578 embryonic axis specification(GO:0000578)
0.0 0.3 GO:0010039 response to iron ion(GO:0010039)
0.0 0.4 GO:0010227 floral organ abscission(GO:0010227)
0.0 0.2 GO:0006002 fructose 6-phosphate metabolic process(GO:0006002)
0.0 0.2 GO:0009094 L-phenylalanine biosynthetic process(GO:0009094) erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process(GO:1902223)
0.0 0.9 GO:0002181 cytoplasmic translation(GO:0002181)
0.0 0.1 GO:0009819 drought recovery(GO:0009819)
0.0 0.3 GO:0019430 removal of superoxide radicals(GO:0019430) cellular response to oxygen radical(GO:0071450) cellular response to superoxide(GO:0071451)
0.0 0.2 GO:2000896 amylopectin biosynthetic process(GO:0010021) amylopectin metabolic process(GO:2000896)
0.0 0.2 GO:0007231 osmosensory signaling pathway(GO:0007231)
0.0 1.2 GO:0042274 ribosomal small subunit biogenesis(GO:0042274)
0.0 0.9 GO:0009809 lignin biosynthetic process(GO:0009809)
0.0 0.1 GO:0034308 primary alcohol metabolic process(GO:0034308)
0.0 0.2 GO:0030834 regulation of actin filament depolymerization(GO:0030834)
0.0 0.1 GO:1900036 positive regulation of cellular response to heat(GO:1900036)
0.0 0.2 GO:0008544 epidermis development(GO:0008544) epidermal cell differentiation(GO:0009913) epithelial cell differentiation(GO:0030855)
0.0 0.9 GO:0034605 cellular response to heat(GO:0034605)
0.0 0.2 GO:0010100 negative regulation of photomorphogenesis(GO:0010100)
0.0 0.6 GO:0019761 S-glycoside biosynthetic process(GO:0016144) glycosinolate biosynthetic process(GO:0019758) glucosinolate biosynthetic process(GO:0019761)
0.0 0.1 GO:0046513 ceramide biosynthetic process(GO:0046513)
0.0 0.1 GO:1901348 positive regulation of secondary cell wall biogenesis(GO:1901348) positive regulation of cell wall organization or biogenesis(GO:1903340)
0.0 0.4 GO:0006284 base-excision repair(GO:0006284)
0.0 0.1 GO:0009880 embryonic pattern specification(GO:0009880)
0.0 0.2 GO:0000054 ribosomal subunit export from nucleus(GO:0000054) ribosome localization(GO:0033750) establishment of ribosome localization(GO:0033753) rRNA-containing ribonucleoprotein complex export from nucleus(GO:0071428)
0.0 0.1 GO:0006102 isocitrate metabolic process(GO:0006102)
0.0 1.0 GO:0045165 cell fate commitment(GO:0045165)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 GO:0018444 translation release factor complex(GO:0018444)
0.1 0.5 GO:0072588 box H/ACA snoRNP complex(GO:0031429) box H/ACA RNP complex(GO:0072588)
0.1 0.5 GO:0034388 Pwp2p-containing subcomplex of 90S preribosome(GO:0034388)
0.1 0.3 GO:0010316 pyrophosphate-dependent phosphofructokinase complex(GO:0010316)
0.1 0.8 GO:0035861 site of double-strand break(GO:0035861)
0.1 0.4 GO:0009346 citrate lyase complex(GO:0009346)
0.0 0.4 GO:0042555 MCM complex(GO:0042555)
0.0 0.1 GO:0031897 Tic complex(GO:0031897)
0.0 0.4 GO:0005758 mitochondrial respiratory chain complex III(GO:0005750) mitochondrial intermembrane space(GO:0005758) respiratory chain complex III(GO:0045275)
0.0 0.2 GO:0016272 prefoldin complex(GO:0016272)
0.0 4.1 GO:0009505 plant-type cell wall(GO:0009505)
0.0 0.2 GO:0005763 mitochondrial small ribosomal subunit(GO:0005763)
0.0 0.2 GO:0005720 nuclear heterochromatin(GO:0005720)
0.0 1.5 GO:0015935 small ribosomal subunit(GO:0015935)
0.0 0.5 GO:0008287 protein serine/threonine phosphatase complex(GO:0008287) phosphatase complex(GO:1903293)
0.0 1.2 GO:0000138 Golgi trans cisterna(GO:0000138)
0.0 0.6 GO:0009504 cell plate(GO:0009504)
0.0 2.0 GO:0046658 anchored component of plasma membrane(GO:0046658)
0.0 0.3 GO:0005871 kinesin complex(GO:0005871)
0.0 0.2 GO:0000418 DNA-directed RNA polymerase IV complex(GO:0000418)
0.0 1.6 GO:0022625 cytosolic large ribosomal subunit(GO:0022625)
0.0 0.2 GO:0005801 cis-Golgi network(GO:0005801)
0.0 0.5 GO:0042644 chloroplast nucleoid(GO:0042644)
0.0 0.1 GO:0000445 transcription export complex(GO:0000346) THO complex part of transcription export complex(GO:0000445)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 0.8 GO:0032947 MAP-kinase scaffold activity(GO:0005078) protein kinase C binding(GO:0005080) protein complex scaffold(GO:0032947) signaling adaptor activity(GO:0035591)
0.2 0.6 GO:0047364 desulfoglucosinolate sulfotransferase activity(GO:0047364)
0.2 0.6 GO:0000403 Y-form DNA binding(GO:0000403) flap-structured DNA binding(GO:0070336)
0.1 0.4 GO:1990518 ATP-dependent 3'-5' DNA helicase activity(GO:0043140) single-stranded DNA-dependent ATP-dependent 3'-5' DNA helicase activity(GO:1990518)
0.1 0.5 GO:0045548 phenylalanine ammonia-lyase activity(GO:0045548)
0.1 0.5 GO:0034513 box H/ACA snoRNA binding(GO:0034513)
0.1 0.9 GO:0003999 adenine phosphoribosyltransferase activity(GO:0003999)
0.1 0.6 GO:1990825 sequence-specific mRNA binding(GO:1990825)
0.1 1.0 GO:0009922 fatty acid elongase activity(GO:0009922)
0.1 0.4 GO:0015930 glutamate synthase activity(GO:0015930) glutamate synthase (NADH) activity(GO:0016040) glutamate synthase activity, NAD(P)H as acceptor(GO:0045181)
0.1 0.4 GO:0047724 inosine nucleosidase activity(GO:0047724)
0.1 0.7 GO:0070905 glycine hydroxymethyltransferase activity(GO:0004372) serine binding(GO:0070905)
0.1 0.3 GO:0004421 hydroxymethylglutaryl-CoA synthase activity(GO:0004421)
0.1 0.3 GO:0001216 bacterial-type RNA polymerase transcription factor activity, sequence-specific DNA binding(GO:0001130) bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding(GO:0001216)
0.1 0.5 GO:0016653 oxidoreductase activity, acting on NAD(P)H, heme protein as acceptor(GO:0016653)
0.1 0.3 GO:0016504 peptidase activator activity(GO:0016504)
0.1 0.5 GO:0052656 L-leucine transaminase activity(GO:0052654) L-valine transaminase activity(GO:0052655) L-isoleucine transaminase activity(GO:0052656)
0.1 0.2 GO:0015026 coreceptor activity(GO:0015026)
0.1 0.3 GO:0015603 iron chelate transmembrane transporter activity(GO:0015603) iron-nicotianamine transmembrane transporter activity(GO:0051980)
0.1 0.3 GO:0047334 diphosphate-fructose-6-phosphate 1-phosphotransferase activity(GO:0047334)
0.1 0.5 GO:0015098 molybdate ion transmembrane transporter activity(GO:0015098)
0.1 0.4 GO:0004362 glutathione-disulfide reductase activity(GO:0004362)
0.1 0.3 GO:0004791 thioredoxin-disulfide reductase activity(GO:0004791)
0.1 0.4 GO:0003878 ATP citrate synthase activity(GO:0003878)
0.1 0.2 GO:0046593 mandelonitrile lyase activity(GO:0046593)
0.1 0.3 GO:0004028 3-chloroallyl aldehyde dehydrogenase activity(GO:0004028)
0.1 0.7 GO:0004332 fructose-bisphosphate aldolase activity(GO:0004332)
0.1 0.2 GO:0004820 glycine-tRNA ligase activity(GO:0004820)
0.0 0.1 GO:0045140 inositol phosphoceramide synthase activity(GO:0045140)
0.0 1.5 GO:0004725 protein tyrosine phosphatase activity(GO:0004725)
0.0 0.1 GO:0004450 isocitrate dehydrogenase (NADP+) activity(GO:0004450)
0.0 0.2 GO:0008835 diaminohydroxyphosphoribosylaminopyrimidine deaminase activity(GO:0008835)
0.0 0.4 GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor(GO:0016646)
0.0 0.5 GO:0048040 UDP-glucuronate decarboxylase activity(GO:0048040)
0.0 0.5 GO:0010294 abscisic acid glucosyltransferase activity(GO:0010294)
0.0 0.5 GO:0070180 large ribosomal subunit rRNA binding(GO:0070180)
0.0 0.4 GO:0008725 alkylbase DNA N-glycosylase activity(GO:0003905) DNA-3-methyladenine glycosylase activity(GO:0008725) DNA-3-methylbase glycosylase activity(GO:0043733)
0.0 0.3 GO:0010429 methyl-CpNpG binding(GO:0010428) methyl-CpNpN binding(GO:0010429)
0.0 0.2 GO:0004129 cytochrome-c oxidase activity(GO:0004129) heme-copper terminal oxidase activity(GO:0015002) oxidoreductase activity, acting on a heme group of donors(GO:0016675) oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor(GO:0016676)
0.0 0.2 GO:0004834 tryptophan synthase activity(GO:0004834)
0.0 0.3 GO:0001653 peptide receptor activity(GO:0001653) guanylate cyclase activity(GO:0004383)
0.0 0.4 GO:0008526 phosphatidylinositol transporter activity(GO:0008526)
0.0 0.3 GO:0043495 protein anchor(GO:0043495)
0.0 0.2 GO:0018708 thiol S-methyltransferase activity(GO:0018708)
0.0 0.3 GO:0004024 alcohol dehydrogenase activity, zinc-dependent(GO:0004024)
0.0 0.4 GO:0052747 sinapyl alcohol dehydrogenase activity(GO:0052747)
0.0 0.2 GO:0043682 copper-transporting ATPase activity(GO:0043682)
0.0 0.5 GO:0030515 snoRNA binding(GO:0030515)
0.0 0.2 GO:0016174 NAD(P)H oxidase activity(GO:0016174) oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor(GO:0050664)
0.0 0.3 GO:0046923 ER retention sequence binding(GO:0046923)
0.0 0.6 GO:0016844 strictosidine synthase activity(GO:0016844)
0.0 0.4 GO:0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines(GO:0016813)
0.0 0.2 GO:0003872 6-phosphofructokinase activity(GO:0003872)
0.0 0.3 GO:0035252 UDP-xylosyltransferase activity(GO:0035252)
0.0 0.2 GO:0047769 prephenate dehydratase activity(GO:0004664) arogenate dehydratase activity(GO:0047769)
0.0 0.2 GO:0090447 glycerol-3-phosphate 2-O-acyltransferase activity(GO:0090447)
0.0 0.4 GO:0051184 cofactor transporter activity(GO:0051184)
0.0 0.2 GO:0018685 alkane 1-monooxygenase activity(GO:0018685)
0.0 0.1 GO:0008898 S-adenosylmethionine-homocysteine S-methyltransferase activity(GO:0008898) betaine-homocysteine S-methyltransferase activity(GO:0047150)
0.0 0.4 GO:0102336 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338)
0.0 0.5 GO:0052716 hydroquinone:oxygen oxidoreductase activity(GO:0052716)
0.0 0.3 GO:0047631 ADP-ribose diphosphatase activity(GO:0047631)
0.0 0.5 GO:0004565 beta-galactosidase activity(GO:0004565)
0.0 0.6 GO:0008810 cellulase activity(GO:0008810)
0.0 0.3 GO:0019903 protein phosphatase binding(GO:0019903)
0.0 0.2 GO:0070181 small ribosomal subunit rRNA binding(GO:0070181)
0.0 0.5 GO:0005345 purine nucleobase transmembrane transporter activity(GO:0005345)
0.0 1.0 GO:0031625 ubiquitin protein ligase binding(GO:0031625)
0.0 0.2 GO:0008574 ATP-dependent microtubule motor activity, plus-end-directed(GO:0008574)
0.0 0.2 GO:0000014 single-stranded DNA endodeoxyribonuclease activity(GO:0000014)
0.0 0.1 GO:1990841 promoter-specific chromatin binding(GO:1990841)
0.0 0.2 GO:0008139 nuclear localization sequence binding(GO:0008139)
0.0 0.2 GO:0004017 adenylate kinase activity(GO:0004017)
0.0 0.3 GO:0003887 DNA-directed DNA polymerase activity(GO:0003887)
0.0 0.1 GO:0019534 tetracycline transporter activity(GO:0008493) toxin transporter activity(GO:0019534) antibiotic transporter activity(GO:0042895)
0.0 0.1 GO:0003933 GTP cyclohydrolase activity(GO:0003933)
0.0 1.0 GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds(GO:0016799)
0.0 0.4 GO:0004568 chitinase activity(GO:0004568)
0.0 0.8 GO:0004185 serine-type carboxypeptidase activity(GO:0004185)
0.0 0.7 GO:0005319 lipid transporter activity(GO:0005319)
0.0 0.3 GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water(GO:0016717)
0.0 0.0 GO:0004385 guanylate kinase activity(GO:0004385)
0.0 0.4 GO:0016838 carbon-oxygen lyase activity, acting on phosphates(GO:0016838)
0.0 0.6 GO:0009931 calmodulin-dependent protein kinase activity(GO:0004683) calcium-dependent protein serine/threonine kinase activity(GO:0009931) calcium-dependent protein kinase activity(GO:0010857)
0.0 0.5 GO:0016759 cellulose synthase activity(GO:0016759)
0.0 1.2 GO:0016298 lipase activity(GO:0016298)
0.0 0.1 GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor(GO:0016682)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.2 PID PLK1 PATHWAY PLK1 signaling events

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 REACTOME HDL MEDIATED LIPID TRANSPORT Genes involved in HDL-mediated lipid transport
0.1 0.4 REACTOME UNWINDING OF DNA Genes involved in Unwinding of DNA