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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT5G62470
Z-value: 0.93
Transcription factors associated with AT5G62470
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G62470
|
AT5G62470 | myb domain protein 96 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| MYB96 | arTal_v1_Chr5_-_25081141_25081141 | 0.38 | 1.9e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_-_7796310_7796460 Show fit | 1.35 |
AT3G22120.1
AT3G22120.2 |
cell wall-plasma membrane linker protein |
|
| arTal_v1_Chr4_-_7417873_7417873 Show fit | 1.10 |
AT4G12510.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr1_+_17382998_17382998 Show fit | 1.06 |
AT1G47395.1
|
hypothetical protein |
|
| arTal_v1_Chr1_-_30186716_30186716 Show fit | 1.06 |
AT1G80280.1
|
alpha/beta-Hydrolases superfamily protein |
|
| arTal_v1_Chr1_+_18035967_18035967 Show fit | 0.94 |
AT1G48750.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr1_+_28498821_28498821 Show fit | 0.94 |
AT1G75900.1
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
|
| arTal_v1_Chr4_-_7410406_7410406 Show fit | 0.91 |
AT4G12490.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr3_-_723784_723784 Show fit | 0.85 |
AT3G03130.1
|
lisH domain-like protein |
|
| arTal_v1_Chr2_+_13987669_13987669 Show fit | 0.83 |
AT2G32960.1
|
Phosphotyrosine protein phosphatases superfamily protein |
|
| arTal_v1_Chr1_+_16263805_16263805 Show fit | 0.82 |
AT1G43160.1
|
related to AP2 6 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G62470
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 3.2 | GO:0006869 | lipid transport(GO:0006869) |
| 0.1 | 1.7 | GO:0042761 | very long-chain fatty acid biosynthetic process(GO:0042761) |
| 0.1 | 1.5 | GO:0010345 | suberin biosynthetic process(GO:0010345) |
| 0.0 | 1.2 | GO:0042274 | ribosomal small subunit biogenesis(GO:0042274) |
| 0.1 | 1.0 | GO:0048354 | mucilage biosynthetic process involved in seed coat development(GO:0048354) |
| 0.0 | 1.0 | GO:0045165 | cell fate commitment(GO:0045165) |
| 0.1 | 0.9 | GO:0006168 | adenine salvage(GO:0006168) purine nucleobase salvage(GO:0043096) |
| 0.0 | 0.9 | GO:0009691 | cytokinin biosynthetic process(GO:0009691) |
| 0.0 | 0.9 | GO:0002181 | cytoplasmic translation(GO:0002181) |
| 0.0 | 0.9 | GO:0009809 | lignin biosynthetic process(GO:0009809) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 4.1 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.0 | 2.0 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.0 | 1.6 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
| 0.0 | 1.5 | GO:0015935 | small ribosomal subunit(GO:0015935) |
| 0.0 | 1.2 | GO:0000138 | Golgi trans cisterna(GO:0000138) |
| 0.1 | 0.8 | GO:0035861 | site of double-strand break(GO:0035861) |
| 0.0 | 0.6 | GO:0009504 | cell plate(GO:0009504) |
| 0.1 | 0.5 | GO:0072588 | box H/ACA snoRNP complex(GO:0031429) box H/ACA RNP complex(GO:0072588) |
| 0.1 | 0.5 | GO:0034388 | Pwp2p-containing subcomplex of 90S preribosome(GO:0034388) |
| 0.0 | 0.5 | GO:0008287 | protein serine/threonine phosphatase complex(GO:0008287) phosphatase complex(GO:1903293) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 1.5 | GO:0004725 | protein tyrosine phosphatase activity(GO:0004725) |
| 0.0 | 1.2 | GO:0016298 | lipase activity(GO:0016298) |
| 0.1 | 1.0 | GO:0009922 | fatty acid elongase activity(GO:0009922) |
| 0.0 | 1.0 | GO:0031625 | ubiquitin protein ligase binding(GO:0031625) |
| 0.0 | 1.0 | GO:0016799 | hydrolase activity, hydrolyzing N-glycosyl compounds(GO:0016799) |
| 0.1 | 0.9 | GO:0003999 | adenine phosphoribosyltransferase activity(GO:0003999) |
| 0.3 | 0.8 | GO:0032947 | MAP-kinase scaffold activity(GO:0005078) protein kinase C binding(GO:0005080) protein complex scaffold(GO:0032947) signaling adaptor activity(GO:0035591) |
| 0.0 | 0.8 | GO:0004185 | serine-type carboxypeptidase activity(GO:0004185) |
| 0.1 | 0.7 | GO:0070905 | glycine hydroxymethyltransferase activity(GO:0004372) serine binding(GO:0070905) |
| 0.1 | 0.7 | GO:0004332 | fructose-bisphosphate aldolase activity(GO:0004332) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.2 | PID PLK1 PATHWAY | PLK1 signaling events |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.4 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.1 | 0.3 | REACTOME HDL MEDIATED LIPID TRANSPORT | Genes involved in HDL-mediated lipid transport |