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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT5G62380
Z-value: 0.63
Transcription factors associated with AT5G62380
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G62380
|
AT5G62380 | NAC-domain protein 101 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| NAC101 | arTal_v1_Chr5_+_25050679_25050679 | 0.41 | 1.5e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_+_21240717_21240717 Show fit | 1.02 |
AT5G52310.1
|
low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A) |
|
| arTal_v1_Chr3_-_489467_489467 Show fit | 0.96 |
AT3G02380.1
|
CONSTANS-like 2 |
|
| arTal_v1_Chr3_+_4729399_4729438 Show fit | 0.95 |
AT3G14210.1
AT3G14210.2 |
GDSL-like lipase/acylhydrolase superfamily protein |
|
| arTal_v1_Chr2_+_1993038_1993084 Show fit | 0.88 |
AT2G05440.2
AT2G05440.9 AT2G05440.5 AT2G05440.1 AT2G05440.6 AT2G05440.3 AT2G05440.4 AT2G05440.8 AT2G05440.7 |
GLYCINE RICH PROTEIN 9 |
|
| arTal_v1_Chr3_-_2699257_2699257 Show fit | 0.85 |
AT3G08860.2
|
PYRIMIDINE 4 |
|
| arTal_v1_Chr1_-_22280593_22280593 Show fit | 0.84 |
AT1G60470.1
|
galactinol synthase 4 |
|
| arTal_v1_Chr3_-_2699420_2699420 Show fit | 0.82 |
AT3G08860.1
|
PYRIMIDINE 4 |
|
| arTal_v1_Chr5_-_5692920_5692992 Show fit | 0.82 |
AT5G17300.2
AT5G17300.1 |
Homeodomain-like superfamily protein |
|
| arTal_v1_Chr4_+_10707344_10707378 Show fit | 0.82 |
AT4G19690.2
AT4G19690.1 |
iron-regulated transporter 1 |
|
| arTal_v1_Chr5_+_17526660_17526729 Show fit | 0.81 |
AT5G43630.2
AT5G43630.1 AT5G43630.3 AT5G43630.4 |
zinc knuckle (CCHC-type) family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G62380
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 3.8 | GO:0045036 | protein targeting to chloroplast(GO:0045036) establishment of protein localization to chloroplast(GO:0072596) |
| 0.1 | 2.5 | GO:0019759 | S-glycoside catabolic process(GO:0016145) glycosinolate catabolic process(GO:0019759) glucosinolate catabolic process(GO:0019762) |
| 0.0 | 2.4 | GO:0006972 | hyperosmotic response(GO:0006972) |
| 0.0 | 2.2 | GO:0048511 | circadian rhythm(GO:0007623) rhythmic process(GO:0048511) |
| 0.2 | 2.1 | GO:2000071 | regulation of defense response by callose deposition(GO:2000071) |
| 0.0 | 2.1 | GO:0015995 | chlorophyll biosynthetic process(GO:0015995) |
| 0.1 | 2.0 | GO:0043562 | cellular response to nitrogen levels(GO:0043562) |
| 0.0 | 1.9 | GO:0009407 | toxin catabolic process(GO:0009407) secondary metabolite catabolic process(GO:0090487) |
| 0.0 | 1.9 | GO:0034605 | cellular response to heat(GO:0034605) |
| 0.3 | 1.5 | GO:0031022 | nuclear migration along microfilament(GO:0031022) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 37.4 | GO:0005829 | cytosol(GO:0005829) |
| 0.0 | 13.5 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 0.0 | 7.9 | GO:0055035 | plastid thylakoid membrane(GO:0055035) |
| 0.0 | 5.6 | GO:0030054 | cell-cell junction(GO:0005911) plasmodesma(GO:0009506) cell junction(GO:0030054) symplast(GO:0055044) |
| 0.0 | 5.4 | GO:0005840 | ribosome(GO:0005840) |
| 0.0 | 3.9 | GO:0005730 | nucleolus(GO:0005730) |
| 0.0 | 3.8 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
| 0.1 | 3.4 | GO:0031977 | thylakoid lumen(GO:0031977) |
| 0.0 | 3.1 | GO:0033646 | host(GO:0018995) host cell part(GO:0033643) host intracellular part(GO:0033646) host intracellular organelle(GO:0033647) host intracellular membrane-bounded organelle(GO:0033648) host cell nucleus(GO:0042025) intracellular region of host(GO:0043656) host cell(GO:0043657) other organism(GO:0044215) other organism cell(GO:0044216) other organism part(GO:0044217) |
| 0.0 | 2.4 | GO:0080008 | Cul4-RING E3 ubiquitin ligase complex(GO:0080008) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 6.5 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.1 | 5.6 | GO:0050135 | NAD(P)+ nucleosidase activity(GO:0050135) |
| 0.0 | 3.8 | GO:0043531 | ADP binding(GO:0043531) |
| 0.1 | 3.7 | GO:0102483 | scopolin beta-glucosidase activity(GO:0102483) |
| 0.0 | 2.8 | GO:0051082 | unfolded protein binding(GO:0051082) |
| 0.0 | 2.5 | GO:0042393 | histone binding(GO:0042393) |
| 0.0 | 2.4 | GO:0016859 | cis-trans isomerase activity(GO:0016859) |
| 0.0 | 2.4 | GO:0042626 | hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances(GO:0016820) ATPase activity, coupled to transmembrane movement of substances(GO:0042626) ATPase activity, coupled to movement of substances(GO:0043492) |
| 0.2 | 2.0 | GO:0009882 | blue light photoreceptor activity(GO:0009882) |
| 0.0 | 2.0 | GO:0004707 | MAP kinase activity(GO:0004707) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 0.9 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
| 0.1 | 0.9 | NABA CORE MATRISOME | Ensemble of genes encoding core extracellular matrix including ECM glycoproteins, collagens and proteoglycans |
| 0.2 | 0.7 | PID HIF2PATHWAY | HIF-2-alpha transcription factor network |
| 0.1 | 0.7 | PID IL2 PI3K PATHWAY | IL2 signaling events mediated by PI3K |
| 0.2 | 0.5 | SIG CHEMOTAXIS | Genes related to chemotaxis |
| 0.1 | 0.4 | PID S1P S1P1 PATHWAY | S1P1 pathway |
| 0.1 | 0.4 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.1 | 0.3 | PID BCR 5PATHWAY | BCR signaling pathway |
| 0.1 | 0.3 | PID DELTA NP63 PATHWAY | Validated transcriptional targets of deltaNp63 isoforms |
| 0.1 | 0.3 | PID IL4 2PATHWAY | IL4-mediated signaling events |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.5 | REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT | Genes involved in ABC-family proteins mediated transport |
| 0.3 | 1.4 | REACTOME RECYCLING OF BILE ACIDS AND SALTS | Genes involved in Recycling of bile acids and salts |
| 0.2 | 0.9 | REACTOME BMAL1 CLOCK NPAS2 ACTIVATES CIRCADIAN EXPRESSION | Genes involved in BMAL1:CLOCK/NPAS2 Activates Circadian Expression |
| 0.3 | 0.8 | REACTOME ABACAVIR TRANSPORT AND METABOLISM | Genes involved in Abacavir transport and metabolism |
| 0.1 | 0.8 | REACTOME PYRUVATE METABOLISM AND CITRIC ACID TCA CYCLE | Genes involved in Pyruvate metabolism and Citric Acid (TCA) cycle |
| 0.0 | 0.6 | REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX | Genes involved in Formation of the ternary complex, and subsequently, the 43S complex |
| 0.1 | 0.5 | REACTOME NONSENSE MEDIATED DECAY ENHANCED BY THE EXON JUNCTION COMPLEX | Genes involved in Nonsense Mediated Decay Enhanced by the Exon Junction Complex |
| 0.1 | 0.5 | REACTOME RNA POL II PRE TRANSCRIPTION EVENTS | Genes involved in RNA Polymerase II Pre-transcription Events |
| 0.1 | 0.4 | REACTOME MTORC1 MEDIATED SIGNALLING | Genes involved in mTORC1-mediated signalling |
| 0.1 | 0.4 | REACTOME HDL MEDIATED LIPID TRANSPORT | Genes involved in HDL-mediated lipid transport |