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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT5G62020
Z-value: 1.06
Transcription factors associated with AT5G62020
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G62020
|
AT5G62020 | heat shock transcription factor B2A |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| HSFB2A | arTal_v1_Chr5_+_24915807_24915807 | 0.44 | 1.1e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_19265141_19265141 Show fit | 1.66 |
AT3G51910.1
|
heat shock transcription factor A7A |
|
| arTal_v1_Chr2_-_16603059_16603061 Show fit | 1.58 |
AT2G39800.2
AT2G39800.4 AT2G39800.3 |
delta1-pyrroline-5-carboxylate synthase 1 |
|
| arTal_v1_Chr2_+_11135624_11135634 Show fit | 1.50 |
AT2G26150.2
AT2G26150.1 AT2G26150.4 AT2G26150.3 |
heat shock transcription factor A2 |
|
| arTal_v1_Chr2_-_8850111_8850111 Show fit | 1.48 |
AT2G20560.1
|
DNAJ heat shock family protein |
|
| arTal_v1_Chr2_-_16603319_16603319 Show fit | 1.38 |
AT2G39800.1
|
delta1-pyrroline-5-carboxylate synthase 1 |
|
| arTal_v1_Chr5_-_20204595_20204595 Show fit | 1.34 |
AT5G49730.1
AT5G49730.2 |
ferric reduction oxidase 6 |
|
| arTal_v1_Chr1_+_19685747_19685747 Show fit | 1.26 |
AT1G52870.1
|
Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein |
|
| arTal_v1_Chr1_+_19685545_19685545 Show fit | 1.25 |
AT1G52870.2
|
Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein |
|
| arTal_v1_Chr2_-_10702203_10702203 Show fit | 1.24 |
AT2G25140.1
|
casein lytic proteinase B4 |
|
| arTal_v1_Chr1_+_2274926_2274926 Show fit | 1.23 |
AT1G07400.1
|
HSP20-like chaperones superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G62020
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 3.0 | GO:0055129 | L-proline biosynthetic process(GO:0055129) |
| 0.1 | 2.9 | GO:0042026 | protein refolding(GO:0042026) |
| 0.0 | 2.4 | GO:0034605 | cellular response to heat(GO:0034605) |
| 0.2 | 1.9 | GO:0051131 | chaperone-mediated protein complex assembly(GO:0051131) |
| 0.1 | 1.5 | GO:0034620 | cellular response to unfolded protein(GO:0034620) |
| 0.0 | 1.4 | GO:0000413 | protein peptidyl-prolyl isomerization(GO:0000413) |
| 0.0 | 1.3 | GO:0016117 | tetraterpenoid biosynthetic process(GO:0016109) carotenoid biosynthetic process(GO:0016117) |
| 0.2 | 1.2 | GO:0051571 | positive regulation of histone H3-K4 methylation(GO:0051571) |
| 0.0 | 1.2 | GO:0010431 | seed maturation(GO:0010431) |
| 0.2 | 1.1 | GO:0010599 | production of lsiRNA involved in RNA interference(GO:0010599) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 5.0 | GO:0018995 | host(GO:0018995) host cell part(GO:0033643) host intracellular part(GO:0033646) host intracellular organelle(GO:0033647) host intracellular membrane-bounded organelle(GO:0033648) host cell nucleus(GO:0042025) intracellular region of host(GO:0043656) host cell(GO:0043657) other organism(GO:0044215) other organism cell(GO:0044216) other organism part(GO:0044217) |
| 0.1 | 1.4 | GO:0031970 | organelle envelope lumen(GO:0031970) |
| 0.1 | 1.2 | GO:0005677 | chromatin silencing complex(GO:0005677) |
| 0.0 | 1.2 | GO:0080008 | Cul4-RING E3 ubiquitin ligase complex(GO:0080008) |
| 0.0 | 0.9 | GO:0010287 | plastoglobule(GO:0010287) |
| 0.0 | 0.8 | GO:0005875 | microtubule associated complex(GO:0005875) |
| 0.0 | 0.8 | GO:0009706 | chloroplast inner membrane(GO:0009706) |
| 0.1 | 0.7 | GO:0005788 | endoplasmic reticulum lumen(GO:0005788) |
| 0.0 | 0.7 | GO:0005666 | DNA-directed RNA polymerase III complex(GO:0005666) |
| 0.0 | 0.7 | GO:0031978 | chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 4.4 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.7 | 3.0 | GO:0004350 | glutamate 5-kinase activity(GO:0004349) glutamate-5-semialdehyde dehydrogenase activity(GO:0004350) |
| 0.1 | 1.7 | GO:0051787 | misfolded protein binding(GO:0051787) |
| 0.0 | 1.6 | GO:0051082 | unfolded protein binding(GO:0051082) |
| 0.1 | 1.3 | GO:0016723 | ferric-chelate reductase activity(GO:0000293) oxidoreductase activity, oxidizing metal ions, NAD or NADP as acceptor(GO:0016723) |
| 0.3 | 1.1 | GO:0001227 | transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001227) |
| 0.1 | 1.1 | GO:0032296 | ribonuclease III activity(GO:0004525) double-stranded RNA-specific ribonuclease activity(GO:0032296) |
| 0.0 | 1.1 | GO:0043130 | ubiquitin binding(GO:0043130) |
| 0.3 | 1.0 | GO:0016767 | geranylgeranyl-diphosphate geranylgeranyltransferase activity(GO:0016767) |
| 0.0 | 1.0 | GO:0051087 | chaperone binding(GO:0051087) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.1 | PID ARF 3PATHWAY | Arf1 pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.4 | REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT | Genes involved in Lipid digestion, mobilization, and transport |
| 0.0 | 0.1 | REACTOME COPI MEDIATED TRANSPORT | Genes involved in COPI Mediated Transport |