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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT5G61850
Z-value: 2.53
Transcription factors associated with AT5G61850
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G61850
|
AT5G61850 | floral meristem identity control protein LEAFY (LFY) |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| LFY | arTal_v1_Chr5_+_24844248_24844295 | -0.34 | 2.3e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_-_17712290_17712330 Show fit | 6.01 |
AT2G42540.2
AT2G42540.4 AT2G42540.1 AT2G42540.3 |
cold-regulated 15a |
|
| arTal_v1_Chr2_-_17710433_17710433 Show fit | 4.78 |
AT2G42530.1
|
cold regulated 15b |
|
| arTal_v1_Chr5_+_17987591_17987591 Show fit | 3.16 |
AT5G44590.2
AT5G44590.1 |
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
|
| arTal_v1_Chr2_-_16603059_16603061 Show fit | 2.81 |
AT2G39800.2
AT2G39800.4 AT2G39800.3 |
delta1-pyrroline-5-carboxylate synthase 1 |
|
| arTal_v1_Chr4_-_9607402_9607402 Show fit | 2.54 |
AT4G17090.1
|
chloroplast beta-amylase |
|
| arTal_v1_Chr1_+_3019639_3019639 Show fit | 2.51 |
AT1G09350.1
|
galactinol synthase 3 |
|
| arTal_v1_Chr2_-_17202848_17202848 Show fit | 2.34 |
AT2G41250.1
|
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein |
|
| arTal_v1_Chr1_-_18238497_18238497 Show fit | 2.33 |
AT1G49310.1
|
transmembrane protein |
|
| arTal_v1_Chr2_-_16603319_16603319 Show fit | 2.32 |
AT2G39800.1
|
delta1-pyrroline-5-carboxylate synthase 1 |
|
| arTal_v1_Chr1_+_18132545_18132545 Show fit | 2.29 |
AT1G49010.1
|
Duplicated homeodomain-like superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G61850
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 17.1 | GO:0046777 | protein autophosphorylation(GO:0046777) |
| 1.5 | 8.8 | GO:0055129 | L-proline biosynthetic process(GO:0055129) |
| 0.3 | 8.5 | GO:0071483 | cellular response to blue light(GO:0071483) |
| 0.1 | 6.1 | GO:0009631 | cold acclimation(GO:0009631) |
| 0.7 | 6.0 | GO:0009819 | drought recovery(GO:0009819) |
| 0.2 | 4.9 | GO:0006012 | galactose metabolic process(GO:0006012) |
| 0.9 | 4.3 | GO:0034766 | negative regulation of anion channel activity(GO:0010360) regulation of anion channel activity by blue light(GO:0010361) negative regulation of anion channel activity by blue light(GO:0010362) negative regulation of transporter activity(GO:0032410) negative regulation of ion transmembrane transporter activity(GO:0032413) negative regulation of transmembrane transport(GO:0034763) negative regulation of ion transmembrane transport(GO:0034766) negative regulation of anion transport(GO:1903792) negative regulation of anion transmembrane transport(GO:1903960) |
| 0.1 | 4.1 | GO:0010025 | wax biosynthetic process(GO:0010025) |
| 0.4 | 3.8 | GO:0050879 | circumnutation(GO:0010031) multicellular organismal movement(GO:0050879) |
| 0.1 | 3.8 | GO:0090421 | embryonic meristem initiation(GO:0090421) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 59.0 | GO:0005829 | cytosol(GO:0005829) |
| 0.0 | 31.6 | GO:0009507 | chloroplast(GO:0009507) |
| 0.0 | 20.7 | GO:0044434 | chloroplast part(GO:0044434) |
| 0.0 | 11.2 | GO:0005783 | endoplasmic reticulum(GO:0005783) |
| 0.3 | 5.6 | GO:0009898 | cytoplasmic side of plasma membrane(GO:0009898) |
| 0.1 | 4.4 | GO:0010287 | plastoglobule(GO:0010287) |
| 0.1 | 4.4 | GO:0005635 | nuclear envelope(GO:0005635) |
| 0.0 | 3.6 | GO:0000325 | plant-type vacuole(GO:0000325) |
| 0.7 | 3.4 | GO:0010007 | magnesium chelatase complex(GO:0010007) |
| 0.1 | 3.2 | GO:0009574 | preprophase band(GO:0009574) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 33.7 | GO:0003700 | nucleic acid binding transcription factor activity(GO:0001071) transcription factor activity, sequence-specific DNA binding(GO:0003700) |
| 0.4 | 11.4 | GO:0048029 | monosaccharide binding(GO:0048029) |
| 0.0 | 11.3 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
| 2.2 | 8.8 | GO:0004350 | glutamate 5-kinase activity(GO:0004349) glutamate-5-semialdehyde dehydrogenase activity(GO:0004350) |
| 0.0 | 6.9 | GO:0020037 | heme binding(GO:0020037) |
| 0.0 | 6.8 | GO:0008017 | microtubule binding(GO:0008017) |
| 0.4 | 6.3 | GO:0016157 | sucrose synthase activity(GO:0016157) |
| 0.0 | 5.0 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.1 | 4.9 | GO:0016881 | acid-amino acid ligase activity(GO:0016881) |
| 0.5 | 4.8 | GO:0047216 | inositol 3-alpha-galactosyltransferase activity(GO:0047216) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.5 | PID E2F PATHWAY | E2F transcription factor network |
| 0.3 | 0.8 | PID IL8 CXCR1 PATHWAY | IL8- and CXCR1-mediated signaling events |
| 0.1 | 0.8 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.2 | 0.6 | SA CASPASE CASCADE | Apoptosis is mediated by caspases, cysteine proteases arranged in a proteolytic cascade. |
| 0.0 | 0.2 | SIG INSULIN RECEPTOR PATHWAY IN CARDIAC MYOCYTES | Genes related to the insulin receptor pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.4 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
| 0.1 | 1.1 | REACTOME HOST INTERACTIONS OF HIV FACTORS | Genes involved in Host Interactions of HIV factors |
| 0.3 | 0.9 | REACTOME MRNA DECAY BY 5 TO 3 EXORIBONUCLEASE | Genes involved in mRNA Decay by 5' to 3' Exoribonuclease |
| 0.1 | 0.9 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
| 0.3 | 0.8 | REACTOME SPRY REGULATION OF FGF SIGNALING | Genes involved in Spry regulation of FGF signaling |
| 0.1 | 0.8 | REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT | Genes involved in Lipid digestion, mobilization, and transport |
| 0.1 | 0.8 | REACTOME INTERFERON SIGNALING | Genes involved in Interferon Signaling |
| 0.2 | 0.7 | REACTOME PRE NOTCH EXPRESSION AND PROCESSING | Genes involved in Pre-NOTCH Expression and Processing |
| 0.2 | 0.6 | REACTOME SIGNALING BY TGF BETA RECEPTOR COMPLEX | Genes involved in Signaling by TGF-beta Receptor Complex |
| 0.2 | 0.6 | REACTOME GLUCOSE TRANSPORT | Genes involved in Glucose transport |