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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT5G61620
Z-value: 1.03
Transcription factors associated with AT5G61620
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G61620
|
AT5G61620 | myb-like transcription factor family protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT5G61620 | arTal_v1_Chr5_+_24772326_24772326 | -0.10 | 7.2e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_-_13016235_13016235 Show fit | 1.00 |
AT4G25470.1
|
C-repeat/DRE binding factor 2 |
|
| arTal_v1_Chr2_+_538250_538250 Show fit | 0.94 |
AT2G02120.1
|
Scorpion toxin-like knottin superfamily protein |
|
| arTal_v1_Chr1_+_18546086_18546165 Show fit | 0.79 |
AT1G50050.2
AT1G50050.1 |
CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein |
|
| arTal_v1_Chr5_+_20151163_20151163 Show fit | 0.73 |
AT5G49640.1
|
hypothetical protein |
|
| arTal_v1_Chr5_-_17199793_17199910 Show fit | 0.72 |
AT5G42900.1
AT5G42900.3 AT5G42900.2 |
cold regulated protein 27 |
|
| arTal_v1_Chr3_-_82182_82182 Show fit | 0.67 |
AT3G01260.1
|
Galactose mutarotase-like superfamily protein |
|
| arTal_v1_Chr4_+_18413775_18413775 Show fit | 0.64 |
AT4G39675.1
|
hypothetical protein |
|
| arTal_v1_Chr5_+_15588623_15588723 Show fit | 0.64 |
AT5G38940.2
AT5G38940.1 |
RmlC-like cupins superfamily protein |
|
| arTal_v1_Chr1_-_3481041_3481041 Show fit | 0.62 |
AT1G10550.1
|
xyloglucan:xyloglucosyl transferase 33 |
|
| arTal_v1_Chr1_-_28897120_28897120 Show fit | 0.62 |
AT1G76930.2
|
extensin 4 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G61620
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 2.8 | GO:0071368 | cellular response to cytokinin stimulus(GO:0071368) |
| 0.0 | 2.1 | GO:0009631 | cold acclimation(GO:0009631) |
| 0.0 | 1.4 | GO:0048235 | pollen sperm cell differentiation(GO:0048235) |
| 0.0 | 1.4 | GO:0031146 | SCF-dependent proteasomal ubiquitin-dependent protein catabolic process(GO:0031146) |
| 0.0 | 1.4 | GO:0009739 | response to gibberellin(GO:0009739) |
| 0.0 | 1.3 | GO:0009664 | plant-type cell wall organization(GO:0009664) |
| 0.0 | 1.2 | GO:0045168 | cell-cell signaling involved in cell fate commitment(GO:0045168) |
| 0.2 | 1.1 | GO:0072708 | response to sorbitol(GO:0072708) |
| 0.1 | 1.0 | GO:1902074 | response to salt(GO:1902074) |
| 0.1 | 0.9 | GO:0009750 | response to fructose(GO:0009750) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 1.8 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
| 0.0 | 0.9 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
| 0.0 | 0.7 | GO:0031350 | intrinsic component of plastid membrane(GO:0031350) integral component of plastid membrane(GO:0031351) |
| 0.1 | 0.6 | GO:0000214 | tRNA-intron endonuclease complex(GO:0000214) |
| 0.1 | 0.5 | GO:0070505 | pollen coat(GO:0070505) |
| 0.1 | 0.5 | GO:0017119 | Golgi transport complex(GO:0017119) |
| 0.0 | 0.5 | GO:0030173 | integral component of Golgi membrane(GO:0030173) intrinsic component of Golgi membrane(GO:0031228) |
| 0.1 | 0.4 | GO:0030062 | mitochondrial alpha-ketoglutarate dehydrogenase complex(GO:0005947) mitochondrial tricarboxylic acid cycle enzyme complex(GO:0030062) |
| 0.1 | 0.4 | GO:0005968 | Rab-protein geranylgeranyltransferase complex(GO:0005968) |
| 0.0 | 0.4 | GO:0005669 | transcription factor TFIID complex(GO:0005669) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 2.6 | GO:0000156 | phosphorelay response regulator activity(GO:0000156) |
| 0.0 | 1.9 | GO:0045735 | nutrient reservoir activity(GO:0045735) |
| 0.1 | 1.8 | GO:0005199 | structural constituent of cell wall(GO:0005199) |
| 0.0 | 1.5 | GO:0015171 | amino acid transmembrane transporter activity(GO:0015171) |
| 0.1 | 1.1 | GO:0016157 | sucrose synthase activity(GO:0016157) |
| 0.1 | 0.9 | GO:0047274 | galactinol-sucrose galactosyltransferase activity(GO:0047274) |
| 0.0 | 0.9 | GO:0005227 | calcium activated cation channel activity(GO:0005227) ion gated channel activity(GO:0022839) |
| 0.0 | 0.9 | GO:0047262 | polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262) |
| 0.0 | 0.9 | GO:0001228 | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001228) |
| 0.3 | 0.8 | GO:0015099 | cobalt ion transmembrane transporter activity(GO:0015087) nickel cation transmembrane transporter activity(GO:0015099) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.7 | PID CXCR4 PATHWAY | CXCR4-mediated signaling events |
| 0.1 | 0.3 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.1 | 0.2 | PID INTEGRIN A9B1 PATHWAY | Alpha9 beta1 integrin signaling events |
| 0.0 | 0.1 | PID MYC REPRESS PATHWAY | Validated targets of C-MYC transcriptional repression |
| 0.0 | 0.1 | PID INTEGRIN3 PATHWAY | Beta3 integrin cell surface interactions |
| 0.0 | 0.1 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
| 0.0 | 0.1 | PID FANCONI PATHWAY | Fanconi anemia pathway |
| 0.0 | 0.1 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.0 | 0.0 | PID PI3KCI PATHWAY | Class I PI3K signaling events |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 0.5 | REACTOME GLYCOSPHINGOLIPID METABOLISM | Genes involved in Glycosphingolipid metabolism |
| 0.1 | 0.5 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
| 0.0 | 0.4 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.1 | 0.3 | REACTOME REGULATION OF INSULIN SECRETION | Genes involved in Regulation of Insulin Secretion |
| 0.1 | 0.3 | REACTOME METABOLISM OF NUCLEOTIDES | Genes involved in Metabolism of nucleotides |
| 0.1 | 0.3 | REACTOME G1 S SPECIFIC TRANSCRIPTION | Genes involved in G1/S-Specific Transcription |
| 0.0 | 0.2 | REACTOME GOLGI ASSOCIATED VESICLE BIOGENESIS | Genes involved in Golgi Associated Vesicle Biogenesis |
| 0.0 | 0.2 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.0 | 0.2 | REACTOME PHASE II CONJUGATION | Genes involved in Phase II conjugation |
| 0.0 | 0.2 | REACTOME SIGNALING BY PDGF | Genes involved in Signaling by PDGF |