ISMARA results: AT5G61380

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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT5G61380

Z-value: 0.89

Transcription factors associated with AT5G61380

Gene Symbol	Gene ID	Gene Info
AT5G61380 TAIR	AT5G61380	CCT motif -containing response regulator protein

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
TOC1	arTal_v1_Chr5_+_24674963_24674963	0.79	8.2e-04	Click!

Activity profile of AT5G61380 motif

Sorted Z-values of AT5G61380 motif

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Promoter	Log-likelihood	Transcript	Gene	Gene Info
arTal_v1_Chr2_+_19245591_19245684 Show fit	2.77	AT2G46830.1 AT2G46830.2	CCA1 TAIR Show fit	circadian clock associated 1
arTal_v1_Chr2_+_19246681_19246681 Show fit	2.56	AT2G46830.3	CCA1 TAIR Show fit	circadian clock associated 1
arTal_v1_Chr1_-_37757_37871 Show fit	2.22	AT1G01060.3 AT1G01060.2 AT1G01060.4 AT1G01060.1 AT1G01060.6 AT1G01060.7 AT1G01060.5	LHY TAIR Show fit	Homeodomain-like superfamily protein
arTal_v1_Chr2_+_13381767_13381767 Show fit	2.20	AT2G31380.1	STH TAIR Show fit	salt tolerance homologue
arTal_v1_Chr1_-_156011_156011 Show fit	1.42	AT1G01420.1	UGT72B3 TAIR Show fit	UDP-glucosyl transferase 72B3
arTal_v1_Chr1_-_156178_156178 Show fit	1.38	AT1G01420.2	UGT72B3 TAIR Show fit	UDP-glucosyl transferase 72B3
arTal_v1_Chr4_+_15544800_15544800 Show fit	1.35	AT4G32190.1	AT4G32190 TAIR Show fit	Myosin heavy chain-related protein
arTal_v1_Chr4_-_9779939_9779939 Show fit	1.30	AT4G17550.1	G3Pp4 TAIR Show fit	Major facilitator superfamily protein
arTal_v1_Chr1_-_37230_37230 Show fit	1.16	AT1G01060.8	LHY TAIR Show fit	Homeodomain-like superfamily protein
arTal_v1_Chr5_+_579744_579852 Show fit	1.12	AT5G02580.1 AT5G02580.3 AT5G02580.2	AT5G02580 TAIR Show fit	argininosuccinate lyase

Showing 1 to 10 of 50 entries

Network of associatons between targets according to the STRING database.

First level regulatory network of AT5G61380

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

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Log-likelihood per target	Total log-likelihood	Term	Description
1.5	8.7	GO:0042754	negative regulation of circadian rhythm(GO:0042754)
0.2	2.2	GO:0010100	negative regulation of photomorphogenesis(GO:0010100)
0.0	1.8	GO:0015995	chlorophyll biosynthetic process(GO:0015995)
0.1	1.3	GO:0072506	phosphate ion homeostasis(GO:0055062) trivalent inorganic anion homeostasis(GO:0072506)
0.1	1.3	GO:0009585	phototransduction(GO:0007602) red, far-red light phototransduction(GO:0009585)
0.0	1.1	GO:0009624	response to nematode(GO:0009624)
0.0	0.8	GO:0006506	GPI anchor metabolic process(GO:0006505) GPI anchor biosynthetic process(GO:0006506)
0.2	0.6	GO:0043132	NAD transport(GO:0043132)
0.1	0.6	GO:1901562	response to paraquat(GO:1901562)
0.1	0.5	GO:0010929	positive regulation of auxin mediated signaling pathway(GO:0010929)

Showing 1 to 10 of 13 entries

Gene overrepresentation in cellular component category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.4	1.8	GO:0010007	magnesium chelatase complex(GO:0010007)
0.0	0.8	GO:0031227	intrinsic component of endoplasmic reticulum membrane(GO:0031227)
0.0	0.2	GO:0098827	endoplasmic reticulum tubular network(GO:0071782) endoplasmic reticulum subcompartment(GO:0098827)

Showing 1 to 3 of 3 entries

Gene overrepresentation in molecular function category:

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Log-likelihood per target	Total log-likelihood	Term	Description
1.3	7.5	GO:0019904	protein domain specific binding(GO:0019904)
0.0	2.8	GO:0080043	quercetin 3-O-glucosyltransferase activity(GO:0080043)
0.3	1.8	GO:0051003	magnesium chelatase activity(GO:0016851) ligase activity, forming nitrogen-metal bonds(GO:0051002) ligase activity, forming nitrogen-metal bonds, forming coordination complexes(GO:0051003)
0.1	1.6	GO:0000210	NAD+ diphosphatase activity(GO:0000210)
0.0	0.9	GO:0030145	manganese ion binding(GO:0030145)
0.2	0.6	GO:0052629	phosphatidylinositol-3-phosphatase activity(GO:0004438) phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity(GO:0052629)
0.0	0.6	GO:0051184	cofactor transporter activity(GO:0051184)
0.0	0.5	GO:0016844	strictosidine synthase activity(GO:0016844)
0.0	0.1	GO:0046027	phospholipid:diacylglycerol acyltransferase activity(GO:0046027)
0.0	0.1	GO:0019139	cytokinin dehydrogenase activity(GO:0019139)

Showing 1 to 10 of 10 entries

Gene overrepresentation in curated gene sets: REACTOME pathways category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.6	REACTOME PI METABOLISM	Genes involved in PI Metabolism

Showing 1 to 1 of 1 entries

Results for AT5G61380

Z-value: 0.89

Transcription factors associated with AT5G61380

Activity-expression correlation:

Activity profile of AT5G61380 motif

Sorted Z-values of AT5G61380 motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of AT5G61380

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in cellular component category:

Gene overrepresentation in molecular function category:

Gene overrepresentation in curated gene sets: REACTOME pathways category: