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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT5G61380

Z-value: 0.89

Transcription factors associated with AT5G61380

Gene Symbol Gene ID Gene Info
AT5G61380 CCT motif -containing response regulator protein

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
TOC1arTal_v1_Chr5_+_24674963_246749630.798.2e-04Click!

Activity profile of AT5G61380 motif

Sorted Z-values of AT5G61380 motif

Promoter Log-likelihood Transcript Gene Gene Info
Chr2_+_19245591 2.77 AT2G46830.1
AT2G46830.2
circadian clock associated 1
Chr2_+_19246681 2.56 AT2G46830.3
circadian clock associated 1
Chr1_-_37757 2.22 AT1G01060.3
AT1G01060.2
AT1G01060.4
AT1G01060.1
AT1G01060.6
AT1G01060.7
AT1G01060.5
Homeodomain-like superfamily protein
Chr2_+_13381767 2.20 AT2G31380.1
salt tolerance homologue
Chr1_-_156011 1.42 AT1G01420.1
UDP-glucosyl transferase 72B3
Chr1_-_156178 1.38 AT1G01420.2
UDP-glucosyl transferase 72B3
Chr4_+_15544800 1.35 AT4G32190.1
Myosin heavy chain-related protein
Chr4_-_9779939 1.30 AT4G17550.1
Major facilitator superfamily protein
Chr1_-_37230 1.16 AT1G01060.8
Homeodomain-like superfamily protein
Chr5_+_579744 1.12 AT5G02580.1
AT5G02580.3
AT5G02580.2
argininosuccinate lyase
Chr5_-_25920254 1.11 AT5G64840.1
general control non-repressible 5
Chr1_+_2152798 0.94 AT1G07010.1
AT1G07010.2
AT1G07010.3
Calcineurin-like metallo-phosphoesterase superfamily protein
Chr5_-_4392429 0.88 AT5G13630.1
magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH)
Chr5_-_4392227 0.88 AT5G13630.2
magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH)
Chr1_-_467873 0.85 AT1G02340.2
AT1G02340.1
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr5_-_24953232 0.84 AT5G62130.2
AT5G62130.3
AT5G62130.1
AT5G62130.4
Per1-like family protein
Chr5_-_19312595 0.67 AT5G47650.1
AT5G47650.2
nudix hydrolase homolog 2
Chr2_+_19486842 0.64 AT2G47490.1
NAD+ transporter 1
Chr4_+_13904265 0.64 AT4G27940.1
manganese tracking factor for mitochondrial SOD2
Chr5_-_19312155 0.60 AT5G47650.5
AT5G47650.4
nudix hydrolase homolog 2
Chr5_+_18835605 0.55 AT5G46450.2
AT5G46450.1
AT5G46450.3
Disease resistance protein (TIR-NBS-LRR class) family
Chr4_-_16950620 0.50 AT4G35780.1
ACT-like protein tyrosine kinase family protein
Chr3_-_21100459 0.50 AT3G57020.2
AT3G57020.1
Calcium-dependent phosphotriesterase superfamily protein
Chr4_+_9601348 0.49 AT4G17080.1
Histone H3 K4-specific methyltransferase SET7/9 family protein
Chr5_+_206432 0.43 AT5G01520.2
AT5G01520.1
RING/U-box superfamily protein
Chr5_+_26854022 0.41 AT5G67300.1
myb domain protein r1
Chr4_+_2618372 0.38 AT4G05100.1
myb domain protein 74
Chr5_-_19312747 0.36 AT5G47650.3
nudix hydrolase homolog 2
Chr1_-_5955037 0.33 AT1G17370.2
AT1G17370.1
oligouridylate binding protein 1B
Chr3_+_6840281 0.29 AT3G19680.1
hypothetical protein (DUF1005)
Chr5_-_144863 0.28 AT5G01340.1
Mitochondrial substrate carrier family protein
Chr1_+_11827359 0.27 AT1G32700.1
AT1G32700.2
PLATZ transcription factor family protein
Chr3_+_151725 0.24 AT3G01400.1
ARM repeat superfamily protein
Chr4_-_6840036 0.22 AT4G11220.1
VIRB2-interacting protein 2
Chr1_-_27595142 0.21 AT1G73390.4
AT1G73390.3
AT1G73390.5
AT1G73390.2
Endosomal targeting BRO1-like domain-containing protein
Chr3_-_21830207 0.17 AT3G59060.3
phytochrome interacting factor 3-like 6
Chr3_-_21830507 0.15 AT3G59060.1
AT3G59060.4
phytochrome interacting factor 3-like 6
Chr3_-_18559326 0.14 AT3G50060.1
myb domain protein 77
Chr4_-_18077369 0.13 AT4G38700.1
Disease resistance-responsive (dirigent-like protein) family protein
Chr1_-_27594510 0.12 AT1G73390.1
AT1G73390.7
Endosomal targeting BRO1-like domain-containing protein
Chr2_+_17728479 0.11 AT2G42580.1
tetratricopetide-repeat thioredoxin-like 3
Chr5_+_25921402 0.11 AT5G64850.1
sorbin/SH3 domain protein
Chr5_-_265633 0.11 AT5G01710.1
methyltransferase
Chr1_-_3272110 0.10 AT1G10020.1
formin-like protein (DUF1005)
Chr3_-_21830837 0.10 AT3G59060.2
phytochrome interacting factor 3-like 6
Chr5_+_4392937 0.09 AT5G13640.1
AT5G13640.2
phospholipid:diacylglycerol acyltransferase
Chr3_-_21471694 0.08 AT3G57990.1
hypothetical protein
Chr1_-_28318362 0.07 AT1G75450.1
AT1G75450.2
cytokinin oxidase 5
Chr5_+_4394283 0.05 AT5G13640.3
phospholipid:diacylglycerol acyltransferase
Chr3_+_9867652 0.03 AT3G26810.1
auxin signaling F-box 2

Network of associatons between targets according to the STRING database.

First level regulatory network of AT5G61380

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
1.5 8.7 GO:0042754 negative regulation of circadian rhythm(GO:0042754)
0.2 0.6 GO:0043132 NAD transport(GO:0043132)
0.2 2.2 GO:0010100 negative regulation of photomorphogenesis(GO:0010100)
0.1 0.6 GO:1901562 response to paraquat(GO:1901562)
0.1 0.3 GO:0015742 alpha-ketoglutarate transport(GO:0015742)
0.1 1.3 GO:0072506 phosphate ion homeostasis(GO:0055062) trivalent inorganic anion homeostasis(GO:0072506)
0.1 0.5 GO:0010929 positive regulation of auxin mediated signaling pathway(GO:0010929)
0.1 1.3 GO:0009585 phototransduction(GO:0007602) red, far-red light phototransduction(GO:0009585)
0.0 0.2 GO:0071786 endoplasmic reticulum tubular network organization(GO:0071786)
0.0 0.8 GO:0006506 GPI anchor metabolic process(GO:0006505) GPI anchor biosynthetic process(GO:0006506)
0.0 1.8 GO:0015995 chlorophyll biosynthetic process(GO:0015995)
0.0 1.1 GO:0009624 response to nematode(GO:0009624)
0.0 0.1 GO:0009823 cytokinin catabolic process(GO:0009823) hormone catabolic process(GO:0042447)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 1.8 GO:0010007 magnesium chelatase complex(GO:0010007)
0.0 0.2 GO:0098827 endoplasmic reticulum tubular network(GO:0071782) endoplasmic reticulum subcompartment(GO:0098827)
0.0 0.8 GO:0031227 intrinsic component of endoplasmic reticulum membrane(GO:0031227)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
1.3 7.5 GO:0019904 protein domain specific binding(GO:0019904)
0.3 1.8 GO:0051003 magnesium chelatase activity(GO:0016851) ligase activity, forming nitrogen-metal bonds(GO:0051002) ligase activity, forming nitrogen-metal bonds, forming coordination complexes(GO:0051003)
0.2 0.6 GO:0052629 phosphatidylinositol-3-phosphatase activity(GO:0004438) phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity(GO:0052629)
0.1 1.6 GO:0000210 NAD+ diphosphatase activity(GO:0000210)
0.0 0.1 GO:0046027 phospholipid:diacylglycerol acyltransferase activity(GO:0046027)
0.0 2.8 GO:0080043 quercetin 3-O-glucosyltransferase activity(GO:0080043)
0.0 0.6 GO:0051184 cofactor transporter activity(GO:0051184)
0.0 0.5 GO:0016844 strictosidine synthase activity(GO:0016844)
0.0 0.9 GO:0030145 manganese ion binding(GO:0030145)
0.0 0.1 GO:0019139 cytokinin dehydrogenase activity(GO:0019139)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.6 REACTOME PI METABOLISM Genes involved in PI Metabolism