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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT5G60850
Z-value: 2.04
Transcription factors associated with AT5G60850
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G60850
|
AT5G60850 | OBF binding protein 4 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| OBP4 | arTal_v1_Chr5_+_24480291_24480291 | 0.49 | 7.2e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_+_28975255_28975255 Show fit | 4.81 |
AT1G77120.1
|
alcohol dehydrogenase 1 |
|
| arTal_v1_Chr3_+_4104463_4104463 Show fit | 3.98 |
AT3G12900.1
|
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
|
| arTal_v1_Chr2_+_538250_538250 Show fit | 3.90 |
AT2G02120.1
|
Scorpion toxin-like knottin superfamily protein |
|
| arTal_v1_Chr5_-_14753088_14753088 Show fit | 3.71 |
AT5G37260.1
|
Homeodomain-like superfamily protein |
|
| arTal_v1_Chr4_-_7401951_7401951 Show fit | 3.57 |
AT4G12470.1
|
azelaic acid induced 1 |
|
| arTal_v1_Chr5_+_21240717_21240717 Show fit | 3.50 |
AT5G52310.1
|
low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A) |
|
| arTal_v1_Chr5_+_5206156_5206156 Show fit | 3.48 |
AT5G15950.2
|
Adenosylmethionine decarboxylase family protein |
|
| arTal_v1_Chr5_+_5205869_5205869 Show fit | 3.47 |
AT5G15950.1
|
Adenosylmethionine decarboxylase family protein |
|
| arTal_v1_Chr4_+_10707344_10707378 Show fit | 3.40 |
AT4G19690.2
AT4G19690.1 |
iron-regulated transporter 1 |
|
| arTal_v1_Chr5_-_17199793_17199910 Show fit | 3.37 |
AT5G42900.1
AT5G42900.3 AT5G42900.2 |
cold regulated protein 27 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G60850
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 32.4 | GO:0006468 | protein phosphorylation(GO:0006468) |
| 0.0 | 16.0 | GO:0006412 | translation(GO:0006412) |
| 1.8 | 11.0 | GO:0009413 | response to flooding(GO:0009413) |
| 1.3 | 7.8 | GO:0042754 | negative regulation of circadian rhythm(GO:0042754) |
| 0.1 | 7.5 | GO:0009631 | cold acclimation(GO:0009631) |
| 0.1 | 7.1 | GO:0006101 | tricarboxylic acid cycle(GO:0006099) citrate metabolic process(GO:0006101) |
| 0.1 | 6.7 | GO:0045036 | protein targeting to chloroplast(GO:0045036) establishment of protein localization to chloroplast(GO:0072596) |
| 0.5 | 6.5 | GO:0010100 | negative regulation of photomorphogenesis(GO:0010100) |
| 0.4 | 6.1 | GO:1902074 | response to salt(GO:1902074) |
| 0.2 | 6.0 | GO:2000028 | regulation of photoperiodism, flowering(GO:2000028) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 104.7 | GO:0005886 | plasma membrane(GO:0005886) |
| 0.1 | 57.1 | GO:0005911 | cell-cell junction(GO:0005911) plasmodesma(GO:0009506) cell junction(GO:0030054) symplast(GO:0055044) |
| 0.0 | 39.9 | GO:0005829 | cytosol(GO:0005829) |
| 0.1 | 15.4 | GO:0015935 | small ribosomal subunit(GO:0015935) |
| 0.0 | 13.5 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 0.1 | 13.4 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
| 0.2 | 8.4 | GO:0009707 | chloroplast outer membrane(GO:0009707) |
| 0.1 | 7.5 | GO:0005802 | trans-Golgi network(GO:0005802) |
| 0.1 | 6.8 | GO:0009705 | plant-type vacuole membrane(GO:0009705) |
| 0.1 | 6.5 | GO:0000138 | Golgi trans cisterna(GO:0000138) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 22.9 | GO:0004672 | protein kinase activity(GO:0004672) |
| 0.1 | 19.4 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.0 | 13.9 | GO:0008270 | zinc ion binding(GO:0008270) |
| 0.6 | 9.8 | GO:0016157 | sucrose synthase activity(GO:0016157) |
| 0.2 | 7.8 | GO:0050135 | NAD(P)+ nucleosidase activity(GO:0050135) |
| 0.1 | 6.7 | GO:0003724 | RNA helicase activity(GO:0003724) |
| 0.0 | 5.9 | GO:0015631 | tubulin binding(GO:0015631) |
| 1.0 | 5.7 | GO:0019904 | protein domain specific binding(GO:0019904) |
| 0.2 | 5.6 | GO:0015562 | efflux transmembrane transporter activity(GO:0015562) |
| 0.7 | 5.3 | GO:0004024 | alcohol dehydrogenase activity, zinc-dependent(GO:0004024) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.7 | 2.1 | SIG PIP3 SIGNALING IN CARDIAC MYOCTES | Genes related to PIP3 signaling in cardiac myocytes |
| 0.6 | 1.8 | PID AVB3 OPN PATHWAY | Osteopontin-mediated events |
| 0.4 | 1.3 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
| 0.2 | 1.2 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.4 | 1.1 | ST G ALPHA I PATHWAY | G alpha i Pathway |
| 0.4 | 1.1 | SIG CHEMOTAXIS | Genes related to chemotaxis |
| 0.3 | 1.1 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
| 0.3 | 1.1 | PID IL4 2PATHWAY | IL4-mediated signaling events |
| 0.2 | 0.9 | PID PDGFRA PATHWAY | PDGFR-alpha signaling pathway |
| 0.1 | 0.9 | PID P53 DOWNSTREAM PATHWAY | Direct p53 effectors |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.1 | 4.5 | REACTOME RECRUITMENT OF MITOTIC CENTROSOME PROTEINS AND COMPLEXES | Genes involved in Recruitment of mitotic centrosome proteins and complexes |
| 1.0 | 3.0 | REACTOME GABA SYNTHESIS RELEASE REUPTAKE AND DEGRADATION | Genes involved in GABA synthesis, release, reuptake and degradation |
| 0.6 | 2.5 | REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS | Genes involved in Synthesis of bile acids and bile salts |
| 0.4 | 2.5 | REACTOME SIGNALING BY PDGF | Genes involved in Signaling by PDGF |
| 0.1 | 2.5 | REACTOME NONSENSE MEDIATED DECAY ENHANCED BY THE EXON JUNCTION COMPLEX | Genes involved in Nonsense Mediated Decay Enhanced by the Exon Junction Complex |
| 0.2 | 2.4 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.3 | 2.0 | REACTOME E2F ENABLED INHIBITION OF PRE REPLICATION COMPLEX FORMATION | Genes involved in E2F-enabled inhibition of pre-replication complex formation |
| 0.4 | 1.6 | REACTOME FANCONI ANEMIA PATHWAY | Genes involved in Fanconi Anemia pathway |
| 0.2 | 1.3 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.4 | 1.2 | REACTOME DEADENYLATION OF MRNA | Genes involved in Deadenylation of mRNA |