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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT5G58850
Z-value: 1.51
Transcription factors associated with AT5G58850
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G58850
|
AT5G58850 | myb domain protein 119 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| MYB119 | arTal_v1_Chr5_+_23763945_23763945 | 0.42 | 1.3e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_4408925_4408925 Show fit | 1.62 |
AT3G13520.1
|
arabinogalactan protein 12 |
|
| arTal_v1_Chr5_-_8406132_8406151 Show fit | 1.55 |
AT5G24570.1
AT5G24575.1 |
hypothetical protein hypothetical protein |
|
| arTal_v1_Chr2_+_13674255_13674398 Show fit | 1.51 |
AT2G32190.2
AT2G32190.1 |
cysteine-rich/transmembrane domain A-like protein |
|
| arTal_v1_Chr5_+_3783930_3783930 Show fit | 1.49 |
AT5G11740.1
|
arabinogalactan protein 15 |
|
| arTal_v1_Chr2_-_15014147_15014284 Show fit | 1.45 |
AT2G35710.3
AT2G35710.4 AT2G35710.1 |
Nucleotide-diphospho-sugar transferases superfamily protein |
|
| arTal_v1_Chr4_-_16644928_16644928 Show fit | 1.45 |
AT4G34950.1
|
Major facilitator superfamily protein |
|
| arTal_v1_Chr4_-_12886695_12886740 Show fit | 1.41 |
AT4G25100.1
AT4G25100.3 AT4G25100.4 |
Fe superoxide dismutase 1 |
|
| arTal_v1_Chr4_+_13275200_13275200 Show fit | 1.39 |
AT4G26200.1
|
1-amino-cyclopropane-1-carboxylate synthase 7 |
|
| arTal_v1_Chr2_+_11773187_11773187 Show fit | 1.38 |
AT2G27550.1
|
centroradiali |
|
| arTal_v1_Chr2_-_16780368_16780368 Show fit | 1.36 |
AT2G40170.1
|
Stress induced protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G58850
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 3.3 | GO:0048235 | pollen sperm cell differentiation(GO:0048235) |
| 0.2 | 3.1 | GO:0046341 | CDP-diacylglycerol biosynthetic process(GO:0016024) CDP-diacylglycerol metabolic process(GO:0046341) |
| 0.1 | 3.0 | GO:0009788 | negative regulation of abscisic acid-activated signaling pathway(GO:0009788) |
| 0.0 | 3.0 | GO:0000160 | phosphorelay signal transduction system(GO:0000160) |
| 0.1 | 2.9 | GO:0045489 | pectin biosynthetic process(GO:0045489) |
| 0.1 | 2.7 | GO:0042335 | cuticle development(GO:0042335) |
| 0.1 | 2.4 | GO:0042044 | water transport(GO:0006833) fluid transport(GO:0042044) |
| 0.4 | 2.3 | GO:0006567 | threonine catabolic process(GO:0006567) |
| 0.2 | 2.1 | GO:0000304 | response to singlet oxygen(GO:0000304) |
| 0.1 | 2.0 | GO:0015865 | purine nucleotide transport(GO:0015865) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 36.1 | GO:0005576 | extracellular region(GO:0005576) |
| 0.1 | 26.8 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 2.9 | GO:0005789 | endoplasmic reticulum membrane(GO:0005789) |
| 0.0 | 2.7 | GO:0009705 | plant-type vacuole membrane(GO:0009705) |
| 0.1 | 2.6 | GO:0042644 | chloroplast nucleoid(GO:0042644) |
| 0.0 | 2.6 | GO:0000138 | Golgi trans cisterna(GO:0000138) |
| 0.0 | 2.3 | GO:0022627 | cytosolic small ribosomal subunit(GO:0022627) |
| 0.0 | 2.2 | GO:0005740 | mitochondrial envelope(GO:0005740) |
| 0.1 | 2.0 | GO:0012511 | monolayer-surrounded lipid storage body(GO:0012511) |
| 0.0 | 1.9 | GO:0031227 | intrinsic component of endoplasmic reticulum membrane(GO:0031227) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 5.0 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 0.2 | 3.8 | GO:0005199 | structural constituent of cell wall(GO:0005199) |
| 0.0 | 3.6 | GO:0009055 | electron carrier activity(GO:0009055) |
| 0.1 | 3.5 | GO:0047262 | polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262) |
| 0.1 | 3.0 | GO:0004523 | RNA-DNA hybrid ribonuclease activity(GO:0004523) |
| 0.4 | 2.9 | GO:0090447 | glycerol-3-phosphate 2-O-acyltransferase activity(GO:0090447) |
| 0.1 | 2.9 | GO:0005200 | structural constituent of cytoskeleton(GO:0005200) |
| 0.1 | 2.8 | GO:0004190 | aspartic-type endopeptidase activity(GO:0004190) |
| 0.0 | 2.8 | GO:0042910 | xenobiotic transporter activity(GO:0042910) |
| 0.4 | 2.6 | GO:0045549 | 9-cis-epoxycarotenoid dioxygenase activity(GO:0045549) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 0.7 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.1 | 0.7 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.2 | 0.5 | PID PI3KCI PATHWAY | Class I PI3K signaling events |
| 0.1 | 0.5 | PID CXCR4 PATHWAY | CXCR4-mediated signaling events |
| 0.0 | 0.4 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
| 0.0 | 0.3 | PID IL8 CXCR2 PATHWAY | IL8- and CXCR2-mediated signaling events |
| 0.0 | 0.2 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.0 | 0.2 | PID RAC1 PATHWAY | RAC1 signaling pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 1.2 | REACTOME GLYCOSPHINGOLIPID METABOLISM | Genes involved in Glycosphingolipid metabolism |
| 0.1 | 1.2 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.1 | 0.7 | REACTOME ANTIVIRAL MECHANISM BY IFN STIMULATED GENES | Genes involved in Antiviral mechanism by IFN-stimulated genes |
| 0.2 | 0.6 | REACTOME PREFOLDIN MEDIATED TRANSFER OF SUBSTRATE TO CCT TRIC | Genes involved in Prefoldin mediated transfer of substrate to CCT/TriC |
| 0.1 | 0.5 | REACTOME CITRIC ACID CYCLE TCA CYCLE | Genes involved in Citric acid cycle (TCA cycle) |
| 0.1 | 0.4 | REACTOME REGULATION OF INSULIN SECRETION | Genes involved in Regulation of Insulin Secretion |
| 0.1 | 0.4 | REACTOME PRE NOTCH EXPRESSION AND PROCESSING | Genes involved in Pre-NOTCH Expression and Processing |
| 0.1 | 0.3 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
| 0.1 | 0.3 | REACTOME G ALPHA1213 SIGNALLING EVENTS | Genes involved in G alpha (12/13) signalling events |
| 0.0 | 0.2 | REACTOME MEIOTIC SYNAPSIS | Genes involved in Meiotic Synapsis |