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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT5G54680

Z-value: 0.39

Transcription factors associated with AT5G54680

Gene Symbol Gene ID Gene Info
AT5G54680
AT5G54680 basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
ILR3arTal_v1_Chr5_+_22216934_222169340.371.9e-01Click!

Activity profile of AT5G54680 motif

Sorted Z-values of AT5G54680 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr5_-_5741500 0.43 AT5G17420.1
IRX3
Cellulose synthase family protein
Chr5_+_24167996 0.41 AT5G60020.1
AT5G60020.2
LAC17
laccase 17
Chr4_-_10316886 0.38 AT4G18780.1
IRX1
cellulose synthase family protein
Chr2_-_15589369 0.34 AT2G37090.1
IRX9
Nucleotide-diphospho-sugar transferases superfamily protein
Chr4_-_16063070 0.32 AT4G33330.2
AT4G33330.1
AT4G33330.5
AT4G33330.3
AT4G33330.4
PGSIP3
plant glycogenin-like starch initiation protein 3
Chr2_-_17060652 0.30 AT2G40890.1
CYP98A3
cytochrome P450, family 98, subfamily A, polypeptide 3
Chr5_+_24168245 0.28 AT5G60020.3
LAC17
laccase 17
Chr5_+_5084524 0.27 AT5G15630.1
AT5G15630.2
AT5G15630.3
AT5G15630.4
AT5G15630.5
IRX6
COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
Chr2_-_12996012 0.25 AT2G30490.1
C4H
cinnamate-4-hydroxylase
Chr1_-_9531489 0.21 AT1G27440.1
GUT2
Exostosin family protein
Chr5_+_17714390 0.21 AT5G44030.2
AT5G44030.1
CESA4
cellulose synthase A4
Chr1_-_9510263 0.12 AT1G27380.1
AT1G27380.3
AT1G27380.4
RIC2
ROP-interactive CRIB motif-containing protein 2
Chr5_+_17715687 0.10 AT5G44030.3
CESA4
cellulose synthase A4
Chr3_-_8217080 0.10 AT3G23090.1
AT3G23090.2
AT3G23090.4
AT3G23090.3
AT3G23090
TPX2 (targeting protein for Xklp2) protein family
Chr3_+_6744377 0.10 AT3G19450.1
ATCAD4
GroES-like zinc-binding alcohol dehydrogenase family protein
Chr5_-_24422274 0.08 AT5G60720.1
AT5G60720
electron transporter, putative (Protein of unknown function, DUF547)
Chr5_+_25050679 0.07 AT5G62380.2
NAC101
NAC-domain protein 101
Chr1_+_23337167 0.06 AT1G62990.1
KNAT7
homeobox knotted-like protein
Chr5_+_25050152 0.05 AT5G62380.1
NAC101
NAC-domain protein 101
Chr3_-_8216305 0.05 AT3G23090.5
AT3G23090
TPX2 (targeting protein for Xklp2) protein family
Chr5_-_19838235 0.04 AT5G48930.1
HCT
hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase
Chr3_-_2578276 0.03 AT3G08500.1
MYB83
myb domain protein 83
Chr1_-_9510066 0.02 AT1G27380.2
RIC2
ROP-interactive CRIB motif-containing protein 2

Network of associatons between targets according to the STRING database.

First level regulatory network of AT5G54680

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 GO:0009805 coumarin biosynthetic process(GO:0009805)
0.1 0.4 GO:0010116 positive regulation of abscisic acid biosynthetic process(GO:0010116)
0.1 0.4 GO:0010395 rhamnogalacturonan I metabolic process(GO:0010395)
0.1 0.9 GO:0010413 glucuronoxylan metabolic process(GO:0010413) glucuronoxylan biosynthetic process(GO:0010417)
0.0 0.1 GO:0090058 metaxylem development(GO:0090058)
0.0 0.3 GO:0052324 plant-type cell wall cellulose biosynthetic process(GO:0052324)
0.0 0.3 GO:0006744 ubiquinone metabolic process(GO:0006743) ubiquinone biosynthetic process(GO:0006744)
0.0 0.3 GO:0009833 plant-type primary cell wall biogenesis(GO:0009833)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 GO:0010330 cellulose synthase complex(GO:0010330)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.3 GO:0080116 glucuronoxylan glucuronosyltransferase activity(GO:0080116)
0.1 0.6 GO:0047517 1,4-beta-D-xylan synthase activity(GO:0047517)
0.1 0.3 GO:0046409 p-coumarate 3-hydroxylase activity(GO:0046409)
0.0 1.1 GO:0016760 cellulose synthase (UDP-forming) activity(GO:0016760)
0.0 0.7 GO:0052716 hydroquinone:oxygen oxidoreductase activity(GO:0052716)