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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT5G52830
Z-value: 1.48
Transcription factors associated with AT5G52830
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G52830
|
AT5G52830 | WRKY DNA-binding protein 27 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| WRKY27 | arTal_v1_Chr5_+_21410769_21410769 | 0.41 | 1.5e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_-_14827211_14827211 Show fit | 2.56 |
AT4G30280.1
|
xyloglucan endotransglucosylase/hydrolase 18 |
|
| arTal_v1_Chr4_+_6826587_6826587 Show fit | 2.11 |
AT4G11190.1
|
Disease resistance-responsive (dirigent-like protein) family protein |
|
| arTal_v1_Chr5_+_19428888_19428888 Show fit | 1.97 |
AT5G47980.1
|
HXXXD-type acyl-transferase family protein |
|
| arTal_v1_Chr5_+_21603569_21603569 Show fit | 1.97 |
AT5G53250.1
|
arabinogalactan protein 22 |
|
| arTal_v1_Chr5_-_19036938_19036938 Show fit | 1.86 |
AT5G46890.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr1_-_7396773_7396823 Show fit | 1.78 |
AT1G21120.1
AT1G21120.2 |
O-methyltransferase family protein |
|
| arTal_v1_Chr1_-_4975705_4975705 Show fit | 1.75 |
AT1G14540.1
|
Peroxidase superfamily protein |
|
| arTal_v1_Chr5_+_22075277_22075277 Show fit | 1.74 |
AT5G54370.1
|
Late embryogenesis abundant (LEA) protein-like protein |
|
| arTal_v1_Chr3_-_17008528_17008528 Show fit | 1.73 |
AT3G46280.1
|
kinase-like protein |
|
| arTal_v1_Chr3_+_5187082_5187082 Show fit | 1.70 |
AT3G15357.1
|
phosphopantothenoylcysteine decarboxylase subunit |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G52830
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 8.4 | GO:0010200 | response to chitin(GO:0010200) |
| 0.2 | 4.7 | GO:0042343 | indole glucosinolate metabolic process(GO:0042343) |
| 0.0 | 4.6 | GO:0009753 | response to jasmonic acid(GO:0009753) |
| 0.0 | 3.6 | GO:0080167 | response to karrikin(GO:0080167) |
| 0.6 | 3.0 | GO:1903175 | fatty alcohol biosynthetic process(GO:1903175) |
| 0.1 | 3.0 | GO:0009816 | defense response to bacterium, incompatible interaction(GO:0009816) |
| 0.0 | 3.0 | GO:0006633 | fatty acid biosynthetic process(GO:0006633) |
| 0.1 | 2.3 | GO:0002239 | response to oomycetes(GO:0002239) |
| 0.0 | 2.3 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.1 | 2.2 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 26.2 | GO:0005576 | extracellular region(GO:0005576) |
| 0.0 | 5.5 | GO:0048046 | apoplast(GO:0048046) |
| 0.0 | 5.1 | GO:0005618 | cell wall(GO:0005618) external encapsulating structure(GO:0030312) |
| 0.0 | 4.2 | GO:0009705 | plant-type vacuole membrane(GO:0009705) |
| 0.0 | 4.2 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.0 | 4.2 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.0 | 2.6 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 2.4 | GO:0090406 | pollen tube(GO:0090406) |
| 0.0 | 1.9 | GO:0005615 | extracellular space(GO:0005615) |
| 0.1 | 1.8 | GO:0000145 | exocyst(GO:0000145) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 5.7 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
| 0.0 | 5.2 | GO:0005516 | calmodulin binding(GO:0005516) |
| 0.0 | 4.4 | GO:0004601 | peroxidase activity(GO:0004601) |
| 0.1 | 3.8 | GO:0008171 | O-methyltransferase activity(GO:0008171) |
| 0.2 | 3.7 | GO:0102338 | 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
| 0.6 | 3.0 | GO:0042084 | 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity(GO:0003871) methionine synthase activity(GO:0008705) 5-methyltetrahydrofolate-dependent methyltransferase activity(GO:0042084) 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity(GO:0042085) |
| 0.2 | 2.8 | GO:0047259 | glucomannan 4-beta-mannosyltransferase activity(GO:0047259) |
| 0.3 | 2.6 | GO:0033946 | xyloglucan-specific endo-beta-1,4-glucanase activity(GO:0033946) |
| 0.1 | 2.5 | GO:0005385 | zinc ion transmembrane transporter activity(GO:0005385) |
| 0.1 | 2.4 | GO:0003993 | acid phosphatase activity(GO:0003993) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 0.8 | NABA SECRETED FACTORS | Genes encoding secreted soluble factors |
| 0.1 | 0.4 | PID P73PATHWAY | p73 transcription factor network |
| 0.0 | 0.3 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.0 | 0.2 | PID IL2 PI3K PATHWAY | IL2 signaling events mediated by PI3K |
| 0.0 | 0.1 | PID KIT PATHWAY | Signaling events mediated by Stem cell factor receptor (c-Kit) |
| 0.0 | 0.1 | PID ATM PATHWAY | ATM pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 0.8 | REACTOME PROLACTIN RECEPTOR SIGNALING | Genes involved in Prolactin receptor signaling |
| 0.1 | 0.6 | REACTOME MITOCHONDRIAL PROTEIN IMPORT | Genes involved in Mitochondrial Protein Import |
| 0.1 | 0.5 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.1 | 0.4 | REACTOME GLUTATHIONE CONJUGATION | Genes involved in Glutathione conjugation |
| 0.1 | 0.4 | REACTOME MITOTIC PROMETAPHASE | Genes involved in Mitotic Prometaphase |
| 0.1 | 0.4 | REACTOME INTRINSIC PATHWAY FOR APOPTOSIS | Genes involved in Intrinsic Pathway for Apoptosis |
| 0.1 | 0.3 | REACTOME HDL MEDIATED LIPID TRANSPORT | Genes involved in HDL-mediated lipid transport |
| 0.0 | 0.3 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
| 0.0 | 0.3 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |
| 0.1 | 0.2 | REACTOME PKB MEDIATED EVENTS | Genes involved in PKB-mediated events |