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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT5G52020
Z-value: 0.82
Transcription factors associated with AT5G52020
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G52020
|
AT5G52020 | Integrase-type DNA-binding superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT5G52020 | arTal_v1_Chr5_-_21125065_21125065 | 0.69 | 6.3e-03 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_+_9698940_9698940 Show fit | 1.36 |
AT4G17340.1
|
tonoplast intrinsic protein 2;2 |
|
| arTal_v1_Chr4_+_6832650_6832650 Show fit | 1.30 |
AT4G11210.1
|
Disease resistance-responsive (dirigent-like protein) family protein |
|
| arTal_v1_Chr4_+_6826587_6826587 Show fit | 1.26 |
AT4G11190.1
|
Disease resistance-responsive (dirigent-like protein) family protein |
|
| arTal_v1_Chr5_-_19036938_19036938 Show fit | 1.23 |
AT5G46890.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr5_-_15378416_15378416 Show fit | 1.12 |
AT5G38410.3
AT5G38410.2 |
Ribulose bisphosphate carboxylase (small chain) family protein |
|
| arTal_v1_Chr5_-_15378642_15378642 Show fit | 1.11 |
AT5G38410.1
|
Ribulose bisphosphate carboxylase (small chain) family protein |
|
| arTal_v1_Chr5_-_19040456_19040456 Show fit | 1.09 |
AT5G46900.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr3_-_8589754_8589754 Show fit | 1.06 |
AT3G23810.1
|
S-adenosyl-l-homocysteine (SAH) hydrolase 2 |
|
| arTal_v1_Chr3_-_1758807_1758807 Show fit | 1.05 |
AT3G05890.1
|
Low temperature and salt responsive protein family |
|
| arTal_v1_Chr3_-_197564_197564 Show fit | 1.03 |
AT3G01500.4
|
carbonic anhydrase 1 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G52020
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 4.4 | GO:2000122 | negative regulation of stomatal complex development(GO:2000122) |
| 0.0 | 3.1 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.0 | 3.0 | GO:0010200 | response to chitin(GO:0010200) |
| 0.2 | 2.8 | GO:0016998 | cell wall macromolecule catabolic process(GO:0016998) |
| 0.0 | 2.0 | GO:0009664 | plant-type cell wall organization(GO:0009664) |
| 0.1 | 1.7 | GO:0030388 | fructose 1,6-bisphosphate metabolic process(GO:0030388) |
| 0.0 | 1.7 | GO:0016126 | sterol biosynthetic process(GO:0016126) |
| 0.2 | 1.6 | GO:0010106 | cellular response to iron ion starvation(GO:0010106) |
| 0.1 | 1.6 | GO:0042026 | protein refolding(GO:0042026) |
| 0.0 | 1.5 | GO:0045489 | pectin biosynthetic process(GO:0045489) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 10.0 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.0 | 8.1 | GO:0048046 | apoplast(GO:0048046) |
| 0.1 | 5.3 | GO:0010319 | stromule(GO:0010319) |
| 0.0 | 5.3 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.0 | 4.2 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 4.0 | GO:0000138 | Golgi trans cisterna(GO:0000138) |
| 0.0 | 3.9 | GO:0030312 | cell wall(GO:0005618) external encapsulating structure(GO:0030312) |
| 0.0 | 1.9 | GO:0009705 | plant-type vacuole membrane(GO:0009705) |
| 0.0 | 1.8 | GO:0005615 | extracellular space(GO:0005615) |
| 0.2 | 1.3 | GO:0034388 | Pwp2p-containing subcomplex of 90S preribosome(GO:0034388) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 4.6 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
| 0.1 | 4.1 | GO:0030599 | pectinesterase activity(GO:0030599) |
| 0.0 | 3.8 | GO:0009055 | electron carrier activity(GO:0009055) |
| 0.0 | 2.4 | GO:0004497 | monooxygenase activity(GO:0004497) |
| 0.4 | 2.2 | GO:0016984 | ribulose-bisphosphate carboxylase activity(GO:0016984) |
| 0.1 | 2.2 | GO:0004568 | chitinase activity(GO:0004568) |
| 0.0 | 2.1 | GO:0004190 | aspartic-type endopeptidase activity(GO:0004190) |
| 0.1 | 1.8 | GO:0004332 | fructose-bisphosphate aldolase activity(GO:0004332) |
| 0.1 | 1.8 | GO:0052716 | hydroquinone:oxygen oxidoreductase activity(GO:0052716) |
| 0.1 | 1.7 | GO:0005199 | structural constituent of cell wall(GO:0005199) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 4.3 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.2 | 0.7 | PID IFNG PATHWAY | IFN-gamma pathway |
| 0.1 | 0.3 | ST MYOCYTE AD PATHWAY | Myocyte Adrenergic Pathway is a specific case of the generalized Adrenergic Pathway. |
| 0.1 | 0.2 | PID PI3KCI PATHWAY | Class I PI3K signaling events |
| 0.0 | 0.2 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.0 | 0.2 | PID HDAC CLASSII PATHWAY | Signaling events mediated by HDAC Class II |
| 0.0 | 0.2 | PID RAC1 PATHWAY | RAC1 signaling pathway |
| 0.1 | 0.1 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.0 | 0.1 | PID DELTA NP63 PATHWAY | Validated transcriptional targets of deltaNp63 isoforms |
| 0.0 | 0.1 | PID ERA GENOMIC PATHWAY | Validated nuclear estrogen receptor alpha network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.7 | 4.1 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.2 | 0.7 | REACTOME NOD1 2 SIGNALING PATHWAY | Genes involved in NOD1/2 Signaling Pathway |
| 0.1 | 0.6 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.1 | 0.5 | REACTOME G1 S SPECIFIC TRANSCRIPTION | Genes involved in G1/S-Specific Transcription |
| 0.1 | 0.4 | REACTOME MITOCHONDRIAL PROTEIN IMPORT | Genes involved in Mitochondrial Protein Import |
| 0.1 | 0.4 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.0 | 0.2 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |
| 0.0 | 0.1 | REACTOME GAB1 SIGNALOSOME | Genes involved in GAB1 signalosome |
| 0.0 | 0.1 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
| 0.0 | 0.1 | REACTOME VEGF LIGAND RECEPTOR INTERACTIONS | Genes involved in VEGF ligand-receptor interactions |