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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT5G50670
Z-value: 0.76
Transcription factors associated with AT5G50670
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G50670
|
AT5G50670 | Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| SPL13B | arTal_v1_Chr5_-_20617538_20617538 | 0.28 | 3.2e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_-_26519242_26519242 Show fit | 0.97 |
AT5G66400.2
|
Dehydrin family protein |
|
| arTal_v1_Chr5_-_26519447_26519447 Show fit | 0.88 |
AT5G66400.1
|
Dehydrin family protein |
|
| arTal_v1_Chr1_+_29178705_29178705 Show fit | 0.75 |
AT1G77640.1
|
Integrase-type DNA-binding superfamily protein |
|
| arTal_v1_Chr3_+_8918267_8918267 Show fit | 0.66 |
AT3G24500.1
|
multiprotein bridging factor 1C |
|
| arTal_v1_Chr1_-_18430497_18430497 Show fit | 0.64 |
AT1G49780.1
|
plant U-box 26 |
|
| arTal_v1_Chr3_+_8918679_8918679 Show fit | 0.63 |
AT3G24500.2
|
multiprotein bridging factor 1C |
|
| arTal_v1_Chr1_+_26654768_26654768 Show fit | 0.60 |
AT1G70700.3
AT1G70700.2 |
TIFY domain/Divergent CCT motif family protein |
|
| arTal_v1_Chr1_+_5274271_5274271 Show fit | 0.56 |
AT1G15330.1
|
Cystathionine beta-synthase (CBS) protein |
|
| arTal_v1_Chr1_+_26654529_26654529 Show fit | 0.55 |
AT1G70700.1
|
TIFY domain/Divergent CCT motif family protein |
|
| arTal_v1_Chr4_+_15819489_15819489 Show fit | 0.52 |
AT4G32800.1
|
Integrase-type DNA-binding superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G50670
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.8 | GO:0009961 | response to 1-aminocyclopropane-1-carboxylic acid(GO:0009961) |
| 0.0 | 1.1 | GO:2000022 | regulation of jasmonic acid mediated signaling pathway(GO:2000022) |
| 0.0 | 1.1 | GO:0009873 | ethylene-activated signaling pathway(GO:0009873) |
| 0.1 | 0.9 | GO:0010077 | maintenance of inflorescence meristem identity(GO:0010077) |
| 0.0 | 0.9 | GO:2000012 | regulation of auxin polar transport(GO:2000012) |
| 0.2 | 0.8 | GO:0042149 | cellular response to glucose starvation(GO:0042149) |
| 0.1 | 0.7 | GO:0051571 | positive regulation of histone H3-K4 methylation(GO:0051571) |
| 0.1 | 0.7 | GO:0009745 | sucrose mediated signaling(GO:0009745) |
| 0.1 | 0.7 | GO:0010120 | camalexin biosynthetic process(GO:0010120) camalexin metabolic process(GO:0052317) |
| 0.0 | 0.6 | GO:0009051 | pentose-phosphate shunt, oxidative branch(GO:0009051) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.8 | GO:0031588 | nucleotide-activated protein kinase complex(GO:0031588) |
| 0.1 | 0.7 | GO:0005677 | chromatin silencing complex(GO:0005677) |
| 0.0 | 0.6 | GO:0005811 | lipid particle(GO:0005811) |
| 0.1 | 0.4 | GO:0001673 | male germ cell nucleus(GO:0001673) |
| 0.0 | 0.4 | GO:0048500 | signal recognition particle(GO:0048500) |
| 0.0 | 0.4 | GO:0072686 | mitotic spindle(GO:0072686) |
| 0.0 | 0.2 | GO:0046695 | SLIK (SAGA-like) complex(GO:0046695) |
| 0.0 | 0.2 | GO:0009508 | plastid chromosome(GO:0009508) |
| 0.0 | 0.2 | GO:0042644 | chloroplast nucleoid(GO:0042644) |
| 0.0 | 0.1 | GO:0005674 | transcription factor TFIIF complex(GO:0005674) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 1.3 | GO:0003713 | transcription coactivator activity(GO:0003713) |
| 0.1 | 0.9 | GO:0008195 | phosphatidate phosphatase activity(GO:0008195) |
| 0.2 | 0.8 | GO:0004679 | AMP-activated protein kinase activity(GO:0004679) |
| 0.2 | 0.7 | GO:0052578 | alpha-farnesene synthase activity(GO:0052578) |
| 0.1 | 0.6 | GO:0017057 | 6-phosphogluconolactonase activity(GO:0017057) |
| 0.0 | 0.6 | GO:0000250 | lanosterol synthase activity(GO:0000250) oxidosqualene cyclase activity(GO:0031559) |
| 0.2 | 0.5 | GO:0052692 | alpha-galactosidase activity(GO:0004557) raffinose alpha-galactosidase activity(GO:0052692) |
| 0.0 | 0.5 | GO:0016723 | ferric-chelate reductase activity(GO:0000293) oxidoreductase activity, oxidizing metal ions, NAD or NADP as acceptor(GO:0016723) |
| 0.0 | 0.5 | GO:0004022 | alcohol dehydrogenase (NAD) activity(GO:0004022) |
| 0.0 | 0.5 | GO:0004402 | histone acetyltransferase activity(GO:0004402) peptide-lysine-N-acetyltransferase activity(GO:0061733) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.2 | PID TELOMERASE PATHWAY | Regulation of Telomerase |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.3 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |
| 0.0 | 0.1 | REACTOME G2 M DNA DAMAGE CHECKPOINT | Genes involved in G2/M DNA damage checkpoint |
| 0.0 | 0.1 | REACTOME NUCLEAR SIGNALING BY ERBB4 | Genes involved in Nuclear signaling by ERBB4 |
| 0.0 | 0.1 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |