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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT5G47370
Z-value: 1.39
Transcription factors associated with AT5G47370
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G47370
|
AT5G47370 | Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| HAT2 | arTal_v1_Chr5_-_19218007_19218007 | -0.27 | 3.4e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_+_28053030_28053030 Show fit | 1.79 |
AT1G74670.1
|
Gibberellin-regulated family protein |
|
| arTal_v1_Chr5_+_7664871_7664871 Show fit | 1.77 |
AT5G22920.2
AT5G22920.1 |
CHY-type/CTCHY-type/RING-type Zinc finger protein |
|
| arTal_v1_Chr5_+_19183523_19183571 Show fit | 1.73 |
AT5G47240.2
AT5G47240.1 |
nudix hydrolase homolog 8 |
|
| arTal_v1_Chr5_+_19434758_19434758 Show fit | 1.55 |
AT5G47990.1
|
cytochrome P450, family 705, subfamily A, polypeptide 5 |
|
| arTal_v1_Chr5_-_8175431_8175525 Show fit | 1.52 |
AT5G24150.2
AT5G24150.1 |
FAD/NAD(P)-binding oxidoreductase family protein |
|
| arTal_v1_Chr1_-_23137254_23137254 Show fit | 1.48 |
AT1G62510.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr5_-_8181107_8181107 Show fit | 1.47 |
AT5G24155.2
AT5G24155.3 AT5G24155.1 |
FAD/NAD(P)-binding oxidoreductase family protein |
|
| arTal_v1_Chr3_-_12451556_12451556 Show fit | 1.45 |
AT3G30775.2
AT3G30775.1 |
Methylenetetrahydrofolate reductase family protein |
|
| arTal_v1_Chr1_-_2747936_2747967 Show fit | 1.44 |
AT1G08630.6
AT1G08630.7 AT1G08630.5 AT1G08630.2 |
threonine aldolase 1 |
|
| arTal_v1_Chr5_-_8502224_8502224 Show fit | 1.43 |
AT5G24770.1
AT5G24770.2 |
vegetative storage protein 2 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G47370
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 7.2 | GO:0016126 | sterol biosynthetic process(GO:0016126) |
| 0.1 | 6.1 | GO:0010200 | response to chitin(GO:0010200) |
| 0.0 | 5.7 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.1 | 4.0 | GO:0009686 | gibberellin biosynthetic process(GO:0009686) |
| 0.6 | 3.7 | GO:0006567 | threonine catabolic process(GO:0006567) |
| 0.1 | 3.7 | GO:2000022 | regulation of jasmonic acid mediated signaling pathway(GO:2000022) |
| 0.8 | 3.3 | GO:0080003 | thalianol metabolic process(GO:0080003) |
| 0.1 | 3.1 | GO:0009690 | cytokinin metabolic process(GO:0009690) |
| 0.3 | 3.0 | GO:0080144 | amino acid homeostasis(GO:0080144) |
| 0.1 | 2.9 | GO:0009809 | lignin biosynthetic process(GO:0009809) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 2.1 | GO:0010319 | stromule(GO:0010319) |
| 0.1 | 1.7 | GO:0005811 | lipid particle(GO:0005811) |
| 0.1 | 1.5 | GO:0012511 | monolayer-surrounded lipid storage body(GO:0012511) |
| 0.1 | 1.4 | GO:0005880 | nuclear microtubule(GO:0005880) |
| 0.1 | 1.3 | GO:0045252 | oxoglutarate dehydrogenase complex(GO:0045252) |
| 0.0 | 1.3 | GO:0005684 | U2-type spliceosomal complex(GO:0005684) |
| 0.1 | 1.2 | GO:0000322 | storage vacuole(GO:0000322) protein storage vacuole(GO:0000326) |
| 0.2 | 0.9 | GO:0090397 | stigma papilla(GO:0090397) |
| 0.1 | 0.8 | GO:0010598 | NAD(P)H dehydrogenase complex (plastoquinone)(GO:0010598) |
| 0.0 | 0.8 | GO:0090406 | pollen tube(GO:0090406) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.7 | 5.3 | GO:0004506 | squalene monooxygenase activity(GO:0004506) |
| 0.7 | 3.7 | GO:0008732 | threonine aldolase activity(GO:0004793) L-allo-threonine aldolase activity(GO:0008732) |
| 0.2 | 2.6 | GO:0033743 | peptide-methionine (R)-S-oxide reductase activity(GO:0033743) |
| 0.1 | 2.5 | GO:0010333 | terpene synthase activity(GO:0010333) |
| 0.2 | 2.2 | GO:0004096 | catalase activity(GO:0004096) |
| 0.0 | 2.2 | GO:0015144 | carbohydrate transmembrane transporter activity(GO:0015144) |
| 0.1 | 2.1 | GO:0005179 | hormone activity(GO:0005179) |
| 0.6 | 1.9 | GO:0000249 | C-22 sterol desaturase activity(GO:0000249) |
| 0.2 | 1.8 | GO:0033946 | xyloglucan-specific endo-beta-1,4-glucanase activity(GO:0033946) |
| 0.0 | 1.8 | GO:0016709 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen(GO:0016709) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 1.3 | PID AURORA A PATHWAY | Aurora A signaling |
| 0.2 | 1.0 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
| 0.3 | 0.8 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
| 0.1 | 0.4 | PID MYC REPRESS PATHWAY | Validated targets of C-MYC transcriptional repression |
| 0.1 | 0.4 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
| 0.1 | 0.2 | PID ARF 3PATHWAY | Arf1 pathway |
| 0.0 | 0.2 | PID RAC1 PATHWAY | RAC1 signaling pathway |
| 0.0 | 0.1 | PID TCPTP PATHWAY | Signaling events mediated by TCPTP |
| 0.0 | 0.0 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.0 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.2 | 0.8 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.2 | 0.6 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
| 0.1 | 0.4 | REACTOME REGULATION OF HYPOXIA INDUCIBLE FACTOR HIF BY OXYGEN | Genes involved in Regulation of Hypoxia-inducible Factor (HIF) by Oxygen |
| 0.1 | 0.4 | REACTOME GASTRIN CREB SIGNALLING PATHWAY VIA PKC AND MAPK | Genes involved in Gastrin-CREB signalling pathway via PKC and MAPK |
| 0.1 | 0.3 | REACTOME TRANSCRIPTIONAL ACTIVITY OF SMAD2 SMAD3 SMAD4 HETEROTRIMER | Genes involved in Transcriptional activity of SMAD2/SMAD3:SMAD4 heterotrimer |
| 0.1 | 0.2 | REACTOME COPI MEDIATED TRANSPORT | Genes involved in COPI Mediated Transport |
| 0.1 | 0.2 | REACTOME GOLGI ASSOCIATED VESICLE BIOGENESIS | Genes involved in Golgi Associated Vesicle Biogenesis |
| 0.0 | 0.2 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
| 0.0 | 0.2 | REACTOME BIOLOGICAL OXIDATIONS | Genes involved in Biological oxidations |