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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT5G47220
Z-value: 0.77
Transcription factors associated with AT5G47220
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G47220
|
AT5G47220 | ethylene responsive element binding factor 2 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| ERF2 | arTal_v1_Chr5_-_19172956_19172956 | 0.82 | 3.3e-04 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_7906521_7906521 Show fit | 2.03 |
AT3G22370.1
|
alternative oxidase 1A |
|
| arTal_v1_Chr5_+_6833564_6833659 Show fit | 2.00 |
AT5G20250.2
AT5G20250.1 AT5G20250.4 AT5G20250.3 |
Raffinose synthase family protein |
|
| arTal_v1_Chr5_+_20891163_20891163 Show fit | 1.98 |
AT5G51440.1
|
HSP20-like chaperones superfamily protein |
|
| arTal_v1_Chr3_-_18373147_18373147 Show fit | 1.27 |
AT3G49570.1
|
response to low sulfur 3 |
|
| arTal_v1_Chr2_+_10559173_10559173 Show fit | 1.26 |
AT2G24762.1
|
glutamine dumper 4 |
|
| arTal_v1_Chr1_-_4066344_4066344 Show fit | 1.21 |
AT1G12030.1
|
phosphoenolpyruvate carboxylase, putative (DUF506) |
|
| arTal_v1_Chr4_+_9759203_9759203 Show fit | 1.11 |
AT4G17500.1
|
ethylene responsive element binding factor 1 |
|
| arTal_v1_Chr1_+_5204312_5204433 Show fit | 0.95 |
AT1G15125.1
AT1G15125.2 |
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
|
| arTal_v1_Chr1_+_6945695_6945695 Show fit | 0.94 |
AT1G20030.1
|
Pathogenesis-related thaumatin superfamily protein |
|
| arTal_v1_Chr1_-_23137254_23137254 Show fit | 0.91 |
AT1G62510.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G47220
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 2.4 | GO:0080167 | response to karrikin(GO:0080167) |
| 0.2 | 2.0 | GO:0031930 | alternative respiration(GO:0010230) mitochondria-nucleus signaling pathway(GO:0031930) |
| 0.0 | 1.6 | GO:0010200 | response to chitin(GO:0010200) |
| 0.2 | 1.3 | GO:0032890 | amine transport(GO:0015837) regulation of organic acid transport(GO:0032890) regulation of amine transport(GO:0051952) regulation of amino acid transport(GO:0051955) regulation of amino acid export(GO:0080143) |
| 0.0 | 1.1 | GO:0098869 | cellular oxidant detoxification(GO:0098869) |
| 0.0 | 0.9 | GO:0009641 | shade avoidance(GO:0009641) |
| 0.3 | 0.8 | GO:0010501 | RNA secondary structure unwinding(GO:0010501) |
| 0.3 | 0.8 | GO:0033194 | response to hydroperoxide(GO:0033194) |
| 0.2 | 0.8 | GO:0097298 | regulation of nucleus size(GO:0097298) |
| 0.1 | 0.8 | GO:0016444 | somatic cell DNA recombination(GO:0016444) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 3.3 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.3 | 0.8 | GO:0005652 | nuclear lamina(GO:0005652) |
| 0.1 | 0.8 | GO:0031588 | nucleotide-activated protein kinase complex(GO:0031588) |
| 0.0 | 0.7 | GO:0016607 | nuclear speck(GO:0016607) |
| 0.0 | 0.3 | GO:0009538 | photosystem I reaction center(GO:0009538) |
| 0.0 | 0.3 | GO:0010445 | nuclear dicing body(GO:0010445) |
| 0.0 | 0.2 | GO:0032300 | mismatch repair complex(GO:0032300) |
| 0.0 | 0.1 | GO:0000110 | nucleotide-excision repair factor 1 complex(GO:0000110) |
| 0.0 | 0.1 | GO:0009514 | glyoxysome(GO:0009514) |
| 0.0 | 0.1 | GO:0017053 | transcriptional repressor complex(GO:0017053) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 2.0 | GO:0047274 | galactinol-sucrose galactosyltransferase activity(GO:0047274) |
| 0.3 | 2.0 | GO:0009916 | alternative oxidase activity(GO:0009916) |
| 0.0 | 1.1 | GO:0016759 | cellulose synthase activity(GO:0016759) |
| 0.3 | 0.8 | GO:0036381 | pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity(GO:0036381) |
| 0.2 | 0.8 | GO:1901982 | disaccharide binding(GO:0048030) maltose binding(GO:1901982) |
| 0.1 | 0.8 | GO:0004566 | beta-glucuronidase activity(GO:0004566) |
| 0.0 | 0.8 | GO:0001228 | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001228) |
| 0.0 | 0.8 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 0.2 | 0.7 | GO:0050736 | O-malonyltransferase activity(GO:0050736) |
| 0.1 | 0.5 | GO:0004617 | phosphoglycerate dehydrogenase activity(GO:0004617) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 0.8 | PID VEGF VEGFR PATHWAY | VEGF and VEGFR signaling network |
| 0.0 | 0.1 | PID AP1 PATHWAY | AP-1 transcription factor network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 0.8 | REACTOME SEMAPHORIN INTERACTIONS | Genes involved in Semaphorin interactions |
| 0.0 | 0.2 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
| 0.0 | 0.1 | REACTOME FORMATION OF INCISION COMPLEX IN GG NER | Genes involved in Formation of incision complex in GG-NER |
| 0.0 | 0.1 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |