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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT5G47220

Z-value: 0.77

Transcription factors associated with AT5G47220

Gene Symbol Gene ID Gene Info
AT5G47220
AT5G47220 ethylene responsive element binding factor 2

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
ERF2arTal_v1_Chr5_-_19172956_191729560.823.3e-04Click!

Activity profile of AT5G47220 motif

Sorted Z-values of AT5G47220 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr3_+_7906521 2.03 AT3G22370.1
AOX1A
alternative oxidase 1A
Chr5_+_6833564 2.00 AT5G20250.2
AT5G20250.1
AT5G20250.4
AT5G20250.3
DIN10
Raffinose synthase family protein
Chr5_+_20891163 1.98 AT5G51440.1
AT5G51440
HSP20-like chaperones superfamily protein
Chr3_-_18373147 1.27 AT3G49570.1
LSU3
response to low sulfur 3
Chr2_+_10559173 1.26 AT2G24762.1
GDU4
glutamine dumper 4
Chr1_-_4066344 1.21 AT1G12030.1
AT1G12030
phosphoenolpyruvate carboxylase, putative (DUF506)
Chr4_+_9759203 1.11 AT4G17500.1
ERF-1
ethylene responsive element binding factor 1
Chr1_+_5204312 0.95 AT1G15125.1
AT1G15125.2
AT1G15125
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr1_+_6945695 0.94 AT1G20030.1
AT1G20030
Pathogenesis-related thaumatin superfamily protein
Chr1_-_23137254 0.91 AT1G62510.1
AT1G62510
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr1_+_6945425 0.91 AT1G20030.2
AT1G20030
Pathogenesis-related thaumatin superfamily protein
Chr4_-_17044555 0.85 AT4G36020.3
AT4G36020.1
AT4G36020.2
CSDP1
cold shock domain protein 1
Chr2_-_1040184 0.79 AT2G03440.1
NRP1
nodulin-related protein 1
Chr3_+_5187082 0.79 AT3G15357.1
AT3G15357
phosphopantothenoylcysteine decarboxylase subunit
Chr1_-_25445357 0.79 AT1G67860.1
AT1G67860
transmembrane protein
Chr5_-_24987811 0.78 AT5G62210.1
AT5G62210
Embryo-specific protein 3, (ATS3)
Chr1_-_575085 0.77 AT1G02660.1
AT1G02660
alpha/beta-Hydrolases superfamily protein
Chr4_+_11155453 0.77 AT4G20830.1
AT4G20830.2
AT4G20830
FAD-binding Berberine family protein
Chr5_-_173663 0.77 AT5G01410.1
AT5G01410.2
RSR4
Aldolase-type TIM barrel family protein
Chr2_+_3618058 0.76 AT2G08986.1
AT2G08986
hypothetical protein
Chr1_+_15081952 0.74 AT1G40104.1
AT1G40104
hypothetical protein
Chr3_+_11527756 0.71 AT3G29670.1
PMAT2
HXXXD-type acyl-transferase family protein
Chr5_-_834289 0.69 AT5G03380.2
AT5G03380
Heavy metal transport/detoxification superfamily protein
Chr5_+_4756057 0.69 AT5G14730.1
AT5G14730
hypothetical protein
Chr3_-_17008528 0.67 AT3G46280.1
AT3G46280
kinase-like protein
Chr2_+_6797111 0.64 AT2G15580.3
AT2G15580.1
AT2G15580
RING/U-box superfamily protein
Chr3_-_20139149 0.64 AT3G54390.1
AT3G54390.2
AT3G54390
sequence-specific DNA binding transcription factor
Chr5_-_834549 0.64 AT5G03380.1
AT5G03380
Heavy metal transport/detoxification superfamily protein
Chr4_-_15507176 0.63 AT4G32070.2
AT4G32070.1
Phox4
Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein
Chr1_+_20876440 0.63 AT1G55850.1
CSLE1
cellulose synthase like E1
Chr5_-_14123362 0.63 AT5G35970.1
AT5G35970
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr1_-_8310916 0.62 AT1G23390.1
AT1G23390
Kelch repeat-containing F-box family protein
Chr5_-_26906517 0.60 AT5G67420.1
AT5G67420.2
LBD37
LOB domain-containing protein 37
Chr3_-_7213401 0.59 AT3G20640.2
AT3G20640.4
AT3G20640.3
AT3G20640.1
AT3G20640
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr3_+_18634546 0.59 AT3G50260.1
CEJ1
cooperatively regulated by ethylene and jasmonate 1
Chr1_-_25446952 0.58 AT1G67865.1
AT1G67865
hypothetical protein
Chr1_-_9406369 0.58 AT1G27090.1
AT1G27090
glycine-rich protein
Chr2_+_6797335 0.57 AT2G15580.2
AT2G15580
RING/U-box superfamily protein
Chr1_+_29502506 0.55 AT1G78410.1
AT1G78410.2
AT1G78410
VQ motif-containing protein
Chr2_-_11685342 0.53 AT2G27310.1
AT2G27310
F-box family protein
Chr5_+_320349 0.53 AT5G01830.1
SAUR21
ARM repeat superfamily protein
Chr3_-_8064649 0.52 AT3G22800.1
AT3G22800
Leucine-rich repeat (LRR) family protein
Chr1_-_29962305 0.52 AT1G79620.3
AT1G79620.2
AT1G79620.5
AT1G79620.4
AT1G79620.1
AT1G79620
Leucine-rich repeat protein kinase family protein
Chr1_-_26364759 0.52 AT1G70000.2
AT1G70000.1
AT1G70000
myb-like transcription factor family protein
Chr1_+_8401808 0.50 AT1G23760.1
JP630
BURP domain-containing protein
Chr3_+_4525033 0.50 AT3G13780.1
AT3G13780
SMAD/FHA domain-containing protein
Chr4_-_1005253 0.49 AT4G02290.2
AT4G02290.1
GH9B13
glycosyl hydrolase 9B13
Chr5_-_5253790 0.48 AT5G16080.1
CXE17
carboxyesterase 17
Chr1_+_6100964 0.48 AT1G17745.1
AT1G17745.2
PGDH
D-3-phosphoglycerate dehydrogenase
Chr3_+_18255961 0.46 AT3G49240.1
emb1796
Pentatricopeptide repeat (PPR) superfamily protein
Chr1_+_752191 0.46 AT1G03120.1
AT1G03120.2
RAB28
responsive to abscisic acid 28
Chr1_+_1882907 0.46 AT1G06160.1
ORA59
octadecanoid-responsive AP2/ERF 59
Chr1_-_25447622 0.46 AT1G67865.2
AT1G67865
hypothetical protein
Chr1_+_7346156 0.45 AT1G21010.1
AT1G21010
poly polymerase
Chr5_-_8444101 0.45 AT5G24660.1
LSU2
response to low sulfur 2
Chr3_+_20666887 0.44 AT3G55690.1
AT3G55690
hypothetical protein
Chr1_+_29567106 0.43 AT1G78600.2
LZF1
light-regulated zinc finger protein 1
Chr4_-_13769961 0.43 AT4G27585.1
AT4G27585
SPFH/Band 7/PHB domain-containing membrane-associated protein family
Chr1_+_29566863 0.42 AT1G78600.1
LZF1
light-regulated zinc finger protein 1
Chr4_-_7545326 0.42 AT4G12880.2
ENODL19
early nodulin-like protein 19
Chr3_-_15092521 0.42 AT3G43110.1
AT3G43110
transmembrane protein
Chr1_-_12516521 0.40 AT1G34315.1
AT1G34315
transmembrane protein
Chr4_-_16853035 0.40 AT4G35480.1
RHA3B
RING-H2 finger A3B
Chr4_-_7545512 0.40 AT4G12880.1
ENODL19
early nodulin-like protein 19
Chr2_-_9726384 0.40 AT2G22830.1
SQE2
squalene epoxidase 2
Chr5_+_26311587 0.40 AT5G65770.2
AT5G65770.1
LINC4
little nuclei4
Chr1_+_28163344 0.39 AT1G75000.1
AT1G75000
GNS1/SUR4 membrane protein family
Chr5_+_24560501 0.38 AT5G61030.2
GR-RBP3
glycine-rich RNA-binding protein 3
Chr5_-_9486365 0.38 AT5G26960.1
AT5G26960
Galactose oxidase/kelch repeat superfamily protein
Chr3_-_1776840 0.38 AT3G05937.1
AT3G05937
hypothetical protein
Chr1_+_24229063 0.38 AT1G65230.1
AT1G65230
transmembrane protein, putative (DUF2358)
Chr5_+_25191860 0.36 AT5G62720.2
AT5G62720
Integral membrane HPP family protein
Chr1_+_618061 0.36 AT1G02810.1
AT1G02810
Plant invertase/pectin methylesterase inhibitor superfamily
Chr1_-_24807557 0.36 AT1G66480.1
AT1G66480
plastid movement impaired 2
Chr5_-_8412240 0.36 AT5G24580.3
AT5G24580.2
AT5G24580
Heavy metal transport/detoxification superfamily protein
Chr3_-_2329926 0.36 AT3G07310.2
AT3G07310.1
AT3G07310
phosphoserine aminotransferase, putative (DUF760)
Chr5_+_25191402 0.35 AT5G62720.1
AT5G62720
Integral membrane HPP family protein
Chr5_+_26311311 0.35 AT5G65770.3
AT5G65780.2
LINC4
ATBCAT-5
little nuclei4
branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5)
Chr5_+_5084524 0.35 AT5G15630.1
AT5G15630.2
AT5G15630.3
AT5G15630.4
AT5G15630.5
IRX6
COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
Chr5_+_9803647 0.34 AT5G27690.1
AT5G27690
Heavy metal transport/detoxification superfamily protein
Chr5_+_24560309 0.34 AT5G61030.1
GR-RBP3
glycine-rich RNA-binding protein 3
Chr5_-_4734712 0.34 AT5G14690.2
AT5G14690
transmembrane protein
Chr3_+_231610 0.34 AT3G01610.1
AT3G01610.2
CDC48C
cell division cycle 48C
Chr5_+_13419080 0.34 AT5G35170.1
AT5G35170.2
AT5G35170
adenylate kinase family protein
Chr3_-_1855063 0.34 AT3G06130.2
AT3G06130.1
AT3G06130
Heavy metal transport/detoxification superfamily protein
Chr2_-_11777529 0.33 AT2G27580.2
AT2G27580.1
AT2G27580
A20/AN1-like zinc finger family protein
Chr1_-_1437763 0.33 AT1G05020.1
AT1G05020
ENTH/ANTH/VHS superfamily protein
Chr1_+_4028595 0.32 AT1G11930.2
AT1G11930.1
AT1G11930
Putative pyridoxal phosphate-dependent enzyme, YBL036C type
Chr5_+_395567 0.32 AT5G02030.1
RPL
POX (plant homeobox) family protein
Chr5_-_8412453 0.32 AT5G24580.1
AT5G24580.4
AT5G24580
Heavy metal transport/detoxification superfamily protein
Chr5_+_7205477 0.31 AT5G21170.1
AKINBETA1
5'-AMP-activated protein kinase beta-2 subunit protein
Chr5_-_315405 0.31 AT5G01820.1
SR1
serine/threonine protein kinase 1
Chr1_+_11188120 0.31 AT1G31290.2
AT1G31290.3
AT1G31290.1
AGO3
ARGONAUTE 3
Chr4_+_17938372 0.31 AT4G38270.1
AT4G38270.2
GAUT3
galacturonosyltransferase 3
Chr2_+_16295140 0.30 AT2G39020.1
AT2G39020
Acyl-CoA N-acyltransferases (NAT) superfamily protein
Chr1_+_8549191 0.30 AT1G24150.2
AT1G24150.1
FH4
formin homologue 4
Chr4_-_7968925 0.30 AT4G13720.1
AT4G13720.2
AT4G13720
Inosine triphosphate pyrophosphatase family protein
Chr5_-_26749616 0.30 AT5G67010.1
AT5G67010
Integrase-type DNA-binding superfamily protein
Chr1_-_29143050 0.29 AT1G77550.1
AT1G77550
tubulin-tyrosine ligase
Chr2_+_15192480 0.29 AT2G36220.1
AT2G36220
hypothetical protein
Chr5_+_7205667 0.29 AT5G21170.2
AKINBETA1
5'-AMP-activated protein kinase beta-2 subunit protein
Chr3_+_20547661 0.29 AT3G55420.1
AT3G55420
hypothetical protein
Chr5_-_26096114 0.29 AT5G65300.1
AT5G65300
hypothetical protein
Chr4_+_12985661 0.28 AT4G25410.1
AT4G25410
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr1_-_19021808 0.28 AT1G51310.1
AT1G51310
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
Chr3_-_17968590 0.28 AT3G48510.1
AT3G48510
AtIII18x5-like protein
Chr1_+_21159736 0.28 AT1G56500.2
AT1G56500.1
AT1G56500.3
AT1G56500
haloacid dehalogenase-like hydrolase family protein
Chr5_+_25692425 0.27 AT5G64230.1
AT5G64230
1,8-cineole synthase
Chr1_-_23368369 0.27 AT1G63030.2
AT1G63030.1
ddf2
Integrase-type DNA-binding superfamily protein
Chr3_-_18882172 0.27 AT3G50790.2
AT3G50790.1
AT3G50790
esterase/lipase/thioesterase family protein
Chr1_-_754262 0.26 AT1G03130.1
PSAD-2
photosystem I subunit D-2
Chr5_+_3509833 0.26 AT5G11060.1
KNAT4
homeobox protein knotted-1-like 4
Chr1_-_16137463 0.26 AT1G42990.1
BZIP60
basic region/leucine zipper motif 60
Chr1_+_7963813 0.26 AT1G22540.1
AT1G22540
Major facilitator superfamily protein
Chr2_-_17613591 0.25 AT2G42280.2
AT2G42280.3
AT2G42280.1
FBH4
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr3_-_20718866 0.25 AT3G55840.1
AT3G55840
Hs1pro-1 protein
Chr1_+_26626528 0.25 AT1G70620.5
AT1G70620.6
AT1G70620.4
AT1G70620.3
AT1G70620.8
AT1G70620.7
AT1G70620.1
AT1G70620.2
AT1G70620.9
AT1G70620
cyclin-like protein
Chr2_-_591689 0.25 AT2G02230.1
PP2-B1
phloem protein 2-B1
Chr1_-_23019494 0.25 AT1G62300.1
WRKY6
WRKY family transcription factor
Chr5_-_25155983 0.25 AT5G62650.1
AT5G62650
Tic22-like family protein
Chr5_+_6424779 0.25 AT5G19140.3
AILP1
aluminum induced protein with YGL and LRDR motifs
Chr1_-_17973303 0.25 AT1G48610.2
AT1G48610.1
AT1G48610
AT hook motif-containing protein
Chr1_-_23855658 0.24 AT1G64280.1
NPR1
regulatory protein (NPR1)
Chr4_+_7613213 0.24 AT4G13040.1
AT4G13040.4
AT4G13040.5
AT4G13040.2
AT4G13040.6
AT4G13040.7
AT4G13040.8
AT4G13040
Integrase-type DNA-binding superfamily protein
Chr4_+_14418556 0.24 AT4G29240.1
AT4G29240.2
AT4G29240
Leucine-rich repeat (LRR) family protein
Chr4_+_14566183 0.24 AT4G29740.3
AT4G29740.2
AT4G29740.1
CKX4
cytokinin oxidase 4
Chr1_-_24176253 0.24 AT1G65070.1
AT1G65070.4
AT1G65070.2
AT1G65070.3
AT1G65070
DNA mismatch repair protein MutS, type 2
Chr3_-_10587759 0.24 AT3G28330.1
AT3G28330
F-box family protein-like protein
Chr4_-_4805337 0.23 AT4G07960.2
CSLC12
Cellulose-synthase-like C12
Chr4_+_446978 0.23 AT4G01026.1
PYL7
PYR1-like 7
Chr1_+_26258788 0.23 AT1G69780.1
ATHB13
Homeobox-leucine zipper protein family
Chr1_+_21028137 0.23 AT1G56190.1
AT1G56190.2
AT1G56190
Phosphoglycerate kinase family protein
Chr4_-_16282048 0.23 AT4G33970.1
AT4G33970
Leucine-rich repeat (LRR) family protein
Chr1_+_29871326 0.23 AT1G79420.1
AT1G79420
C-type mannose receptor (DUF620)
Chr5_-_1467161 0.23 AT5G04970.1
AT5G04970
Plant invertase/pectin methylesterase inhibitor superfamily
Chr5_-_25764420 0.23 AT5G64430.1
AT5G64430
Octicosapeptide/Phox/Bem1p family protein
Chr4_-_4805647 0.23 AT4G07960.1
CSLC12
Cellulose-synthase-like C12
Chr5_-_13237662 0.22 AT5G34940.4
GUS3
glucuronidase 3
Chr1_-_19649340 0.22 AT1G52750.1
AT1G52750
alpha/beta-Hydrolases superfamily protein
Chr3_+_22248892 0.22 AT3G60200.1
AT3G60200
hypothetical protein
Chr2_-_8706900 0.22 AT2G20180.5
AT2G20180.4
AT2G20180.8
AT2G20180.2
AT2G20180.1
AT2G20180.7
AT2G20180.6
AT2G20180.3
PIL5
phytochrome interacting factor 3-like 5
Chr5_-_1918896 0.22 AT5G06280.3
AT5G06280.1
AT5G06280
hypothetical protein
Chr5_+_6423153 0.22 AT5G19140.2
AT5G19140.1
AILP1
aluminum induced protein with YGL and LRDR motifs
Chr1_-_19690589 0.22 AT1G52880.1
NAM
NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
Chr4_-_2594125 0.22 AT4G05070.1
AT4G05070
Wound-responsive family protein
Chr5_-_10455681 0.22 AT5G28490.1
AT5G28491.1
LSH1
AT5G28491
LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640)
hypothetical protein
Chr5_-_37999 0.21 AT5G01100.1
FRB1
O-fucosyltransferase family protein
Chr2_-_18907973 0.21 AT2G45950.2
AT2G45950.1
AT2G45950.3
SK20
SKP1-like 20
Chr5_-_565883 0.21 AT5G02530.2
AT5G02530.1
AT5G02530
RNA-binding (RRM/RBD/RNP motifs) family protein
Chr1_-_182497 0.21 AT1G01490.4
AT1G01490.3
AT1G01490
Heavy metal transport/detoxification superfamily protein
Chr1_-_182749 0.21 AT1G01490.2
AT1G01490.1
AT1G01490
Heavy metal transport/detoxification superfamily protein
Chr5_-_21688223 0.21 AT5G53440.2
AT5G53440.1
AT5G53440
LOW protein: zinc finger CCCH domain protein
Chr3_-_23218312 0.21 AT3G62760.1
ATGSTF13
Glutathione S-transferase family protein
Chr2_-_18907477 0.21 AT2G45950.4
AT2G45950.5
SK20
SKP1-like 20
Chr5_-_24975632 0.21 AT5G62170.1
AT5G62170.2
AT5G62170.4
AT5G62170.3
TRM25
LOW protein: M-phase inducer phosphatase-like protein
Chr5_-_13238884 0.21 AT5G34940.2
GUS3
glucuronidase 3
Chr3_-_18594715 0.20 AT3G50140.1
AT3G50140.2
AT3G50140
transmembrane protein, putative (DUF247)
Chr5_+_866339 0.20 AT5G03470.1
ATB' ALPHA
Protein phosphatase 2A regulatory B subunit family protein
Chr5_-_8412049 0.20 AT5G24580.5
AT5G24580
Heavy metal transport/detoxification superfamily protein
Chr1_-_1169034 0.20 AT1G04360.1
AT1G04360
RING/U-box superfamily protein
Chr5_-_4986377 0.20 AT5G15350.1
ENODL17
early nodulin-like protein 17
Chr5_-_6730395 0.19 AT5G19900.1
AT5G19900.2
AT5G19900.5
AT5G19900.4
AT5G19900.3
AT5G19900
PRLI-interacting factor
Chr3_+_2563803 0.19 AT3G08030.1
AT3G08030
DNA-directed RNA polymerase subunit beta (Protein of unknown function, DUF642)
Chr3_+_21419449 0.19 AT3G57830.1
AT3G57830.2
AT3G57830.3
AT3G57830
Leucine-rich repeat protein kinase family protein
Chr1_+_28070295 0.19 AT1G74710.1
AT1G74710.2
EDS16
ADC synthase superfamily protein
Chr1_-_28268416 0.19 AT1G75330.1
OTC
ornithine carbamoyltransferase
Chr5_+_7207166 0.19 AT5G21170.3
AKINBETA1
5'-AMP-activated protein kinase beta-2 subunit protein
Chr2_-_9706217 0.19 AT2G22800.1
HAT9
Homeobox-leucine zipper protein family
Chr3_+_2564153 0.19 AT3G08030.2
AT3G08030
DNA-directed RNA polymerase subunit beta (Protein of unknown function, DUF642)
Chr3_-_4262255 0.19 AT3G13225.3
AT3G13225
WW domain-containing protein
Chr5_-_13238457 0.19 AT5G34940.1
GUS3
glucuronidase 3
Chr1_+_28180057 0.19 AT1G75050.1
AT1G75050
Pathogenesis-related thaumatin superfamily protein
Chr5_-_24462541 0.18 AT5G60800.2
AT5G60800.1
AT5G60800
Heavy metal transport/detoxification superfamily protein
Chr5_-_4736645 0.18 AT5G14690.1
AT5G14690
transmembrane protein
Chr5_-_13238718 0.18 AT5G34940.3
GUS3
glucuronidase 3
Chr1_+_24028830 0.18 AT1G64660.1
MGL
methionine gamma-lyase
Chr2_-_7577846 0.18 AT2G17450.1
RHA3A
RING-H2 finger A3A
Chr5_+_21514896 0.18 AT5G53060.1
AT5G53060.3
AT5G53060.2
RCF3
RNA-binding KH domain-containing protein
Chr5_-_2458502 0.17 AT5G07730.1
AT5G07730
transmembrane protein
Chr1_+_27478970 0.17 AT1G73060.1
LPA3
Low PSII Accumulation 3
Chr3_-_4262916 0.17 AT3G13225.2
AT3G13225.1
AT3G13225
WW domain-containing protein
Chr2_-_16038972 0.17 AT2G38280.2
AT2G38280.1
FAC1
AMP deaminase, putative / myoadenylate deaminase
Chr4_+_15106558 0.17 AT4G31010.1
AT4G31010.2
AT4G31010
RNA-binding CRS1 / YhbY (CRM) domain-containing protein
Chr2_-_9460908 0.17 AT2G22250.1
AT2G22250.2
AT2G22250.3
AAT
aspartate aminotransferase
Chr2_-_8850111 0.17 AT2G20560.1
AT2G20560
DNAJ heat shock family protein
Chr1_+_26555705 0.17 AT1G70460.1
PERK13
root hair specific 10
Chr1_+_1749478 0.17 AT1G05820.1
AT1G05820.3
AT1G05820.2
SPPL5
SIGNAL PEPTIDE PEPTIDASE-LIKE 5
Chr5_-_11721564 0.16 AT5G31804.1
AT5G31804

Chr3_+_18578488 0.16 AT3G50100.2
SDN1
small RNA degrading nuclease 1
Chr1_+_23727794 0.16 AT1G63930.1
ROH1
from the Czech 'roh' meaning 'corner'
Chr3_+_590425 0.16 AT3G02740.1
AT3G02740.2
AT3G02740
Eukaryotic aspartyl protease family protein
Chr3_+_18578306 0.16 AT3G50100.1
SDN1
small RNA degrading nuclease 1
Chr2_-_14222254 0.16 AT2G33580.1
LYK5
Protein kinase superfamily protein
Chr4_+_17369179 0.15 AT4G36870.3
AT4G36870.1
AT4G36870.4
BLH2
BEL1-like homeodomain 2
Chr3_-_4775258 0.15 AT3G14310.1
PME3
pectin methylesterase 3
Chr3_+_1940907 0.15 AT3G06400.2
AT3G06400.1
AT3G06400.3
CHR11
chromatin-remodeling protein 11
Chr1_-_3671191 0.14 AT1G10990.1
AT1G10990.2
AT1G10990
transmembrane protein
Chr2_-_10697175 0.14 AT2G25130.1
AT2G25130
ARM repeat superfamily protein
Chr4_+_14753819 0.14 AT4G30160.4
VLN4
villin 4
Chr1_-_26343150 0.14 AT1G69935.2
AT1G69935.1
SHW1
short hypocotyl in white light1

Network of associatons between targets according to the STRING database.

First level regulatory network of AT5G47220

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 0.8 GO:0010501 RNA secondary structure unwinding(GO:0010501)
0.3 0.8 GO:0033194 response to hydroperoxide(GO:0033194)
0.2 2.0 GO:0031930 alternative respiration(GO:0010230) mitochondria-nucleus signaling pathway(GO:0031930)
0.2 0.6 GO:0060776 simple leaf morphogenesis(GO:0060776)
0.2 0.8 GO:0097298 regulation of nucleus size(GO:0097298)
0.2 1.3 GO:0032890 amine transport(GO:0015837) regulation of organic acid transport(GO:0032890) regulation of amine transport(GO:0051952) regulation of amino acid transport(GO:0051955) regulation of amino acid export(GO:0080143)
0.1 0.3 GO:0051973 positive regulation of telomerase activity(GO:0051973)
0.1 0.8 GO:0016444 somatic cell DNA recombination(GO:0016444)
0.1 0.5 GO:0006564 L-serine biosynthetic process(GO:0006564)
0.1 0.5 GO:0010226 response to lithium ion(GO:0010226)
0.1 0.4 GO:0010438 cellular response to sulfur starvation(GO:0010438)
0.1 0.3 GO:0009143 nucleoside triphosphate catabolic process(GO:0009143)
0.1 0.3 GO:0099636 cytoplasmic streaming(GO:0099636)
0.1 0.2 GO:0080029 cellular response to boron-containing substance levels(GO:0080029)
0.1 0.3 GO:0048439 flower morphogenesis(GO:0048439)
0.1 0.3 GO:0010587 miRNA catabolic process(GO:0010587)
0.1 0.3 GO:1900367 positive regulation of defense response to insect(GO:1900367)
0.1 0.3 GO:0046218 tryptophan catabolic process(GO:0006569) indolalkylamine catabolic process(GO:0046218)
0.0 0.2 GO:0042450 arginine biosynthetic process via ornithine(GO:0042450)
0.0 0.1 GO:0090227 regulation of red or far-red light signaling pathway(GO:0090227)
0.0 0.9 GO:0009641 shade avoidance(GO:0009641)
0.0 0.2 GO:0019343 cysteine biosynthetic process via cystathionine(GO:0019343)
0.0 1.1 GO:0098869 cellular oxidant detoxification(GO:0098869)
0.0 0.3 GO:0009061 anaerobic respiration(GO:0009061)
0.0 0.3 GO:0016584 nucleosome positioning(GO:0016584)
0.0 0.1 GO:0010213 non-photoreactive DNA repair(GO:0010213)
0.0 0.1 GO:0090392 sepal giant cell differentiation(GO:0090392)
0.0 0.2 GO:0071323 cellular response to chitin(GO:0071323)
0.0 0.2 GO:0048830 adventitious root development(GO:0048830)
0.0 0.2 GO:0045910 negative regulation of DNA recombination(GO:0045910)
0.0 0.3 GO:0048363 mucilage pectin metabolic process(GO:0048363)
0.0 0.3 GO:0010371 regulation of gibberellin biosynthetic process(GO:0010371)
0.0 0.1 GO:0018315 molybdenum incorporation into molybdenum-molybdopterin complex(GO:0018315) metal incorporation into metallo-molybdopterin complex(GO:0042040)
0.0 0.3 GO:0052324 plant-type cell wall cellulose biosynthetic process(GO:0052324)
0.0 0.2 GO:2000757 histone H3-K9 demethylation(GO:0033169) negative regulation of histone acetylation(GO:0035067) negative regulation of protein acetylation(GO:1901984) negative regulation of peptidyl-lysine acetylation(GO:2000757)
0.0 0.1 GO:0010288 response to lead ion(GO:0010288)
0.0 0.2 GO:0060866 leaf abscission(GO:0060866)
0.0 0.3 GO:0048317 seed morphogenesis(GO:0048317)
0.0 0.2 GO:1902223 L-phenylalanine biosynthetic process(GO:0009094) erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process(GO:1902223)
0.0 0.1 GO:1902457 negative regulation of stomatal opening(GO:1902457)
0.0 0.1 GO:0046087 cytidine catabolic process(GO:0006216) cytidine deamination(GO:0009972) cytidine metabolic process(GO:0046087)
0.0 0.5 GO:0009861 jasmonic acid and ethylene-dependent systemic resistance(GO:0009861)
0.0 0.3 GO:2000142 regulation of DNA-templated transcription, initiation(GO:2000142)
0.0 2.4 GO:0080167 response to karrikin(GO:0080167)
0.0 0.2 GO:0022610 cell adhesion(GO:0007155) biological adhesion(GO:0022610)
0.0 0.2 GO:0050829 defense response to Gram-negative bacterium(GO:0050829)
0.0 0.6 GO:0009833 plant-type primary cell wall biogenesis(GO:0009833)
0.0 0.2 GO:0048354 mucilage biosynthetic process involved in seed coat development(GO:0048354)
0.0 0.1 GO:0090172 attachment of spindle microtubules to kinetochore involved in meiotic chromosome segregation(GO:0051316) attachment of spindle microtubules to kinetochore involved in homologous chromosome segregation(GO:0051455) microtubule cytoskeleton organization involved in homologous chromosome segregation(GO:0090172)
0.0 0.1 GO:0048871 multicellular organismal homeostasis(GO:0048871)
0.0 0.1 GO:0051365 cellular response to potassium ion starvation(GO:0051365)
0.0 0.8 GO:0043562 cellular response to nitrogen levels(GO:0043562)
0.0 0.2 GO:0010161 red light signaling pathway(GO:0010161)
0.0 0.2 GO:0009554 megasporogenesis(GO:0009554)
0.0 0.2 GO:0080163 regulation of protein serine/threonine phosphatase activity(GO:0080163)
0.0 0.3 GO:0052482 defense response by cell wall thickening(GO:0052482)
0.0 0.1 GO:0019419 sulfate reduction(GO:0019419)
0.0 0.2 GO:0031053 primary miRNA processing(GO:0031053)
0.0 0.2 GO:0010112 regulation of systemic acquired resistance(GO:0010112)
0.0 0.2 GO:0009299 mRNA transcription(GO:0009299)
0.0 0.1 GO:0006121 mitochondrial electron transport, succinate to ubiquinone(GO:0006121)
0.0 0.1 GO:0033619 membrane protein proteolysis(GO:0033619)
0.0 0.1 GO:0017182 peptidyl-diphthamide metabolic process(GO:0017182) peptidyl-diphthamide biosynthetic process from peptidyl-histidine(GO:0017183) peptidyl-histidine modification(GO:0018202)
0.0 1.6 GO:0010200 response to chitin(GO:0010200)
0.0 0.2 GO:0043101 purine nucleotide salvage(GO:0032261) purine-containing compound salvage(GO:0043101)
0.0 0.1 GO:1902290 positive regulation of defense response to oomycetes(GO:1902290)
0.0 0.1 GO:0046294 formaldehyde catabolic process(GO:0046294)
0.0 0.0 GO:0048462 transmitting tissue development(GO:0010500) carpel formation(GO:0048462)
0.0 0.4 GO:0016126 sterol biosynthetic process(GO:0016126)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 0.8 GO:0005652 nuclear lamina(GO:0005652)
0.1 0.8 GO:0031588 nucleotide-activated protein kinase complex(GO:0031588)
0.0 0.3 GO:0009538 photosystem I reaction center(GO:0009538)
0.0 0.1 GO:0000110 nucleotide-excision repair factor 1 complex(GO:0000110)
0.0 0.3 GO:0010445 nuclear dicing body(GO:0010445)
0.0 0.1 GO:0009514 glyoxysome(GO:0009514)
0.0 0.2 GO:0032300 mismatch repair complex(GO:0032300)
0.0 0.1 GO:0017053 transcriptional repressor complex(GO:0017053)
0.0 0.1 GO:0098576 integral component of lumenal side of endoplasmic reticulum membrane(GO:0071556) lumenal side of endoplasmic reticulum membrane(GO:0098553) lumenal side of membrane(GO:0098576)
0.0 0.1 GO:0005851 eukaryotic translation initiation factor 2B complex(GO:0005851)
0.0 0.7 GO:0016607 nuclear speck(GO:0016607)
0.0 3.3 GO:0031225 anchored component of membrane(GO:0031225)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 2.0 GO:0047274 galactinol-sucrose galactosyltransferase activity(GO:0047274)
0.3 0.8 GO:0036381 pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity(GO:0036381)
0.3 2.0 GO:0009916 alternative oxidase activity(GO:0009916)
0.2 0.7 GO:0050736 O-malonyltransferase activity(GO:0050736)
0.2 0.8 GO:1901982 disaccharide binding(GO:0048030) maltose binding(GO:1901982)
0.1 0.5 GO:0004617 phosphoglycerate dehydrogenase activity(GO:0004617)
0.1 0.8 GO:0004566 beta-glucuronidase activity(GO:0004566)
0.1 0.3 GO:0036218 dTTP diphosphatase activity(GO:0036218)
0.1 0.3 GO:0004127 cytidylate kinase activity(GO:0004127)
0.1 0.2 GO:0008909 isochorismate synthase activity(GO:0008909)
0.1 0.4 GO:0052655 L-leucine transaminase activity(GO:0052654) L-valine transaminase activity(GO:0052655) L-isoleucine transaminase activity(GO:0052656)
0.1 0.4 GO:0004506 squalene monooxygenase activity(GO:0004506)
0.0 0.2 GO:0010313 phytochrome binding(GO:0010313)
0.0 0.1 GO:0008936 nicotinamidase activity(GO:0008936)
0.0 0.3 GO:0008131 primary amine oxidase activity(GO:0008131)
0.0 0.3 GO:0035198 miRNA binding(GO:0035198)
0.0 0.1 GO:0008442 3-hydroxyisobutyrate dehydrogenase activity(GO:0008442)
0.0 0.3 GO:0047372 acylglycerol lipase activity(GO:0047372)
0.0 0.1 GO:0031492 nucleosomal DNA binding(GO:0031492)
0.0 0.2 GO:0004123 cystathionine gamma-lyase activity(GO:0004123)
0.0 0.1 GO:0016856 racemase and epimerase activity, acting on hydroxy acids and derivatives(GO:0016856)
0.0 1.1 GO:0016759 cellulose synthase activity(GO:0016759)
0.0 0.2 GO:0052623 ATP dimethylallyltransferase activity(GO:0052622) ADP dimethylallyltransferase activity(GO:0052623)
0.0 0.1 GO:0004126 cytidine deaminase activity(GO:0004126)
0.0 0.1 GO:0004664 prephenate dehydratase activity(GO:0004664) arogenate dehydratase activity(GO:0047769)
0.0 0.3 GO:0016783 sulfurtransferase activity(GO:0016783)
0.0 0.5 GO:0008810 cellulase activity(GO:0008810)
0.0 0.1 GO:0032791 lead ion binding(GO:0032791)
0.0 0.2 GO:0034647 histone demethylase activity (H3-K4 specific)(GO:0032453) histone demethylase activity (H3-trimethyl-K4 specific)(GO:0034647)
0.0 0.1 GO:0008177 succinate dehydrogenase (ubiquinone) activity(GO:0008177)
0.0 0.2 GO:0004069 L-aspartate:2-oxoglutarate aminotransferase activity(GO:0004069)
0.0 0.4 GO:0097602 cullin family protein binding(GO:0097602)
0.0 0.1 GO:0017108 5'-flap endonuclease activity(GO:0017108)
0.0 0.1 GO:0042500 aspartic endopeptidase activity, intramembrane cleaving(GO:0042500)
0.0 0.2 GO:0019239 deaminase activity(GO:0019239)
0.0 0.2 GO:0030983 mismatched DNA binding(GO:0030983)
0.0 0.1 GO:0003955 NAD(P)H dehydrogenase (quinone) activity(GO:0003955)
0.0 0.1 GO:0030151 molybdenum ion binding(GO:0030151)
0.0 0.8 GO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001228)
0.0 0.1 GO:0010277 chlorophyllide a oxygenase [overall] activity(GO:0010277)
0.0 0.4 GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262)
0.0 0.1 GO:0004024 alcohol dehydrogenase activity, zinc-dependent(GO:0004024)
0.0 0.2 GO:0008061 chitin binding(GO:0008061)
0.0 0.2 GO:0004864 protein phosphatase inhibitor activity(GO:0004864)
0.0 0.4 GO:0080030 methyl indole-3-acetate esterase activity(GO:0080030)
0.0 0.8 GO:0046910 pectinesterase inhibitor activity(GO:0046910)
0.0 0.2 GO:1900750 glutathione binding(GO:0043295) oligopeptide binding(GO:1900750)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.8 PID VEGF VEGFR PATHWAY VEGF and VEGFR signaling network
0.0 0.1 PID AP1 PATHWAY AP-1 transcription factor network

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 0.8 REACTOME SEMAPHORIN INTERACTIONS Genes involved in Semaphorin interactions
0.0 0.2 REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES Genes involved in Metabolism of amino acids and derivatives
0.0 0.1 REACTOME FORMATION OF INCISION COMPLEX IN GG NER Genes involved in Formation of incision complex in GG-NER
0.0 0.1 REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE Genes involved in Dopamine Neurotransmitter Release Cycle