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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT5G46830
Z-value: 1.27
Transcription factors associated with AT5G46830
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G46830
|
AT5G46830 | calcium-binding transcription factor NIG1 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| NIG1 | arTal_v1_Chr5_+_19002564_19002564 | -0.02 | 9.5e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_+_16441808_16441808 Show fit | 2.12 |
AT5G41080.2
|
PLC-like phosphodiesterases superfamily protein |
|
| arTal_v1_Chr5_+_16441655_16441655 Show fit | 2.10 |
AT5G41080.1
|
PLC-like phosphodiesterases superfamily protein |
|
| arTal_v1_Chr5_-_19036938_19036938 Show fit | 1.71 |
AT5G46890.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr5_+_6833564_6833659 Show fit | 1.68 |
AT5G20250.2
AT5G20250.1 AT5G20250.4 AT5G20250.3 |
Raffinose synthase family protein |
|
| arTal_v1_Chr3_+_20354351_20354351 Show fit | 1.67 |
AT3G54940.3
AT3G54940.2 |
Papain family cysteine protease |
|
| arTal_v1_Chr1_+_20458952_20459006 Show fit | 1.63 |
AT1G54870.2
AT1G54870.1 |
NAD(P)-binding Rossmann-fold superfamily protein |
|
| arTal_v1_Chr1_+_12851983_12851983 Show fit | 1.56 |
AT1G35140.1
|
Phosphate-responsive 1 family protein |
|
| arTal_v1_Chr3_-_11194897_11194993 Show fit | 1.51 |
AT3G29250.2
AT3G29250.1 |
NAD(P)-binding Rossmann-fold superfamily protein |
|
| arTal_v1_Chr3_-_790693_790693 Show fit | 1.49 |
AT3G03341.1
|
cold-regulated protein |
|
| arTal_v1_Chr4_-_9754161_9754161 Show fit | 1.49 |
AT4G17490.1
|
ethylene responsive element binding factor 6 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G46830
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 10.6 | GO:0010200 | response to chitin(GO:0010200) |
| 0.0 | 4.6 | GO:0010410 | hemicellulose metabolic process(GO:0010410) |
| 0.0 | 4.4 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 1.1 | 4.2 | GO:0046475 | glycerophospholipid catabolic process(GO:0046475) |
| 0.7 | 4.0 | GO:0006567 | threonine catabolic process(GO:0006567) |
| 0.2 | 3.6 | GO:0019430 | removal of superoxide radicals(GO:0019430) cellular response to oxygen radical(GO:0071450) cellular response to superoxide(GO:0071451) |
| 0.0 | 3.6 | GO:0043086 | negative regulation of catalytic activity(GO:0043086) |
| 0.1 | 3.1 | GO:0016126 | sterol biosynthetic process(GO:0016126) |
| 0.6 | 2.8 | GO:0019310 | inositol catabolic process(GO:0019310) |
| 0.1 | 2.8 | GO:0050826 | response to freezing(GO:0050826) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 51.3 | GO:0005576 | extracellular region(GO:0005576) |
| 0.1 | 18.0 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 8.0 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.2 | 3.8 | GO:0012511 | monolayer-surrounded lipid storage body(GO:0012511) |
| 0.0 | 3.5 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
| 0.0 | 2.9 | GO:0005789 | endoplasmic reticulum membrane(GO:0005789) |
| 0.2 | 2.3 | GO:0000326 | storage vacuole(GO:0000322) protein storage vacuole(GO:0000326) |
| 0.4 | 2.1 | GO:0035061 | interchromatin granule(GO:0035061) |
| 0.0 | 1.9 | GO:0090406 | pollen tube(GO:0090406) |
| 0.1 | 1.7 | GO:0005811 | lipid particle(GO:0005811) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 8.3 | GO:0004857 | enzyme inhibitor activity(GO:0004857) |
| 0.4 | 4.9 | GO:0008889 | glycerophosphodiester phosphodiesterase activity(GO:0008889) |
| 0.8 | 4.2 | GO:0004793 | threonine aldolase activity(GO:0004793) L-allo-threonine aldolase activity(GO:0008732) |
| 0.1 | 3.0 | GO:0015385 | sodium:proton antiporter activity(GO:0015385) |
| 0.1 | 2.9 | GO:0003993 | acid phosphatase activity(GO:0003993) |
| 0.6 | 2.8 | GO:0050113 | inositol oxygenase activity(GO:0050113) |
| 0.1 | 2.7 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 0.0 | 2.5 | GO:0004190 | aspartic-type endopeptidase activity(GO:0004190) |
| 0.3 | 2.4 | GO:0047274 | galactinol-sucrose galactosyltransferase activity(GO:0047274) |
| 0.2 | 2.4 | GO:0015145 | monosaccharide transmembrane transporter activity(GO:0015145) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.0 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
| 0.1 | 0.9 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
| 0.2 | 0.8 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
| 0.2 | 0.7 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
| 0.2 | 0.6 | PID NFAT TFPATHWAY | Calcineurin-regulated NFAT-dependent transcription in lymphocytes |
| 0.0 | 0.5 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
| 0.1 | 0.4 | PID ERA GENOMIC PATHWAY | Validated nuclear estrogen receptor alpha network |
| 0.0 | 0.3 | PID CXCR4 PATHWAY | CXCR4-mediated signaling events |
| 0.0 | 0.3 | PID ATR PATHWAY | ATR signaling pathway |
| 0.1 | 0.2 | PID PI3KCI PATHWAY | Class I PI3K signaling events |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.2 | REACTOME G1 S SPECIFIC TRANSCRIPTION | Genes involved in G1/S-Specific Transcription |
| 0.1 | 1.1 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |
| 0.3 | 1.0 | REACTOME REGULATION OF HYPOXIA INDUCIBLE FACTOR HIF BY OXYGEN | Genes involved in Regulation of Hypoxia-inducible Factor (HIF) by Oxygen |
| 0.1 | 0.9 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.2 | 0.7 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.1 | 0.7 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
| 0.2 | 0.6 | REACTOME INTRINSIC PATHWAY FOR APOPTOSIS | Genes involved in Intrinsic Pathway for Apoptosis |
| 0.1 | 0.5 | REACTOME TRANSCRIPTIONAL REGULATION OF WHITE ADIPOCYTE DIFFERENTIATION | Genes involved in Transcriptional Regulation of White Adipocyte Differentiation |
| 0.0 | 0.5 | REACTOME ABCA TRANSPORTERS IN LIPID HOMEOSTASIS | Genes involved in ABCA transporters in lipid homeostasis |
| 0.1 | 0.3 | REACTOME BIOLOGICAL OXIDATIONS | Genes involved in Biological oxidations |