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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT5G45580
Z-value: 1.06
Transcription factors associated with AT5G45580
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G45580
|
AT5G45580 | Homeodomain-like superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT5G45580 | arTal_v1_Chr5_-_18482643_18482643 | 0.05 | 8.7e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_+_6826587_6826587 Show fit | 1.52 |
AT4G11190.1
|
Disease resistance-responsive (dirigent-like protein) family protein |
|
| arTal_v1_Chr4_+_2449434_2449434 Show fit | 1.47 |
AT4G04840.1
|
methionine sulfoxide reductase B6 |
|
| arTal_v1_Chr5_+_1119937_1119937 Show fit | 1.36 |
AT5G04120.1
|
Phosphoglycerate mutase family protein |
|
| arTal_v1_Chr5_-_19036938_19036938 Show fit | 1.31 |
AT5G46890.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr5_+_16441808_16441808 Show fit | 1.31 |
AT5G41080.2
|
PLC-like phosphodiesterases superfamily protein |
|
| arTal_v1_Chr3_-_11194897_11194993 Show fit | 1.30 |
AT3G29250.2
AT3G29250.1 |
NAD(P)-binding Rossmann-fold superfamily protein |
|
| arTal_v1_Chr5_+_16441655_16441655 Show fit | 1.29 |
AT5G41080.1
|
PLC-like phosphodiesterases superfamily protein |
|
| arTal_v1_Chr5_-_15135169_15135169 Show fit | 1.26 |
AT5G37990.1
|
S-adenosyl-L-methionine-dependent methyltransferase superfamily protein |
|
| arTal_v1_Chr5_-_15378416_15378416 Show fit | 1.21 |
AT5G38410.3
AT5G38410.2 |
Ribulose bisphosphate carboxylase (small chain) family protein |
|
| arTal_v1_Chr5_-_15378642_15378642 Show fit | 1.21 |
AT5G38410.1
|
Ribulose bisphosphate carboxylase (small chain) family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G45580
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 6.2 | GO:0010200 | response to chitin(GO:0010200) |
| 0.1 | 4.8 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 0.1 | 3.1 | GO:0030091 | protein repair(GO:0030091) |
| 0.2 | 2.8 | GO:0030388 | fructose 1,6-bisphosphate metabolic process(GO:0030388) |
| 0.7 | 2.7 | GO:0046475 | glycerophospholipid catabolic process(GO:0046475) |
| 0.1 | 2.2 | GO:0016126 | sterol biosynthetic process(GO:0016126) |
| 0.0 | 2.2 | GO:0048024 | regulation of mRNA splicing, via spliceosome(GO:0048024) |
| 0.0 | 2.2 | GO:0043086 | negative regulation of catalytic activity(GO:0043086) |
| 0.0 | 2.1 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.1 | 1.9 | GO:0009691 | cytokinin biosynthetic process(GO:0009691) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 33.5 | GO:0005576 | extracellular region(GO:0005576) |
| 0.0 | 7.5 | GO:0048046 | apoplast(GO:0048046) |
| 0.0 | 6.6 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.0 | 4.2 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 4.0 | GO:0005615 | extracellular space(GO:0005615) |
| 0.1 | 1.7 | GO:0012511 | monolayer-surrounded lipid storage body(GO:0012511) |
| 0.1 | 1.3 | GO:0016324 | apical plasma membrane(GO:0016324) |
| 0.2 | 1.2 | GO:0035061 | interchromatin granule(GO:0035061) |
| 0.0 | 1.1 | GO:0005811 | lipid particle(GO:0005811) |
| 0.0 | 1.1 | GO:0000145 | exocyst(GO:0000145) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 3.4 | GO:0033946 | xyloglucan-specific endo-beta-1,4-glucanase activity(GO:0033946) |
| 0.5 | 3.3 | GO:0016984 | ribulose-bisphosphate carboxylase activity(GO:0016984) |
| 0.2 | 3.3 | GO:0008889 | glycerophosphodiester phosphodiesterase activity(GO:0008889) |
| 0.3 | 3.2 | GO:0033743 | peptide-methionine (R)-S-oxide reductase activity(GO:0033743) |
| 0.2 | 2.8 | GO:0004332 | fructose-bisphosphate aldolase activity(GO:0004332) |
| 0.0 | 2.8 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 0.1 | 2.1 | GO:0015174 | basic amino acid transmembrane transporter activity(GO:0015174) |
| 0.1 | 2.1 | GO:0004565 | beta-galactosidase activity(GO:0004565) galactosidase activity(GO:0015925) |
| 0.0 | 2.1 | GO:0008171 | O-methyltransferase activity(GO:0008171) |
| 0.0 | 2.1 | GO:0008134 | transcription factor binding(GO:0008134) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.8 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
| 0.2 | 0.7 | PID AURORA A PATHWAY | Aurora A signaling |
| 0.1 | 0.7 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
| 0.1 | 0.6 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
| 0.2 | 0.5 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
| 0.2 | 0.5 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.1 | 0.4 | PID VEGF VEGFR PATHWAY | VEGF and VEGFR signaling network |
| 0.1 | 0.3 | PID ERA GENOMIC PATHWAY | Validated nuclear estrogen receptor alpha network |
| 0.0 | 0.3 | PID CXCR4 PATHWAY | CXCR4-mediated signaling events |
| 0.1 | 0.2 | PID INTEGRIN A4B1 PATHWAY | Alpha4 beta1 integrin signaling events |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.0 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.2 | 0.8 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
| 0.1 | 0.7 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |
| 0.1 | 0.7 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.1 | 0.5 | REACTOME MHC CLASS II ANTIGEN PRESENTATION | Genes involved in MHC class II antigen presentation |
| 0.1 | 0.4 | REACTOME VEGF LIGAND RECEPTOR INTERACTIONS | Genes involved in VEGF ligand-receptor interactions |
| 0.0 | 0.4 | REACTOME CDT1 ASSOCIATION WITH THE CDC6 ORC ORIGIN COMPLEX | Genes involved in CDT1 association with the CDC6:ORC:origin complex |
| 0.1 | 0.3 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
| 0.0 | 0.3 | REACTOME GENERIC TRANSCRIPTION PATHWAY | Genes involved in Generic Transcription Pathway |
| 0.0 | 0.3 | REACTOME RNA POL II TRANSCRIPTION PRE INITIATION AND PROMOTER OPENING | Genes involved in RNA Polymerase II Transcription Pre-Initiation And Promoter Opening |