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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT5G45300
Z-value: 1.02
Transcription factors associated with AT5G45300
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G45300
|
AT5G45300 | beta-amylase 2 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| BMY2 | arTal_v1_Chr5_+_18353525_18353610 | -0.47 | 8.8e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_4104463_4104463 Show fit | 2.08 |
AT3G12900.1
|
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
|
| arTal_v1_Chr3_-_82182_82182 Show fit | 1.63 |
AT3G01260.1
|
Galactose mutarotase-like superfamily protein |
|
| arTal_v1_Chr5_+_5205869_5205869 Show fit | 1.61 |
AT5G15950.1
|
Adenosylmethionine decarboxylase family protein |
|
| arTal_v1_Chr5_+_5206156_5206156 Show fit | 1.58 |
AT5G15950.2
|
Adenosylmethionine decarboxylase family protein |
|
| arTal_v1_Chr4_-_16285229_16285229 Show fit | 1.45 |
AT4G33980.1
|
hypothetical protein |
|
| arTal_v1_Chr4_-_13022996_13022996 Show fit | 1.45 |
AT4G25490.1
|
C-repeat/DRE binding factor 1 |
|
| arTal_v1_Chr4_-_16285059_16285059 Show fit | 1.43 |
AT4G33980.2
|
hypothetical protein |
|
| arTal_v1_Chr4_+_12827856_12827937 Show fit | 1.35 |
AT4G24960.1
AT4G24960.3 AT4G24960.2 |
HVA22 homologue D |
|
| arTal_v1_Chr2_+_538250_538250 Show fit | 1.34 |
AT2G02120.1
|
Scorpion toxin-like knottin superfamily protein |
|
| arTal_v1_Chr4_+_10707344_10707378 Show fit | 1.31 |
AT4G19690.2
AT4G19690.1 |
iron-regulated transporter 1 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G45300
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 3.1 | GO:0055072 | iron ion homeostasis(GO:0055072) |
| 0.0 | 2.0 | GO:0009631 | cold acclimation(GO:0009631) |
| 0.4 | 1.8 | GO:0019388 | galactose catabolic process(GO:0019388) galactose catabolic process via UDP-galactose(GO:0033499) |
| 0.0 | 1.7 | GO:0010029 | regulation of seed germination(GO:0010029) |
| 0.5 | 1.5 | GO:1990532 | stress response to nickel ion(GO:1990532) |
| 0.3 | 1.3 | GO:0010507 | negative regulation of autophagy(GO:0010507) |
| 0.3 | 1.3 | GO:0015675 | nickel cation transport(GO:0015675) |
| 0.2 | 1.3 | GO:0010106 | cellular response to iron ion starvation(GO:0010106) |
| 0.1 | 1.3 | GO:0048766 | root hair initiation(GO:0048766) |
| 0.2 | 1.2 | GO:0010086 | embryonic root morphogenesis(GO:0010086) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 6.5 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 1.2 | GO:0000138 | Golgi trans cisterna(GO:0000138) |
| 0.1 | 0.7 | GO:0005687 | U4 snRNP(GO:0005687) |
| 0.0 | 0.7 | GO:0009986 | cell surface(GO:0009986) |
| 0.0 | 0.7 | GO:0012511 | monolayer-surrounded lipid storage body(GO:0012511) |
| 0.0 | 0.6 | GO:0005764 | lysosome(GO:0005764) |
| 0.1 | 0.5 | GO:0045252 | oxoglutarate dehydrogenase complex(GO:0045252) |
| 0.0 | 0.5 | GO:0045298 | tubulin complex(GO:0045298) |
| 0.0 | 0.5 | GO:0098554 | integral component of cytoplasmic side of endoplasmic reticulum membrane(GO:0071458) cytoplasmic side of endoplasmic reticulum membrane(GO:0098554) |
| 0.0 | 0.5 | GO:0008540 | proteasome regulatory particle, base subcomplex(GO:0008540) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 2.3 | GO:0000293 | ferric-chelate reductase activity(GO:0000293) oxidoreductase activity, oxidizing metal ions, NAD or NADP as acceptor(GO:0016723) |
| 0.2 | 1.8 | GO:0090447 | glycerol-3-phosphate 2-O-acyltransferase activity(GO:0090447) |
| 0.5 | 1.6 | GO:0004034 | aldose 1-epimerase activity(GO:0004034) |
| 0.3 | 1.6 | GO:0052691 | UDP-arabinopyranose mutase activity(GO:0052691) |
| 0.0 | 1.4 | GO:0048029 | monosaccharide binding(GO:0048029) |
| 0.1 | 1.3 | GO:0015086 | cadmium ion transmembrane transporter activity(GO:0015086) |
| 0.2 | 1.2 | GO:0010295 | (+)-abscisic acid 8'-hydroxylase activity(GO:0010295) |
| 0.0 | 1.2 | GO:0004568 | chitinase activity(GO:0004568) |
| 0.0 | 1.1 | GO:0000156 | phosphorelay response regulator activity(GO:0000156) |
| 0.2 | 1.0 | GO:0003680 | AT DNA binding(GO:0003680) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 0.7 | NABA SECRETED FACTORS | Genes encoding secreted soluble factors |
| 0.1 | 0.4 | PID ARF6 DOWNSTREAM PATHWAY | Arf6 downstream pathway |
| 0.1 | 0.4 | PID HDAC CLASSII PATHWAY | Signaling events mediated by HDAC Class II |
| 0.1 | 0.4 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.1 | 0.4 | PID P73PATHWAY | p73 transcription factor network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 1.1 | REACTOME INTEGRATION OF ENERGY METABOLISM | Genes involved in Integration of energy metabolism |
| 0.1 | 1.0 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.1 | 0.4 | REACTOME INTRINSIC PATHWAY FOR APOPTOSIS | Genes involved in Intrinsic Pathway for Apoptosis |
| 0.1 | 0.4 | REACTOME PLATELET ACTIVATION SIGNALING AND AGGREGATION | Genes involved in Platelet activation, signaling and aggregation |
| 0.1 | 0.3 | REACTOME BIOSYNTHESIS OF THE N GLYCAN PRECURSOR DOLICHOL LIPID LINKED OLIGOSACCHARIDE LLO AND TRANSFER TO A NASCENT PROTEIN | Genes involved in Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein |
| 0.1 | 0.3 | REACTOME PI METABOLISM | Genes involved in PI Metabolism |
| 0.0 | 0.2 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |
| 0.0 | 0.2 | REACTOME INNATE IMMUNE SYSTEM | Genes involved in Innate Immune System |