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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT5G41570
Z-value: 1.55
Transcription factors associated with AT5G41570
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G41570
|
AT5G41570 | WRKY DNA-binding protein 24 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| WRKY24 | arTal_v1_Chr5_+_16624157_16624157 | 0.81 | 4.6e-04 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_-_27569823_27569823 Show fit | 2.63 |
AT1G73330.1
|
drought-repressed 4 |
|
| arTal_v1_Chr5_+_23337832_23337832 Show fit | 2.03 |
AT5G57625.1
|
CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein |
|
| arTal_v1_Chr5_+_26894778_26894778 Show fit | 2.02 |
AT5G67400.1
|
root hair specific 19 |
|
| arTal_v1_Chr5_-_14213293_14213293 Show fit | 1.94 |
AT5G36140.1
|
cytochrome P450, family 716, subfamily A, polypeptide 2 |
|
| arTal_v1_Chr5_+_19434758_19434758 Show fit | 1.90 |
AT5G47990.1
|
cytochrome P450, family 705, subfamily A, polypeptide 5 |
|
| arTal_v1_Chr1_+_29135904_29135904 Show fit | 1.87 |
AT1G77530.1
AT1G77530.2 |
O-methyltransferase family protein |
|
| arTal_v1_Chr1_+_4662698_4662752 Show fit | 1.86 |
AT1G13609.1
AT1G13609.2 |
Defensin-like (DEFL) family protein |
|
| arTal_v1_Chr5_+_22075277_22075277 Show fit | 1.85 |
AT5G54370.1
|
Late embryogenesis abundant (LEA) protein-like protein |
|
| arTal_v1_Chr5_-_16252434_16252434 Show fit | 1.82 |
AT5G40590.1
|
Cysteine/Histidine-rich C1 domain family protein |
|
| arTal_v1_Chr5_-_19036938_19036938 Show fit | 1.73 |
AT5G46890.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G41570
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 5.2 | GO:0016998 | cell wall macromolecule catabolic process(GO:0016998) |
| 0.1 | 4.6 | GO:0048767 | root hair elongation(GO:0048767) |
| 0.0 | 3.9 | GO:0080167 | response to karrikin(GO:0080167) |
| 0.3 | 3.7 | GO:0052547 | negative regulation of peptidase activity(GO:0010466) regulation of peptidase activity(GO:0052547) |
| 0.9 | 3.4 | GO:0080003 | thalianol metabolic process(GO:0080003) |
| 0.2 | 3.2 | GO:0052325 | cell wall pectin biosynthetic process(GO:0052325) |
| 0.1 | 3.2 | GO:0045492 | xylan biosynthetic process(GO:0045492) |
| 0.1 | 3.1 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 0.2 | 2.7 | GO:0009969 | xyloglucan biosynthetic process(GO:0009969) |
| 0.0 | 2.5 | GO:0010311 | lateral root formation(GO:0010311) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 36.2 | GO:0005576 | extracellular region(GO:0005576) |
| 0.0 | 17.3 | GO:0009506 | cell-cell junction(GO:0005911) plasmodesma(GO:0009506) cell junction(GO:0030054) symplast(GO:0055044) |
| 0.0 | 7.3 | GO:0030312 | cell wall(GO:0005618) external encapsulating structure(GO:0030312) |
| 0.0 | 6.1 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.0 | 5.9 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.0 | 5.3 | GO:0009705 | plant-type vacuole membrane(GO:0009705) |
| 0.0 | 4.8 | GO:0005774 | vacuolar membrane(GO:0005774) |
| 0.0 | 3.6 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.5 | 2.2 | GO:0031314 | extrinsic component of mitochondrial inner membrane(GO:0031314) |
| 0.1 | 2.2 | GO:0000145 | exocyst(GO:0000145) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 8.8 | GO:0004601 | peroxidase activity(GO:0004601) |
| 0.2 | 4.4 | GO:0004568 | chitinase activity(GO:0004568) |
| 0.1 | 4.4 | GO:0008553 | hydrogen-exporting ATPase activity, phosphorylative mechanism(GO:0008553) |
| 0.5 | 4.3 | GO:0033946 | xyloglucan-specific endo-beta-1,4-glucanase activity(GO:0033946) |
| 0.0 | 4.2 | GO:0016709 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen(GO:0016709) |
| 0.0 | 4.2 | GO:0005507 | copper ion binding(GO:0005507) |
| 0.0 | 4.0 | GO:0009055 | electron carrier activity(GO:0009055) |
| 0.1 | 3.7 | GO:0005385 | zinc ion transmembrane transporter activity(GO:0005385) |
| 0.0 | 3.7 | GO:0030599 | pectinesterase activity(GO:0030599) |
| 0.1 | 3.1 | GO:0052716 | hydroquinone:oxygen oxidoreductase activity(GO:0052716) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 1.5 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
| 0.1 | 0.9 | PID CXCR4 PATHWAY | CXCR4-mediated signaling events |
| 0.1 | 0.8 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
| 0.3 | 0.6 | PID INTEGRIN A4B1 PATHWAY | Alpha4 beta1 integrin signaling events |
| 0.1 | 0.6 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.1 | 0.5 | PID P53 DOWNSTREAM PATHWAY | Direct p53 effectors |
| 0.1 | 0.4 | SIG CHEMOTAXIS | Genes related to chemotaxis |
| 0.1 | 0.3 | PID REELIN PATHWAY | Reelin signaling pathway |
| 0.0 | 0.3 | PID ATR PATHWAY | ATR signaling pathway |
| 0.1 | 0.2 | ST INTEGRIN SIGNALING PATHWAY | Integrin Signaling Pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 1.0 | REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS | Genes involved in Synthesis of bile acids and bile salts |
| 0.1 | 0.8 | REACTOME PPARA ACTIVATES GENE EXPRESSION | Genes involved in PPARA Activates Gene Expression |
| 0.2 | 0.7 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.1 | 0.7 | REACTOME PROLACTIN RECEPTOR SIGNALING | Genes involved in Prolactin receptor signaling |
| 0.1 | 0.7 | REACTOME LAGGING STRAND SYNTHESIS | Genes involved in Lagging Strand Synthesis |
| 0.2 | 0.6 | REACTOME HDL MEDIATED LIPID TRANSPORT | Genes involved in HDL-mediated lipid transport |
| 0.2 | 0.5 | REACTOME NEUROTRANSMITTER RECEPTOR BINDING AND DOWNSTREAM TRANSMISSION IN THE POSTSYNAPTIC CELL | Genes involved in Neurotransmitter Receptor Binding And Downstream Transmission In The Postsynaptic Cell |
| 0.1 | 0.5 | REACTOME INTRINSIC PATHWAY FOR APOPTOSIS | Genes involved in Intrinsic Pathway for Apoptosis |
| 0.1 | 0.5 | REACTOME GLUCOSE METABOLISM | Genes involved in Glucose metabolism |
| 0.1 | 0.5 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |