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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT5G41315
Z-value: 1.46
Transcription factors associated with AT5G41315
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G41315
|
AT5G41315 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| GL3 | arTal_v1_Chr5_+_16529455_16529455 | 0.28 | 3.3e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_+_8839256_8839387 Show fit | 1.87 |
AT4G15450.1
AT4G15450.2 |
Senescence/dehydration-associated protein-like protein |
|
| arTal_v1_Chr3_-_1958304_1958304 Show fit | 1.82 |
AT3G06430.1
|
Tetratricopeptide repeat (TPR)-like superfamily protein |
|
| arTal_v1_Chr3_-_17506124_17506124 Show fit | 1.81 |
AT3G47500.1
|
cycling DOF factor 3 |
|
| arTal_v1_Chr4_-_18551183_18551183 Show fit | 1.77 |
AT4G40010.1
|
SNF1-related protein kinase 2.7 |
|
| arTal_v1_Chr3_+_484256_484287 Show fit | 1.73 |
AT3G02370.1
AT3G02370.4 AT3G02370.2 AT3G02370.3 |
tRNA-splicing endonuclease subunit |
|
| arTal_v1_Chr3_+_8941066_8941066 Show fit | 1.66 |
AT3G24520.1
|
heat shock transcription factor C1 |
|
| arTal_v1_Chr5_-_2697724_2697781 Show fit | 1.60 |
AT5G08380.2
AT5G08380.1 |
alpha-galactosidase 1 |
|
| arTal_v1_Chr4_+_1321758_1321843 Show fit | 1.51 |
AT4G02990.1
AT4G02990.2 |
Mitochondrial transcription termination factor family protein |
|
| arTal_v1_Chr5_+_16979773_16979773 Show fit | 1.49 |
AT5G42460.1
|
F-box and associated interaction domains-containing protein |
|
| arTal_v1_Chr3_-_3119391_3119391 Show fit | 1.47 |
AT3G10113.1
|
Homeodomain-like superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G41315
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.2 | 3.5 | GO:0055068 | nickel cation transmembrane transport(GO:0035444) cobalt ion homeostasis(GO:0055068) |
| 0.0 | 3.3 | GO:0080167 | response to karrikin(GO:0080167) |
| 0.1 | 2.7 | GO:0009773 | photosynthetic electron transport in photosystem I(GO:0009773) |
| 0.1 | 2.7 | GO:0042762 | regulation of sulfur metabolic process(GO:0042762) |
| 0.1 | 2.3 | GO:0000462 | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)(GO:0000462) |
| 0.2 | 2.1 | GO:0080110 | sporopollenin biosynthetic process(GO:0080110) |
| 0.0 | 2.1 | GO:0009658 | chloroplast organization(GO:0009658) |
| 0.1 | 2.0 | GO:0042026 | protein refolding(GO:0042026) |
| 0.2 | 1.9 | GO:0010190 | cytochrome b6f complex assembly(GO:0010190) |
| 0.0 | 1.8 | GO:0048506 | regulation of timing of meristematic phase transition(GO:0048506) regulation of timing of transition from vegetative to reproductive phase(GO:0048510) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 4.0 | GO:0009705 | plant-type vacuole membrane(GO:0009705) |
| 0.0 | 4.0 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.1 | 3.8 | GO:0009528 | plastid inner membrane(GO:0009528) |
| 0.0 | 2.9 | GO:0000790 | nuclear chromatin(GO:0000790) |
| 0.2 | 2.7 | GO:0010598 | NAD(P)H dehydrogenase complex (plastoquinone)(GO:0010598) |
| 0.0 | 2.3 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
| 0.3 | 2.1 | GO:0005854 | nascent polypeptide-associated complex(GO:0005854) |
| 0.0 | 2.1 | GO:0005797 | Golgi medial cisterna(GO:0005797) |
| 0.3 | 1.7 | GO:0000214 | tRNA-intron endonuclease complex(GO:0000214) |
| 0.0 | 1.7 | GO:0009524 | phragmoplast(GO:0009524) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 4.7 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 1.2 | 3.5 | GO:0015087 | cobalt ion transmembrane transporter activity(GO:0015087) nickel cation transmembrane transporter activity(GO:0015099) |
| 0.0 | 3.4 | GO:0016887 | ATPase activity(GO:0016887) |
| 0.0 | 3.3 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.0 | 2.5 | GO:0003779 | actin binding(GO:0003779) |
| 0.0 | 2.2 | GO:0003724 | RNA helicase activity(GO:0003724) |
| 0.2 | 2.0 | GO:0047938 | glucose-6-phosphate 1-epimerase activity(GO:0047938) |
| 0.0 | 1.8 | GO:0019843 | rRNA binding(GO:0019843) |
| 0.4 | 1.7 | GO:0047215 | indole-3-acetate beta-glucosyltransferase activity(GO:0047215) UDP-glucose:4-aminobenzoate acylglucosyltransferase activity(GO:0080002) |
| 0.5 | 1.6 | GO:0052692 | alpha-galactosidase activity(GO:0004557) raffinose alpha-galactosidase activity(GO:0052692) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 1.6 | ST GAQ PATHWAY | G alpha q Pathway |
| 0.2 | 1.3 | ST FAS SIGNALING PATHWAY | Fas Signaling Pathway |
| 0.3 | 0.7 | ST G ALPHA I PATHWAY | G alpha i Pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 0.7 | REACTOME PRE NOTCH EXPRESSION AND PROCESSING | Genes involved in Pre-NOTCH Expression and Processing |
| 0.2 | 0.7 | REACTOME NRAGE SIGNALS DEATH THROUGH JNK | Genes involved in NRAGE signals death through JNK |
| 0.0 | 0.3 | REACTOME BASE EXCISION REPAIR | Genes involved in Base Excision Repair |