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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT5G39820

Z-value: 0.62

Transcription factors associated with AT5G39820

Gene Symbol Gene ID Gene Info
AT5G39820
AT5G39820 NAC domain containing protein 94

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
NAC094arTal_v1_Chr5_-_15940590_159405900.058.7e-01Click!

Activity profile of AT5G39820 motif

Sorted Z-values of AT5G39820 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr1_+_28975255 2.51 AT1G77120.1
ADH1
alcohol dehydrogenase 1
Chr3_-_20576249 1.33 AT3G55500.1
EXPA16
expansin A16
Chr1_-_28442429 1.15 AT1G75750.2
AT1G75750.1
GASA1
GAST1 protein homolog 1
Chr4_-_16644928 1.01 AT4G34950.1
AT4G34950
Major facilitator superfamily protein
Chr5_+_23701392 0.92 AT5G58660.1
AT5G58660.2
AT5G58660
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr5_+_21771811 0.89 AT5G53590.1
AT5G53590
SAUR-like auxin-responsive protein family
Chr4_+_994726 0.80 AT4G02280.1
SUS3
sucrose synthase 3
Chr5_-_24741304 0.78 AT5G61520.2
AT5G61520.1
AT5G61520
Major facilitator superfamily protein
Chr3_-_6564424 0.77 AT3G19030.1
AT3G19030
transcription initiation factor TFIID subunit 1b-like protein
Chr1_-_28466971 0.77 AT1G75820.1
CLV1
Leucine-rich receptor-like protein kinase family protein
Chr1_-_30142697 0.72 AT1G80130.1
AT1G80130
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr3_-_9464676 0.62 AT3G25870.1
AT3G25870
hypothetical protein
Chr5_+_23098872 0.59 AT5G57080.1
AT5G57080
transmembrane protein
Chr4_-_10576619 0.58 AT4G19390.1
AT4G19390
Uncharacterized protein family (UPF0114)
Chr3_-_2394550 0.57 AT3G07510.2
AT3G07510.3
AT3G07510.1
AT3G07510
maternal effect embryo arrest protein
Chr4_-_712643 0.57 AT4G01670.1
AT4G01670
hypothetical protein
Chr1_-_30280359 0.56 AT1G80530.1
AT1G80530
Major facilitator superfamily protein
Chr4_+_6745100 0.53 AT4G11040.2
AT4G11040.1
AT4G11040
Protein phosphatase 2C family protein
Chr1_+_9259432 0.52 AT1G26770.1
EXPA10
expansin A10
Chr4_-_12400231 0.52 AT4G23820.1
AT4G23820
Pectin lyase-like superfamily protein
Chr2_-_521707 0.51 AT2G02080.4
AT2G02080.2
AT2G02080.5
AT2G02080.6
AT2G02080.3
AT2G02080.1
IDD4
indeterminate(ID)-domain 4
Chr1_+_18138169 0.50 AT1G49032.2
AT1G49032
hypothetical protein
Chr1_+_3611490 0.48 AT1G10850.1
AT1G10850
Leucine-rich repeat protein kinase family protein
Chr4_-_10577404 0.48 AT4G19390.2
AT4G19390
Uncharacterized protein family (UPF0114)
Chr1_+_9259750 0.48 AT1G26770.2
EXPA10
expansin A10
Chr5_-_24381599 0.47 AT5G60670.1
AT5G60670
Ribosomal protein L11 family protein
Chr4_+_11773221 0.46 AT4G22270.2
AT4G22270.1
MRB1
transmembrane protein, putative (DUF3537)
Chr1_+_18137977 0.46 AT1G49032.1
AT1G49032
hypothetical protein
Chr1_+_3157501 0.45 AT1G09750.1
AT1G09750
Eukaryotic aspartyl protease family protein
Chr2_+_17367492 0.45 AT2G41660.1
MIZ1
MIZU-KUSSEI-like protein (Protein of unknown function, DUF617)
Chr3_+_415389 0.44 AT3G02230.1
RGP1
reversibly glycosylated polypeptide 1
Chr4_-_717579 0.43 AT4G01680.3
AT4G01680.1
MYB55
myb domain protein 55
Chr4_-_10278794 0.43 AT4G18670.1
AT4G18670
Leucine-rich repeat (LRR) family protein
Chr1_+_2848149 0.42 AT1G08890.1
AT1G08890
Major facilitator superfamily protein
Chr1_-_10219942 0.42 AT1G29240.1
AT1G29240
transcription initiation factor TFIID subunit, putative (DUF688)
Chr4_-_18179183 0.42 AT4G39010.2
AT4G39010.1
GH9B18
glycosyl hydrolase 9B18
Chr1_+_24748105 0.41 AT1G66350.1
RGL1
RGA-like 1
Chr1_+_3901950 0.41 AT1G11600.1
CYP77B1
cytochrome P450, family 77, subfamily B, polypeptide 1
Chr2_-_13005600 0.40 AT2G30520.2
AT2G30520.3
AT2G30520.1
RPT2
Phototropic-responsive NPH3 family protein
Chr4_+_36916 0.40 AT4G00100.1
RPS13A
ribosomal protein S13A
Chr4_-_14733628 0.39 AT4G30120.1
HMA3
heavy metal atpase 3
Chr4_+_9472723 0.39 AT4G16835.1
AT4G16835
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr3_-_4493737 0.39 AT3G13700.2
AT3G13700.1
AT3G13710.1
AT3G13700
PRA1.F4
RNA-binding (RRM/RBD/RNP motifs) family protein
prenylated RAB acceptor 1.F4
Chr4_+_10142255 0.39 AT4G18350.1
NCED2
nine-cis-epoxycarotenoid dioxygenase 2
Chr3_+_20301759 0.38 AT3G54820.1
PIP2%3B5
plasma membrane intrinsic protein 2;5
Chr2_+_18677311 0.38 AT2G45300.4
AT2G45300.3
AT2G45300.2
AT2G45300.1
AT2G45300
RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta
Chr1_-_23262002 0.38 AT1G62810.1
CuAO1
Copper amine oxidase family protein
Chr2_-_9428170 0.38 AT2G22170.1
PLAT2
Lipase/lipooxygenase, PLAT/LH2 family protein
Chr4_-_14740742 0.38 AT4G30140.1
CDEF1
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr3_+_8603212 0.38 AT3G23820.1
GAE6
UDP-D-glucuronate 4-epimerase 6
Chr4_-_717415 0.38 AT4G01680.2
MYB55
myb domain protein 55
Chr4_-_947075 0.37 AT4G02130.2
AT4G02130.3
GATL6
galacturonosyltransferase 6
Chr1_+_7994262 0.37 AT1G22610.1
AT1G22610
C2 calcium/lipid-binding plant phosphoribosyltransferase family protein
Chr4_-_14733187 0.37 AT4G30120.2
HMA3
heavy metal atpase 3
Chr4_-_810574 0.36 AT4G01870.1
AT4G01870.2
AT4G01870
tolB protein-like protein
Chr2_+_18834011 0.36 AT2G45720.3
AT2G45720.2
AT2G45720.4
AT2G45720.5
AT2G45720
ARM repeat superfamily protein
Chr3_+_9989511 0.36 AT3G27090.1
AT3G27090.2
AT3G27090.3
AT3G27090
DCD (Development and Cell Death) domain protein
Chr5_+_25727126 0.36 AT5G64330.1
AT5G64330.2
AT5G64330.3
NPH3
Phototropic-responsive NPH3 family protein
Chr5_+_24003888 0.36 AT5G59570.1
AT5G59570.2
BOA
Homeodomain-like superfamily protein
Chr2_+_12487248 0.35 AT2G29070.2
AT2G29070.1
AT2G29070
Ubiquitin fusion degradation UFD1 family protein
Chr3_-_3427058 0.35 AT3G10960.1
AZG1
AZA-guanine resistant1
Chr1_-_28560436 0.35 AT1G76120.2
AT1G76120.1
AT1G76120
Pseudouridine synthase family protein
Chr1_+_14158452 0.35 AT1G37130.1
NIA2
nitrate reductase 2
Chr1_-_30129649 0.35 AT1G80080.1
TMM
Leucine-rich repeat (LRR) family protein
Chr3_-_4496800 0.34 AT3G13720.1
PRA8
PRA1 (Prenylated rab acceptor) family protein
Chr4_-_12068538 0.34 AT4G23020.2
AT4G23020.1
TRM11
hypothetical protein
Chr5_+_463073 0.34 AT5G02260.1
EXPA9
expansin A9
Chr1_-_29077390 0.34 AT1G77380.1
AAP3
amino acid permease 3
Chr3_-_1120933 0.33 AT3G04240.1
SEC
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr3_-_7452003 0.33 AT3G21230.4
AT3G21230.3
AT3G21230.2
AT3G21230.1
4CL5
4-coumarate:CoA ligase 5
Chr1_-_29643535 0.33 AT1G78850.1
AT1G78850
D-mannose binding lectin protein with Apple-like carbohydrate-binding domain-containing protein
Chr3_+_17987378 0.33 AT3G48530.1
KING1
SNF1-related protein kinase regulatory subunit gamma 1
Chr5_+_21910471 0.33 AT5G53970.1
TAT7
Tyrosine transaminase family protein
Chr3_+_23384988 0.33 AT3G63300.1
AT3G63300.2
FKD1
FORKED 1
Chr1_-_19101265 0.33 AT1G51500.1
ABCG12
ABC-2 type transporter family protein
Chr4_-_947249 0.32 AT4G02130.1
GATL6
galacturonosyltransferase 6
Chr3_+_8139185 0.32 AT3G22960.1
PKP-ALPHA
Pyruvate kinase family protein
Chr5_+_26732795 0.32 AT5G66950.1
AT5G66950
Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
Chr3_+_22670729 0.32 AT3G61250.1
MYB17
myb domain protein 17
Chr3_-_1119157 0.31 AT3G04240.2
SEC
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr2_+_10229350 0.31 AT2G24060.1
AT2G24060
Translation initiation factor 3 protein
Chr5_+_26253947 0.31 AT5G65670.2
IAA9
indole-3-acetic acid inducible 9
Chr5_+_26253408 0.31 AT5G65670.1
IAA9
indole-3-acetic acid inducible 9
Chr3_+_16745873 0.30 AT3G45620.1
AT3G45620.2
AT3G45620
Transducin/WD40 repeat-like superfamily protein
Chr3_-_7465283 0.30 AT3G21260.2
AT3G21260.1
GLTP3
Glycolipid transfer protein (GLTP) family protein
Chr1_+_4220044 0.30 AT1G12390.1
AT1G12390
Cornichon family protein
Chr4_+_16675377 0.30 AT4G35030.4
AT4G35030.3
AT4G35030.5
AT4G35030.6
AT4G35030.7
AT4G35030
Protein kinase superfamily protein
Chr3_+_6146015 0.30 AT3G17950.3
AT3G17950.1
AT3G17950.2
AT3G17950
transmembrane protein
Chr2_-_15789605 0.30 AT2G37640.2
EXP3
Barwin-like endoglucanases superfamily protein
Chr5_+_26596207 0.30 AT5G66631.1
AT5G66631
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr4_-_10714745 0.29 AT4G19700.1
RING
SBP (S-ribonuclease binding protein) family protein
Chr2_+_496045 0.29 AT2G02060.3
AT2G02060
Homeodomain-like superfamily protein
Chr5_+_25159208 0.29 AT5G62670.1
HA11
H[+]-ATPase 11
Chr2_-_15790139 0.29 AT2G37640.1
EXP3
Barwin-like endoglucanases superfamily protein
Chr5_-_26845294 0.29 AT5G67280.1
RLK
receptor-like kinase
Chr1_-_23286797 0.28 AT1G62870.1
AT1G62870
hypothetical protein
Chr2_-_17422747 0.28 AT2G41750.1
AT2G41750
DTW domain-containing protein
Chr3_+_4519631 0.28 AT3G13770.2
AT3G13770.1
AT3G13770
Pentatricopeptide repeat (PPR) superfamily protein
Chr5_-_10295283 0.28 AT5G28300.1
AT5G28300
Duplicated homeodomain-like superfamily protein
Chr1_+_3487547 0.27 AT1G10570.3
AT1G10570.1
OTS2
Cysteine proteinases superfamily protein
Chr4_-_853238 0.27 AT4G01960.3
AT4G01960.2
AT4G01960.1
AT4G01960
transmembrane protein
Chr5_-_21589255 0.27 AT5G53210.1
AT5G53210.2
SPCH
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr3_+_3883330 0.27 AT3G12180.1
AT3G12180
Cornichon family protein
Chr1_+_23850572 0.26 AT1G64270.1
AT1G64270

Chr3_+_9850531 0.26 AT3G26782.1
AT3G26782
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr3_+_10447845 0.26 AT3G28070.1
AT3G28070.4
AT3G28070.3
AT3G28070.2
AT3G28070.5
UMAMIT46
nodulin MtN21 /EamA-like transporter family protein
Chr2_+_495381 0.26 AT2G02060.1
AT2G02060
Homeodomain-like superfamily protein
Chr5_+_6430486 0.25 AT5G19160.2
AT5G19160.1
TBL11
TRICHOME BIREFRINGENCE-LIKE 11
Chr3_-_1272934 0.25 AT3G04680.3
AT3G04680.2
AT3G04680.1
CLPS3
CLP-similar protein 3
Chr2_+_12488503 0.25 AT2G29070.3
AT2G29070
Ubiquitin fusion degradation UFD1 family protein
Chr5_+_26854022 0.25 AT5G67300.1
MYBR1
myb domain protein r1
Chr5_-_5783729 0.25 AT5G17540.1
AT5G17540
HXXXD-type acyl-transferase family protein
Chr5_-_24153084 0.24 AT5G59990.2
AT5G59990.1
AT5G59990
CCT motif family protein
Chr1_-_29518028 0.24 AT1G78450.1
AT1G78450
SOUL heme-binding family protein
Chr1_-_10647650 0.24 AT1G30250.1
AT1G30250
hypothetical protein
Chr3_-_21312378 0.24 AT3G57560.1
NAGK
N-acetyl-l-glutamate kinase
Chr3_-_7465975 0.24 AT3G21260.3
GLTP3
Glycolipid transfer protein (GLTP) family protein
Chr1_+_30148330 0.23 AT1G80150.2
AT1G80150.1
AT1G80150
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr1_-_3278697 0.23 AT1G10040.2
AT1G10040.1
AT1G10040
alpha/beta-Hydrolases superfamily protein
Chr1_-_21614169 0.23 AT1G58270.1
ZW9
TRAF-like family protein
Chr3_+_9703525 0.23 AT3G26490.1
AT3G26490.2
AT3G26490.3
AT3G26490.4
AT3G26490
Phototropic-responsive NPH3 family protein
Chr2_-_12702443 0.23 AT2G29720.1
CTF2B
FAD/NAD(P)-binding oxidoreductase family protein
Chr5_+_15911350 0.23 AT5G39760.1
HB23
homeobox protein 23
Chr5_+_7226606 0.23 AT5G21482.1
CKX7
cytokinin oxidase 7
Chr3_-_18889980 0.23 AT3G50810.2
AT3G50810.1
AT3G50810
Uncharacterized protein family (UPF0497)
Chr4_+_15779911 0.22 AT4G32710.1
PERK14
Protein kinase superfamily protein
Chr4_-_16388719 0.22 AT4G34230.2
CAD5
cinnamyl alcohol dehydrogenase 5
Chr5_-_4842067 0.22 AT5G14950.1
GMII
golgi alpha-mannosidase II
Chr3_-_18451494 0.22 AT3G49750.2
RLP44
receptor like protein 44
Chr1_+_6765653 0.22 AT1G19540.2
AT1G19540.1
AT1G19540
NmrA-like negative transcriptional regulator family protein
Chr4_-_16388940 0.22 AT4G34230.1
CAD5
cinnamyl alcohol dehydrogenase 5
Chr1_-_28189765 0.22 AT1G75090.1
AT1G75090
DNA glycosylase superfamily protein
Chr4_+_9094402 0.22 AT4G16060.1
AT4G16060
hypothetical protein
Chr2_+_8964199 0.22 AT2G20820.1
AT2G20820.2
AT2G20820
hypothetical protein
Chr5_-_2130509 0.22 AT5G06850.1
FTIP1
C2 calcium/lipid-binding plant phosphoribosyltransferase family protein
Chr2_+_9942915 0.22 AT2G23350.1
PAB4
poly(A) binding protein 4
Chr3_+_14320943 0.21 AT3G42170.1
AT3G42170.2
DAYSLEEPER
BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER
Chr5_-_24990331 0.21 AT5G62220.1
GT18
glycosyltransferase 18
Chr5_+_8188166 0.21 AT5G24165.1
AT5G24165.2
AT5G24165
hypothetical protein
Chr1_-_21014018 0.21 AT1G56145.2
AT1G56145.1
AT1G56145
Leucine-rich repeat transmembrane protein kinase
Chr5_+_13634399 0.21 AT5G35410.1
AT5G35410.2
SOS2
Protein kinase superfamily protein
Chr1_-_30260732 0.21 AT1G80480.1
PTAC17
plastid transcriptionally active 17
Chr1_-_28318362 0.21 AT1G75450.1
AT1G75450.2
CKX5
cytokinin oxidase 5
Chr4_-_2352025 0.21 AT4G04640.1
ATPC1
ATPase, F1 complex, gamma subunit protein
Chr4_+_16676124 0.21 AT4G35030.1
AT4G35030.9
AT4G35030
Protein kinase superfamily protein
Chr2_-_394184 0.21 AT2G01880.1
PAP7
purple acid phosphatase 7
Chr1_+_28695760 0.21 AT1G76490.1
HMG1
hydroxy methylglutaryl CoA reductase 1
Chr1_+_25018077 0.20 AT1G67035.2
AT1G67035.1
AT1G67035
homeobox Hox-B3-like protein
Chr5_-_855904 0.20 AT5G03435.1
AT5G03435.2
AT5G03435
Ca2+dependent plant phosphoribosyltransferase family protein
Chr1_-_24822410 0.20 AT1G66530.1
AT1G66530
Arginyl-tRNA synthetase, class Ic
Chr3_+_10451403 0.20 AT3G28080.4
AT3G28080.3
AT3G28080.6
AT3G28080.7
AT3G28080.5
AT3G28080.1
AT3G28080.2
UMAMIT47
nodulin MtN21 /EamA-like transporter family protein
Chr2_+_494745 0.20 AT2G02060.2
AT2G02060
Homeodomain-like superfamily protein
Chr5_-_5006882 0.20 AT5G15410.1
AT5G15410.2
DND1
Cyclic nucleotide-regulated ion channel family protein
Chr2_+_18833086 0.20 AT2G45720.1
AT2G45720
ARM repeat superfamily protein
Chr3_+_9887917 0.20 AT3G26830.1
PAD3
Cytochrome P450 superfamily protein
Chr5_-_3242266 0.19 AT5G10310.2
AT5G10310.1
AT5G10310
EPIDERMAL PATTERNING FACTOR-like protein
Chr2_+_18792864 0.19 AT2G45620.1
AT2G45620
Nucleotidyltransferase family protein
Chr1_+_19041397 0.19 AT1G51355.1
AT1G51355
cyclin-dependent kinase inhibitor SMR3-like protein
Chr3_-_2864262 0.19 AT3G09320.1
AT3G09320
DHHC-type zinc finger family protein
Chr3_+_23054004 0.19 AT3G62300.2
AT3G62300.1
DUF7
agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 7)
Chr1_+_7835781 0.19 AT1G22190.1
AT1G22190
Integrase-type DNA-binding superfamily protein
Chr3_-_18451659 0.19 AT3G49750.1
RLP44
receptor like protein 44
Chr5_+_17798262 0.19 AT5G44190.2
AT5G44190.1
GLK2
GOLDEN2-like 2
Chr5_-_15470724 0.19 AT5G38640.1
AT5G38640
NagB/RpiA/CoA transferase-like superfamily protein
Chr1_+_3487386 0.19 AT1G10570.2
OTS2
Cysteine proteinases superfamily protein
Chr1_+_7090941 0.19 AT1G20460.1
AT1G20460
NADH-ubiquinone oxidoreductase chain
Chr4_+_17400610 0.18 AT4G36920.2
AT4G36920.1
AP2
Integrase-type DNA-binding superfamily protein
Chr3_+_9396272 0.18 AT3G25730.1
EDF3
ethylene response DNA binding factor 3
Chr4_-_15991536 0.18 AT4G33150.1
AT4G33150.2
AT4G33150
lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme
Chr1_-_8659514 0.18 AT1G24430.1
AT1G24430
HXXXD-type acyl-transferase family protein
Chr5_-_17373221 0.18 AT5G43290.1
WRKY49
WRKY DNA-binding protein 49
Chr3_+_19450506 0.18 AT3G52470.1
AT3G52470
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Chr5_-_17941646 0.18 AT5G44540.1
AT5G44540
Tapetum specific protein TAP35/TAP44
Chr3_+_10318455 0.18 AT3G27830.1
AT3G27830.2
RPL12-A
ribosomal protein L12-A
Chr3_-_5327639 0.18 AT3G15720.2
AT3G15720.3
AT3G15720.1
AT3G15720
Pectin lyase-like superfamily protein
Chr2_-_18197767 0.17 AT2G43940.1
HOL3
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr5_-_5766246 0.17 AT5G17490.1
RGL3
RGA-like protein 3
Chr5_-_1302477 0.17 AT5G04540.1
MTM2
Myotubularin-like phosphatases II superfamily
Chr1_-_21013766 0.17 AT1G56145.3
AT1G56145
Leucine-rich repeat transmembrane protein kinase
Chr5_+_16646157 0.17 AT5G41620.3
AT5G41620.1
AT5G41620.2
AT5G41620.4
AT5G41620
intracellular protein transporter USO1-like protein
Chr4_-_16491054 0.17 AT4G34500.1
AT4G34500
Protein kinase superfamily protein
Chr3_+_1936050 0.16 AT3G06380.2
AT3G06380.1
TLP9
tubby-like protein 9
Chr4_-_7486829 0.16 AT4G12710.1
AT4G12710
ARM repeat superfamily protein
Chr2_-_13968957 0.16 AT2G32930.2
AT2G32930.1
ZFN2
zinc finger nuclease 2
Chr1_-_25442876 0.16 AT1G67855.1
AT1G67855
hypothetical protein
Chr5_-_24415145 0.16 AT5G60710.1
AT5G60710
Zinc finger (C3HC4-type RING finger) family protein
Chr5_+_21865268 0.16 AT5G53860.1
AT5G53860.4
AT5G53860.3
AT5G53860.5
emb2737
embryo defective 2737
Chr4_-_15429113 0.16 AT4G31890.2
AT4G31890.1
AT4G31890.3
AT4G31890
ARM repeat superfamily protein
Chr1_+_28174187 0.16 AT1G75030.1
TLP-3
thaumatin-like protein 3
Chr1_+_20048434 0.16 AT1G53700.1
WAG1
WAG 1
Chr1_-_20838778 0.16 AT1G55740.1
SIP1
seed imbibition 1
Chr3_-_3094945 0.15 AT3G10030.2
AT3G10030.1
AT3G10030
aspartate/glutamate/uridylate kinase family protein
Chr5_-_26728715 0.15 AT5G66940.1
AT5G66940
Dof-type zinc finger DNA-binding family protein
Chr2_-_16690182 0.15 AT2G39980.1
AT2G39980
HXXXD-type acyl-transferase family protein
Chr5_-_26150342 0.15 AT5G65430.2
AT5G65430.3
AT5G65430.1
GRF8
general regulatory factor 8
Chr5_-_26190591 0.15 AT5G65520.1
AT5G65520
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr5_+_17814244 0.15 AT5G44230.2
AT5G44230.1
AT5G44230
Pentatricopeptide repeat (PPR) superfamily protein
Chr3_-_2334185 0.15 AT3G07320.1
AT3G07320
O-Glycosyl hydrolases family 17 protein
Chr2_-_14122190 0.15 AT2G33320.1
AT2G33320
Calcium-dependent lipid-binding (CaLB domain) family protein
Chr1_+_23769774 0.15 AT1G64060.1
RBOH F
respiratory burst oxidase protein F

Network of associatons between targets according to the STRING database.

First level regulatory network of AT5G39820

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.5 2.5 GO:0043279 response to caffeine(GO:0031000) response to alkaloid(GO:0043279)
0.2 0.6 GO:0006493 protein O-linked glycosylation(GO:0006493)
0.1 0.7 GO:0006809 nitric oxide biosynthetic process(GO:0006809)
0.1 2.2 GO:0006949 syncytium formation(GO:0006949)
0.1 0.3 GO:0015802 basic amino acid transport(GO:0015802)
0.1 0.5 GO:0035627 ceramide transport(GO:0035627)
0.1 0.4 GO:0019586 uronic acid metabolic process(GO:0006063) galacturonate metabolic process(GO:0019586)
0.1 0.3 GO:0090547 response to low humidity(GO:0090547)
0.1 0.4 GO:0015854 adenine transport(GO:0015853) guanine transport(GO:0015854)
0.1 0.8 GO:0010098 suspensor development(GO:0010098)
0.1 0.2 GO:0001173 DNA-templated transcriptional start site selection(GO:0001173)
0.1 0.4 GO:0009823 cytokinin catabolic process(GO:0009823) hormone catabolic process(GO:0042447)
0.1 0.3 GO:1990481 mRNA pseudouridine synthesis(GO:1990481)
0.1 0.8 GO:0071585 detoxification of cadmium ion(GO:0071585)
0.1 0.3 GO:0010376 stomatal complex formation(GO:0010376)
0.1 0.2 GO:0006420 arginyl-tRNA aminoacylation(GO:0006420)
0.1 0.2 GO:0042450 arginine biosynthetic process via ornithine(GO:0042450)
0.1 0.3 GO:0006517 protein deglycosylation(GO:0006517)
0.1 0.5 GO:0016926 protein desumoylation(GO:0016926)
0.1 0.2 GO:0006059 hexitol metabolic process(GO:0006059) hexitol biosynthetic process(GO:0019406) mannitol biosynthetic process(GO:0019593) mannitol metabolic process(GO:0019594)
0.1 0.6 GO:0071712 ER-associated misfolded protein catabolic process(GO:0071712)
0.0 0.2 GO:0070509 calcium ion import(GO:0070509)
0.0 0.2 GO:0006569 tryptophan catabolic process(GO:0006569) indolalkylamine catabolic process(GO:0046218)
0.0 0.1 GO:1990532 stress response to nickel ion(GO:1990532)
0.0 0.1 GO:0010599 production of lsiRNA involved in RNA interference(GO:0010599)
0.0 0.1 GO:0070537 histone H2A K63-linked deubiquitination(GO:0070537)
0.0 0.2 GO:0009188 UDP biosynthetic process(GO:0006225) ribonucleoside diphosphate biosynthetic process(GO:0009188) pyrimidine ribonucleoside diphosphate metabolic process(GO:0009193) pyrimidine ribonucleoside diphosphate biosynthetic process(GO:0009194) UDP metabolic process(GO:0046048)
0.0 0.4 GO:0010047 fruit dehiscence(GO:0010047)
0.0 0.1 GO:1900459 positive regulation of brassinosteroid mediated signaling pathway(GO:1900459)
0.0 0.2 GO:0010929 positive regulation of auxin mediated signaling pathway(GO:0010929)
0.0 0.1 GO:0080093 regulation of photorespiration(GO:0080093)
0.0 0.4 GO:0009423 chorismate biosynthetic process(GO:0009423)
0.0 0.6 GO:0009938 negative regulation of gibberellic acid mediated signaling pathway(GO:0009938)
0.0 0.3 GO:0010189 vitamin E biosynthetic process(GO:0010189) vitamin E metabolic process(GO:0042360)
0.0 0.3 GO:0016121 carotene catabolic process(GO:0016121) terpene catabolic process(GO:0046247)
0.0 0.1 GO:0015812 gamma-aminobutyric acid transport(GO:0015812)
0.0 0.2 GO:0009772 photosynthetic electron transport in photosystem II(GO:0009772)
0.0 0.1 GO:0045730 respiratory burst involved in defense response(GO:0002679) respiratory burst(GO:0045730)
0.0 0.3 GO:0010951 negative regulation of endopeptidase activity(GO:0010951) regulation of endopeptidase activity(GO:0052548)
0.0 0.4 GO:0010274 hydrotropism(GO:0010274)
0.0 0.1 GO:0042178 xenobiotic catabolic process(GO:0042178)
0.0 0.4 GO:0033356 UDP-L-arabinose metabolic process(GO:0033356)
0.0 0.6 GO:0009934 regulation of meristem structural organization(GO:0009934)
0.0 0.2 GO:0019287 isopentenyl diphosphate biosynthetic process, mevalonate pathway(GO:0019287)
0.0 0.6 GO:0009638 phototropism(GO:0009638)
0.0 0.2 GO:0010120 camalexin biosynthetic process(GO:0010120) camalexin metabolic process(GO:0052317)
0.0 0.1 GO:1903428 photosynthesis, light harvesting in photosystem II(GO:0009769) positive regulation of reactive oxygen species biosynthetic process(GO:1903428)
0.0 0.5 GO:0008356 asymmetric cell division(GO:0008356)
0.0 0.3 GO:0018231 peptidyl-L-cysteine S-palmitoylation(GO:0018230) peptidyl-S-diacylglycerol-L-cysteine biosynthetic process from peptidyl-cysteine(GO:0018231)
0.0 0.1 GO:0080142 regulation of salicylic acid biosynthetic process(GO:0080142)
0.0 0.3 GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation(GO:0006388)
0.0 0.5 GO:0035265 organ growth(GO:0035265)
0.0 0.7 GO:0045489 pectin biosynthetic process(GO:0045489)
0.0 0.2 GO:1900056 negative regulation of leaf senescence(GO:1900056)
0.0 0.1 GO:0007142 male meiosis II(GO:0007142)
0.0 0.4 GO:0010305 leaf vascular tissue pattern formation(GO:0010305)
0.0 0.3 GO:0009828 plant-type cell wall loosening(GO:0009828)
0.0 0.2 GO:0048829 root cap development(GO:0048829)
0.0 0.4 GO:0005992 trehalose biosynthetic process(GO:0005992)
0.0 0.2 GO:0009969 xyloglucan biosynthetic process(GO:0009969)
0.0 1.1 GO:0009741 response to brassinosteroid(GO:0009741)
0.0 0.2 GO:0010093 specification of floral organ identity(GO:0010093)
0.0 0.1 GO:0032544 plastid translation(GO:0032544)
0.0 0.1 GO:0045898 regulation of RNA polymerase II transcriptional preinitiation complex assembly(GO:0045898) positive regulation of RNA polymerase II transcriptional preinitiation complex assembly(GO:0045899)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.6 GO:0034098 VCP-NPL4-UFD1 AAA ATPase complex(GO:0034098)
0.1 0.4 GO:0032541 cortical endoplasmic reticulum(GO:0032541)
0.0 0.1 GO:0009501 amyloplast(GO:0009501)
0.0 0.2 GO:0000311 plastid large ribosomal subunit(GO:0000311)
0.0 0.1 GO:0005942 phosphatidylinositol 3-kinase complex(GO:0005942) phosphatidylinositol 3-kinase complex, class III, type I(GO:0034271) phosphatidylinositol 3-kinase complex, class III, type II(GO:0034272) phosphatidylinositol 3-kinase complex, class III(GO:0035032)
0.0 0.1 GO:0035145 exon-exon junction complex(GO:0035145)
0.0 0.2 GO:0000275 mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)(GO:0000275)
0.0 0.1 GO:0070552 BRISC complex(GO:0070552)
0.0 0.0 GO:0017059 palmitoyltransferase complex(GO:0002178) serine C-palmitoyltransferase complex(GO:0017059) endoplasmic reticulum palmitoyltransferase complex(GO:0031211)
0.0 0.1 GO:0009503 thylakoid light-harvesting complex(GO:0009503) PSII associated light-harvesting complex II(GO:0009517) light-harvesting complex(GO:0030076)
0.0 0.2 GO:0009508 plastid chromosome(GO:0009508)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 2.5 GO:0004024 alcohol dehydrogenase activity, zinc-dependent(GO:0004024)
0.2 0.6 GO:0097363 protein O-GlcNAc transferase activity(GO:0097363)
0.1 0.3 GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors(GO:0016661)
0.1 0.5 GO:0070140 ubiquitin-like protein-specific isopeptidase activity(GO:0070138) SUMO-specific isopeptidase activity(GO:0070140)
0.1 0.5 GO:0035620 ceramide transporter activity(GO:0035620) sphingolipid transporter activity(GO:0046624) ceramide 1-phosphate binding(GO:1902387) ceramide 1-phosphate transporter activity(GO:1902388)
0.1 0.4 GO:0052593 tryptamine:oxygen oxidoreductase (deaminating) activity(GO:0052593) aminoacetone:oxygen oxidoreductase(deaminating) activity(GO:0052594) aliphatic-amine oxidase activity(GO:0052595) phenethylamine:oxygen oxidoreductase (deaminating) activity(GO:0052596)
0.1 0.3 GO:0001130 bacterial-type RNA polymerase transcription factor activity, sequence-specific DNA binding(GO:0001130) bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding(GO:0001216)
0.1 0.4 GO:0052691 UDP-arabinopyranose mutase activity(GO:0052691)
0.1 0.2 GO:0004814 arginine-tRNA ligase activity(GO:0004814)
0.1 0.4 GO:0050378 UDP-glucuronate 4-epimerase activity(GO:0050378)
0.1 0.4 GO:0019139 cytokinin dehydrogenase activity(GO:0019139)
0.1 0.2 GO:0004438 phosphatidylinositol-3-phosphatase activity(GO:0004438) phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity(GO:0052629)
0.1 0.2 GO:0015924 mannosyl-oligosaccharide mannosidase activity(GO:0015924)
0.1 0.3 GO:0070547 L-tyrosine:2-oxoglutarate aminotransferase activity(GO:0004838) L-tyrosine aminotransferase activity(GO:0070547)
0.1 1.1 GO:0005199 structural constituent of cell wall(GO:0005199)
0.1 0.3 GO:0051731 polynucleotide 5'-hydroxyl-kinase activity(GO:0051731)
0.0 0.8 GO:0016157 sucrose synthase activity(GO:0016157)
0.0 0.4 GO:0004096 catalase activity(GO:0004096)
0.0 0.3 GO:0045549 9-cis-epoxycarotenoid dioxygenase activity(GO:0045549)
0.0 0.2 GO:0033862 UMP kinase activity(GO:0033862)
0.0 0.3 GO:0016423 tRNA (guanine) methyltransferase activity(GO:0016423)
0.0 0.1 GO:0004048 anthranilate phosphoribosyltransferase activity(GO:0004048)
0.0 0.7 GO:0015086 cadmium ion transmembrane transporter activity(GO:0015086)
0.0 0.4 GO:0052747 sinapyl alcohol dehydrogenase activity(GO:0052747)
0.0 0.1 GO:0004563 beta-N-acetylhexosaminidase activity(GO:0004563)
0.0 0.4 GO:0070181 small ribosomal subunit rRNA binding(GO:0070181)
0.0 0.1 GO:0015185 L-alanine transmembrane transporter activity(GO:0015180) gamma-aminobutyric acid transmembrane transporter activity(GO:0015185) alanine transmembrane transporter activity(GO:0022858)
0.0 0.1 GO:0016174 NAD(P)H oxidase activity(GO:0016174) oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor(GO:0050664)
0.0 0.2 GO:0018708 thiol S-methyltransferase activity(GO:0018708)
0.0 0.2 GO:0005221 intracellular cyclic nucleotide activated cation channel activity(GO:0005221) cyclic nucleotide-gated ion channel activity(GO:0043855)
0.0 0.2 GO:0010328 auxin influx transmembrane transporter activity(GO:0010328)
0.0 0.5 GO:0009982 pseudouridine synthase activity(GO:0009982)
0.0 0.7 GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262)
0.0 0.3 GO:0016207 4-coumarate-CoA ligase activity(GO:0016207)
0.0 0.7 GO:0031593 polyubiquitin binding(GO:0031593)
0.0 0.2 GO:0047274 galactinol-sucrose galactosyltransferase activity(GO:0047274)
0.0 0.3 GO:0004743 pyruvate kinase activity(GO:0004743) potassium ion binding(GO:0030955) alkali metal ion binding(GO:0031420)
0.0 0.1 GO:0045431 flavonol synthase activity(GO:0045431)
0.0 0.2 GO:0008725 alkylbase DNA N-glycosylase activity(GO:0003905) DNA-3-methyladenine glycosylase activity(GO:0008725) DNA-3-methylbase glycosylase activity(GO:0043733)
0.0 0.1 GO:0016621 cinnamoyl-CoA reductase activity(GO:0016621)
0.0 0.2 GO:0008199 ferric iron binding(GO:0008199)
0.0 0.2 GO:0016774 phosphotransferase activity, carboxyl group as acceptor(GO:0016774)
0.0 0.3 GO:0019706 protein-cysteine S-palmitoyltransferase activity(GO:0019706) protein-cysteine S-acyltransferase activity(GO:0019707)
0.0 0.2 GO:0003730 mRNA 3'-UTR binding(GO:0003730)
0.0 0.8 GO:0033612 receptor serine/threonine kinase binding(GO:0033612)
0.0 0.4 GO:0004805 trehalose-phosphatase activity(GO:0004805)
0.0 1.0 GO:0004650 polygalacturonase activity(GO:0004650)
0.0 0.1 GO:0034979 NAD-dependent histone deacetylase activity(GO:0017136) histone deacetylase activity (H3-K14 specific)(GO:0031078) NAD-dependent histone deacetylase activity (H3-K14 specific)(GO:0032041) NAD-dependent protein deacetylase activity(GO:0034979)
0.0 0.4 GO:0005345 purine nucleobase transmembrane transporter activity(GO:0005345)
0.0 0.3 GO:0015562 efflux transmembrane transporter activity(GO:0015562)
0.0 1.2 GO:0015144 carbohydrate transmembrane transporter activity(GO:0015144)
0.0 0.1 GO:0030060 L-malate dehydrogenase activity(GO:0030060)
0.0 0.3 GO:0008810 cellulase activity(GO:0008810)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 SIG PIP3 SIGNALING IN CARDIAC MYOCTES Genes related to PIP3 signaling in cardiac myocytes
0.0 0.1 PID ARF6 DOWNSTREAM PATHWAY Arf6 downstream pathway

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 REACTOME NRAGE SIGNALS DEATH THROUGH JNK Genes involved in NRAGE signals death through JNK
0.0 0.1 REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES Genes involved in Chemokine receptors bind chemokines