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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT5G39820
Z-value: 0.62
Transcription factors associated with AT5G39820
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G39820
|
AT5G39820 | NAC domain containing protein 94 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| NAC094 | arTal_v1_Chr5_-_15940590_15940590 | 0.05 | 8.7e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_+_28975255_28975255 Show fit | 2.51 |
AT1G77120.1
|
alcohol dehydrogenase 1 |
|
| arTal_v1_Chr3_-_20576249_20576249 Show fit | 1.33 |
AT3G55500.1
|
expansin A16 |
|
| arTal_v1_Chr1_-_28442429_28442435 Show fit | 1.15 |
AT1G75750.2
AT1G75750.1 |
GAST1 protein homolog 1 |
|
| arTal_v1_Chr4_-_16644928_16644928 Show fit | 1.01 |
AT4G34950.1
|
Major facilitator superfamily protein |
|
| arTal_v1_Chr5_+_23701392_23701392 Show fit | 0.92 |
AT5G58660.1
AT5G58660.2 |
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
|
| arTal_v1_Chr5_+_21771811_21771811 Show fit | 0.89 |
AT5G53590.1
|
SAUR-like auxin-responsive protein family |
|
| arTal_v1_Chr4_+_994726_994726 Show fit | 0.80 |
AT4G02280.1
|
sucrose synthase 3 |
|
| arTal_v1_Chr5_-_24741304_24741401 Show fit | 0.78 |
AT5G61520.2
AT5G61520.1 |
Major facilitator superfamily protein |
|
| arTal_v1_Chr3_-_6564424_6564424 Show fit | 0.77 |
AT3G19030.1
|
transcription initiation factor TFIID subunit 1b-like protein |
|
| arTal_v1_Chr1_-_28466971_28466971 Show fit | 0.77 |
AT1G75820.1
|
Leucine-rich receptor-like protein kinase family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G39820
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 2.5 | GO:0043279 | response to caffeine(GO:0031000) response to alkaloid(GO:0043279) |
| 0.1 | 2.2 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.0 | 1.1 | GO:0009741 | response to brassinosteroid(GO:0009741) |
| 0.1 | 0.8 | GO:0010098 | suspensor development(GO:0010098) |
| 0.1 | 0.8 | GO:0071585 | detoxification of cadmium ion(GO:0071585) |
| 0.1 | 0.7 | GO:0006809 | nitric oxide biosynthetic process(GO:0006809) |
| 0.0 | 0.7 | GO:0045489 | pectin biosynthetic process(GO:0045489) |
| 0.2 | 0.6 | GO:0006493 | protein O-linked glycosylation(GO:0006493) |
| 0.1 | 0.6 | GO:0071712 | ER-associated misfolded protein catabolic process(GO:0071712) |
| 0.0 | 0.6 | GO:0009938 | negative regulation of gibberellic acid mediated signaling pathway(GO:0009938) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.6 | GO:0034098 | VCP-NPL4-UFD1 AAA ATPase complex(GO:0034098) |
| 0.1 | 0.4 | GO:0032541 | cortical endoplasmic reticulum(GO:0032541) |
| 0.0 | 0.2 | GO:0000311 | plastid large ribosomal subunit(GO:0000311) |
| 0.0 | 0.2 | GO:0000275 | mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)(GO:0000275) |
| 0.0 | 0.2 | GO:0009508 | plastid chromosome(GO:0009508) |
| 0.0 | 0.1 | GO:0009501 | amyloplast(GO:0009501) |
| 0.0 | 0.1 | GO:0005942 | phosphatidylinositol 3-kinase complex(GO:0005942) phosphatidylinositol 3-kinase complex, class III, type I(GO:0034271) phosphatidylinositol 3-kinase complex, class III, type II(GO:0034272) phosphatidylinositol 3-kinase complex, class III(GO:0035032) |
| 0.0 | 0.1 | GO:0035145 | exon-exon junction complex(GO:0035145) |
| 0.0 | 0.1 | GO:0070552 | BRISC complex(GO:0070552) |
| 0.0 | 0.1 | GO:0009503 | thylakoid light-harvesting complex(GO:0009503) PSII associated light-harvesting complex II(GO:0009517) light-harvesting complex(GO:0030076) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 2.5 | GO:0004024 | alcohol dehydrogenase activity, zinc-dependent(GO:0004024) |
| 0.0 | 1.2 | GO:0015144 | carbohydrate transmembrane transporter activity(GO:0015144) |
| 0.1 | 1.1 | GO:0005199 | structural constituent of cell wall(GO:0005199) |
| 0.0 | 1.0 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.0 | 0.8 | GO:0016157 | sucrose synthase activity(GO:0016157) |
| 0.0 | 0.8 | GO:0033612 | receptor serine/threonine kinase binding(GO:0033612) |
| 0.0 | 0.7 | GO:0015086 | cadmium ion transmembrane transporter activity(GO:0015086) |
| 0.0 | 0.7 | GO:0047262 | polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262) |
| 0.0 | 0.7 | GO:0031593 | polyubiquitin binding(GO:0031593) |
| 0.2 | 0.6 | GO:0097363 | protein O-GlcNAc transferase activity(GO:0097363) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.2 | SIG PIP3 SIGNALING IN CARDIAC MYOCTES | Genes related to PIP3 signaling in cardiac myocytes |
| 0.0 | 0.1 | PID ARF6 DOWNSTREAM PATHWAY | Arf6 downstream pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.2 | REACTOME NRAGE SIGNALS DEATH THROUGH JNK | Genes involved in NRAGE signals death through JNK |
| 0.0 | 0.1 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |