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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT5G26170
Z-value: 1.43
Transcription factors associated with AT5G26170
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G26170
|
AT5G26170 | WRKY DNA-binding protein 50 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| WRKY50 | arTal_v1_Chr5_-_9148391_9148391 | 0.29 | 3.1e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_+_28053030_28053030 Show fit | 1.61 |
AT1G74670.1
|
Gibberellin-regulated family protein |
|
| arTal_v1_Chr2_-_1339468_1339468 Show fit | 1.48 |
AT2G04050.1
|
MATE efflux family protein |
|
| arTal_v1_Chr3_-_18375784_18375784 Show fit | 1.46 |
AT3G49580.3
AT3G49580.2 |
response to low sulfur 1 |
|
| arTal_v1_Chr3_-_18375940_18375940 Show fit | 1.38 |
AT3G49580.1
|
response to low sulfur 1 |
|
| arTal_v1_Chr2_+_18347765_18347765 Show fit | 1.38 |
AT2G44460.2
|
beta glucosidase 28 |
|
| arTal_v1_Chr2_+_18346306_18346306 Show fit | 1.32 |
AT2G44460.1
|
beta glucosidase 28 |
|
| arTal_v1_Chr5_-_19807853_19807853 Show fit | 1.27 |
AT5G48850.1
|
Tetratricopeptide repeat (TPR)-like superfamily protein |
|
| arTal_v1_Chr2_+_17409370_17409370 Show fit | 1.26 |
AT2G41730.1
|
calcium-binding site protein |
|
| arTal_v1_Chr4_+_11150049_11150049 Show fit | 1.25 |
AT4G20820.1
|
FAD-binding Berberine family protein |
|
| arTal_v1_Chr5_-_9164816_9164884 Show fit | 1.15 |
AT5G26220.2
AT5G26220.1 |
ChaC-like family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G26170
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 11.3 | GO:0010200 | response to chitin(GO:0010200) |
| 0.1 | 7.3 | GO:0009816 | defense response to bacterium, incompatible interaction(GO:0009816) |
| 0.6 | 5.5 | GO:0009652 | thigmotropism(GO:0009652) |
| 0.7 | 4.7 | GO:0010438 | cellular response to sulfur starvation(GO:0010438) |
| 0.0 | 4.3 | GO:0009751 | response to salicylic acid(GO:0009751) |
| 0.1 | 3.9 | GO:0009718 | anthocyanin-containing compound biosynthetic process(GO:0009718) |
| 0.0 | 3.6 | GO:0046777 | protein autophosphorylation(GO:0046777) |
| 0.1 | 3.4 | GO:0007166 | cell surface receptor signaling pathway(GO:0007166) |
| 0.1 | 2.9 | GO:0010193 | response to ozone(GO:0010193) |
| 0.3 | 2.8 | GO:0009061 | anaerobic respiration(GO:0009061) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 6.6 | GO:0009534 | chloroplast thylakoid(GO:0009534) |
| 0.0 | 5.7 | GO:0009532 | plastid stroma(GO:0009532) |
| 0.0 | 5.3 | GO:0042579 | peroxisome(GO:0005777) microbody(GO:0042579) |
| 0.0 | 4.3 | GO:0000790 | nuclear chromatin(GO:0000790) |
| 0.1 | 3.3 | GO:0010319 | stromule(GO:0010319) |
| 0.0 | 2.7 | GO:0099503 | secretory vesicle(GO:0099503) |
| 0.0 | 2.6 | GO:0005875 | microtubule associated complex(GO:0005875) |
| 0.0 | 1.9 | GO:0000325 | plant-type vacuole(GO:0000325) |
| 0.1 | 1.7 | GO:0098807 | chloroplast thylakoid membrane protein complex(GO:0098807) |
| 0.0 | 1.6 | GO:0033647 | host(GO:0018995) host cell part(GO:0033643) host intracellular part(GO:0033646) host intracellular organelle(GO:0033647) host intracellular membrane-bounded organelle(GO:0033648) host cell nucleus(GO:0042025) intracellular region of host(GO:0043656) host cell(GO:0043657) other organism(GO:0044215) other organism cell(GO:0044216) other organism part(GO:0044217) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 11.9 | GO:0043531 | ADP binding(GO:0043531) |
| 0.0 | 9.5 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 0.0 | 8.1 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
| 0.0 | 6.6 | GO:0005516 | calmodulin binding(GO:0005516) |
| 0.1 | 4.5 | GO:0050135 | NAD(P)+ nucleosidase activity(GO:0050135) |
| 0.0 | 4.2 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.1 | 3.6 | GO:0030247 | pattern binding(GO:0001871) polysaccharide binding(GO:0030247) |
| 0.0 | 3.5 | GO:0005506 | iron ion binding(GO:0005506) |
| 0.1 | 3.2 | GO:0102483 | scopolin beta-glucosidase activity(GO:0102483) |
| 0.0 | 2.6 | GO:0051015 | actin filament binding(GO:0051015) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.2 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.1 | 1.0 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.1 | 0.9 | SIG INSULIN RECEPTOR PATHWAY IN CARDIAC MYOCYTES | Genes related to the insulin receptor pathway |
| 0.2 | 0.5 | PID VEGFR1 PATHWAY | VEGFR1 specific signals |
| 0.1 | 0.4 | PID ATM PATHWAY | ATM pathway |
| 0.1 | 0.4 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.0 | 0.4 | PID E2F PATHWAY | E2F transcription factor network |
| 0.1 | 0.3 | PID ATF2 PATHWAY | ATF-2 transcription factor network |
| 0.2 | 0.2 | PID REELIN PATHWAY | Reelin signaling pathway |
| 0.1 | 0.2 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 1.9 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.1 | 1.7 | REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX | Genes involved in Formation of the ternary complex, and subsequently, the 43S complex |
| 0.1 | 1.2 | REACTOME PPARA ACTIVATES GENE EXPRESSION | Genes involved in PPARA Activates Gene Expression |
| 0.2 | 0.9 | REACTOME BILE ACID AND BILE SALT METABOLISM | Genes involved in Bile acid and bile salt metabolism |
| 0.1 | 0.8 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
| 0.2 | 0.6 | REACTOME GLUTATHIONE CONJUGATION | Genes involved in Glutathione conjugation |
| 0.2 | 0.5 | REACTOME SEMAPHORIN INTERACTIONS | Genes involved in Semaphorin interactions |
| 0.2 | 0.5 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
| 0.1 | 0.5 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
| 0.1 | 0.5 | REACTOME MITOTIC PROMETAPHASE | Genes involved in Mitotic Prometaphase |