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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT5G25810
Z-value: 0.97
Transcription factors associated with AT5G25810
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G25810
|
AT5G25810 | Integrase-type DNA-binding superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| tny | arTal_v1_Chr5_-_8987898_8987898 | 0.58 | 3.0e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_-_19036938_19036938 Show fit | 1.64 |
AT5G46890.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr3_-_8589754_8589754 Show fit | 1.56 |
AT3G23810.1
|
S-adenosyl-l-homocysteine (SAH) hydrolase 2 |
|
| arTal_v1_Chr5_-_19040456_19040456 Show fit | 1.48 |
AT5G46900.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr3_-_1758807_1758807 Show fit | 1.47 |
AT3G05890.1
|
Low temperature and salt responsive protein family |
|
| arTal_v1_Chr5_-_3172701_3172701 Show fit | 1.27 |
AT5G10130.1
|
Pollen Ole e 1 allergen and extensin family protein |
|
| arTal_v1_Chr2_+_9592956_9592956 Show fit | 0.94 |
AT2G22590.1
|
UDP-Glycosyltransferase superfamily protein |
|
| arTal_v1_Chr4_-_7493080_7493080 Show fit | 0.91 |
AT4G12730.1
|
FASCICLIN-like arabinogalactan 2 |
|
| arTal_v1_Chr4_-_14002069_14002124 Show fit | 0.89 |
AT4G28250.2
AT4G28250.3 AT4G28250.4 AT4G28250.1 |
expansin B3 |
|
| arTal_v1_Chr1_+_7911843_7911843 Show fit | 0.87 |
AT1G22410.1
|
Class-II DAHP synthetase family protein |
|
| arTal_v1_Chr5_+_6826365_6826365 Show fit | 0.87 |
AT5G20230.1
|
blue-copper-binding protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G25810
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 2.3 | GO:0045492 | xylan biosynthetic process(GO:0045492) |
| 0.1 | 2.0 | GO:0006022 | aminoglycan metabolic process(GO:0006022) aminoglycan catabolic process(GO:0006026) chitin metabolic process(GO:0006030) chitin catabolic process(GO:0006032) amino sugar catabolic process(GO:0046348) glucosamine-containing compound catabolic process(GO:1901072) |
| 0.0 | 1.8 | GO:0009834 | plant-type secondary cell wall biogenesis(GO:0009834) |
| 0.4 | 1.6 | GO:0033353 | S-adenosylmethionine cycle(GO:0033353) S-adenosylhomocysteine metabolic process(GO:0046498) |
| 0.1 | 1.5 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.0 | 1.4 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.3 | 1.3 | GO:0006556 | S-adenosylmethionine biosynthetic process(GO:0006556) |
| 0.0 | 1.3 | GO:0042026 | protein refolding(GO:0042026) |
| 0.1 | 1.2 | GO:0031408 | oxylipin biosynthetic process(GO:0031408) |
| 0.3 | 1.1 | GO:0046475 | glycerophospholipid catabolic process(GO:0046475) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 9.9 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.0 | 6.0 | GO:0048046 | apoplast(GO:0048046) |
| 0.0 | 4.2 | GO:0030312 | cell wall(GO:0005618) external encapsulating structure(GO:0030312) |
| 0.0 | 3.5 | GO:0000138 | Golgi trans cisterna(GO:0000138) |
| 0.0 | 2.8 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.0 | 2.5 | GO:0005615 | extracellular space(GO:0005615) |
| 0.0 | 1.6 | GO:0005797 | Golgi medial cisterna(GO:0005797) |
| 0.0 | 1.5 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.2 | 1.2 | GO:0016363 | nuclear matrix(GO:0016363) |
| 0.2 | 0.7 | GO:0009514 | glyoxysome(GO:0009514) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 4.2 | GO:0009055 | electron carrier activity(GO:0009055) |
| 0.0 | 2.1 | GO:0030599 | pectinesterase activity(GO:0030599) |
| 0.1 | 1.9 | GO:0004568 | chitinase activity(GO:0004568) |
| 0.5 | 1.6 | GO:0016802 | adenosylhomocysteinase activity(GO:0004013) trialkylsulfonium hydrolase activity(GO:0016802) |
| 0.1 | 1.4 | GO:0004864 | protein phosphatase inhibitor activity(GO:0004864) |
| 0.1 | 1.4 | GO:0008810 | cellulase activity(GO:0008810) |
| 0.0 | 1.4 | GO:0047262 | polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262) |
| 0.3 | 1.3 | GO:0004478 | methionine adenosyltransferase activity(GO:0004478) |
| 0.3 | 1.3 | GO:0016629 | 12-oxophytodienoate reductase activity(GO:0016629) |
| 0.1 | 1.2 | GO:0002020 | protease binding(GO:0002020) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.3 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.0 | 0.1 | PID AP1 PATHWAY | AP-1 transcription factor network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.7 | REACTOME G1 S SPECIFIC TRANSCRIPTION | Genes involved in G1/S-Specific Transcription |
| 0.1 | 0.6 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.0 | 0.3 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.0 | 0.1 | REACTOME MEIOTIC SYNAPSIS | Genes involved in Meiotic Synapsis |
| 0.0 | 0.1 | REACTOME MITOCHONDRIAL PROTEIN IMPORT | Genes involved in Mitochondrial Protein Import |