Project
GSE130291:vernalization in Arabidopsis thaliana
Navigation
Downloads
Results for AT5G25190
Z-value: 0.63
Transcription factors associated with AT5G25190
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G25190
|
AT5G25190 | Integrase-type DNA-binding superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| ESE3 | arTal_v1_Chr5_-_8707885_8707885 | 0.27 | 3.5e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_+_12686459_12686459 Show fit | 0.57 |
AT4G24570.1
|
dicarboxylate carrier 2 |
|
| arTal_v1_Chr1_-_9956960_9956980 Show fit | 0.55 |
AT1G28370.1
AT1G28370.2 |
ERF domain protein 11 |
|
| arTal_v1_Chr1_+_6697874_6697874 Show fit | 0.54 |
AT1G19380.1
|
sugar, putative (DUF1195) |
|
| arTal_v1_Chr4_-_17606924_17607050 Show fit | 0.43 |
AT4G37450.1
AT4G37450.2 |
arabinogalactan protein 18 |
|
| arTal_v1_Chr2_+_18495215_18495215 Show fit | 0.43 |
AT2G44840.1
|
ethylene-responsive element binding factor 13 |
|
| arTal_v1_Chr4_-_16644928_16644928 Show fit | 0.42 |
AT4G34950.1
|
Major facilitator superfamily protein |
|
| arTal_v1_Chr2_-_8850111_8850111 Show fit | 0.40 |
AT2G20560.1
|
DNAJ heat shock family protein |
|
| arTal_v1_Chr5_+_733887_733887 Show fit | 0.40 |
AT5G03120.1
AT5G03120.2 |
transmembrane protein |
|
| arTal_v1_Chr2_+_11566288_11566288 Show fit | 0.40 |
AT2G27080.1
|
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family |
|
| arTal_v1_Chr4_+_12137995_12138137 Show fit | 0.39 |
AT4G23180.1
AT4G23180.3 AT4G23180.2 |
cysteine-rich RLK (RECEPTOR-like protein kinase) 10 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G25190
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 4.8 | GO:0010200 | response to chitin(GO:0010200) |
| 0.0 | 1.3 | GO:0045489 | pectin biosynthetic process(GO:0045489) |
| 0.0 | 1.0 | GO:0051607 | defense response to virus(GO:0051607) |
| 0.3 | 0.9 | GO:0071422 | thiosulfate transport(GO:0015709) succinate transmembrane transport(GO:0071422) |
| 0.0 | 0.8 | GO:2000033 | regulation of seed dormancy process(GO:2000033) |
| 0.1 | 0.7 | GO:0009759 | indole glucosinolate biosynthetic process(GO:0009759) |
| 0.0 | 0.7 | GO:0009969 | xyloglucan biosynthetic process(GO:0009969) |
| 0.0 | 0.7 | GO:0042335 | cuticle development(GO:0042335) |
| 0.1 | 0.6 | GO:0070814 | hydrogen sulfide biosynthetic process(GO:0070814) |
| 0.0 | 0.6 | GO:0006636 | unsaturated fatty acid biosynthetic process(GO:0006636) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 3.5 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 1.0 | GO:0000138 | Golgi trans cisterna(GO:0000138) |
| 0.0 | 0.7 | GO:0005797 | Golgi medial cisterna(GO:0005797) |
| 0.0 | 0.4 | GO:0000792 | heterochromatin(GO:0000792) |
| 0.1 | 0.3 | GO:0009897 | external side of plasma membrane(GO:0009897) |
| 0.0 | 0.3 | GO:1903561 | extracellular organelle(GO:0043230) extracellular exosome(GO:0070062) extracellular vesicle(GO:1903561) |
| 0.1 | 0.2 | GO:0045334 | clathrin-coated endocytic vesicle(GO:0045334) |
| 0.0 | 0.2 | GO:0000311 | plastid large ribosomal subunit(GO:0000311) |
| 0.0 | 0.2 | GO:0005640 | nuclear outer membrane(GO:0005640) |
| 0.0 | 0.2 | GO:0000326 | storage vacuole(GO:0000322) protein storage vacuole(GO:0000326) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 1.1 | GO:0047262 | polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262) |
| 0.3 | 0.9 | GO:0015117 | thiosulfate transmembrane transporter activity(GO:0015117) |
| 0.0 | 0.7 | GO:0005199 | structural constituent of cell wall(GO:0005199) |
| 0.1 | 0.6 | GO:0004020 | adenylylsulfate kinase activity(GO:0004020) |
| 0.0 | 0.6 | GO:0004190 | aspartic-type endopeptidase activity(GO:0004190) |
| 0.1 | 0.5 | GO:0016712 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen(GO:0016712) aromatase activity(GO:0070330) |
| 0.1 | 0.5 | GO:0033843 | xyloglucan 6-xylosyltransferase activity(GO:0033843) |
| 0.0 | 0.5 | GO:0042389 | omega-3 fatty acid desaturase activity(GO:0042389) |
| 0.1 | 0.4 | GO:0016856 | racemase and epimerase activity, acting on hydroxy acids and derivatives(GO:0016856) |
| 0.1 | 0.4 | GO:0004001 | adenosine kinase activity(GO:0004001) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.2 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.0 | 0.2 | PID S1P S1P1 PATHWAY | S1P1 pathway |
| 0.0 | 0.0 | PID PI3KCI PATHWAY | Class I PI3K signaling events |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.2 | REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS | Genes involved in Sphingolipid de novo biosynthesis |
| 0.0 | 0.2 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.0 | 0.2 | REACTOME FATTY ACID TRIACYLGLYCEROL AND KETONE BODY METABOLISM | Genes involved in Fatty acid, triacylglycerol, and ketone body metabolism |
| 0.0 | 0.1 | REACTOME TRANSCRIPTIONAL ACTIVITY OF SMAD2 SMAD3 SMAD4 HETEROTRIMER | Genes involved in Transcriptional activity of SMAD2/SMAD3:SMAD4 heterotrimer |
| 0.0 | 0.1 | REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT | Genes involved in Lipid digestion, mobilization, and transport |
| 0.0 | 0.1 | REACTOME GOLGI ASSOCIATED VESICLE BIOGENESIS | Genes involved in Golgi Associated Vesicle Biogenesis |
| 0.0 | 0.1 | REACTOME INNATE IMMUNE SYSTEM | Genes involved in Innate Immune System |
| 0.0 | 0.0 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |