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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT5G23930
Z-value: 1.10
Transcription factors associated with AT5G23930
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G23930
|
AT5G23930 | Mitochondrial transcription termination factor family protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT5G23930 | arTal_v1_Chr5_-_8076193_8076193 | -0.09 | 7.6e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_+_9698940_9698940 Show fit | 1.54 |
AT4G17340.1
|
tonoplast intrinsic protein 2;2 |
|
| arTal_v1_Chr4_-_7421828_7421828 Show fit | 1.46 |
AT4G12520.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr1_+_29130375_29130375 Show fit | 1.20 |
AT1G77520.1
|
O-methyltransferase family protein |
|
| arTal_v1_Chr5_+_1119937_1119937 Show fit | 1.14 |
AT5G04120.1
|
Phosphoglycerate mutase family protein |
|
| arTal_v1_Chr5_-_3172701_3172701 Show fit | 1.12 |
AT5G10130.1
|
Pollen Ole e 1 allergen and extensin family protein |
|
| arTal_v1_Chr1_+_29135904_29135904 Show fit | 1.11 |
AT1G77530.1
AT1G77530.2 |
O-methyltransferase family protein |
|
| arTal_v1_Chr2_-_15160799_15160799 Show fit | 1.03 |
AT2G36100.1
|
Uncharacterized protein family (UPF0497) |
|
| arTal_v1_Chr4_-_13317640_13317640 Show fit | 1.01 |
AT4G26320.1
|
arabinogalactan protein 13 |
|
| arTal_v1_Chr5_-_24377206_24377206 Show fit | 0.97 |
AT5G60660.1
|
plasma membrane intrinsic protein 2;4 |
|
| arTal_v1_Chr1_+_23331563_23331563 Show fit | 0.96 |
AT1G62980.1
|
expansin A18 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G23930
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 3.0 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.1 | 2.7 | GO:0071577 | zinc II ion transmembrane transport(GO:0071577) |
| 0.0 | 2.6 | GO:0009631 | cold acclimation(GO:0009631) |
| 0.1 | 2.1 | GO:0016998 | cell wall macromolecule catabolic process(GO:0016998) |
| 0.1 | 2.0 | GO:0010345 | suberin biosynthetic process(GO:0010345) |
| 0.4 | 1.9 | GO:0006564 | L-serine biosynthetic process(GO:0006564) |
| 0.0 | 1.8 | GO:0009828 | plant-type cell wall loosening(GO:0009828) |
| 0.0 | 1.8 | GO:0009834 | plant-type secondary cell wall biogenesis(GO:0009834) |
| 0.3 | 1.7 | GO:0007043 | cell-cell junction assembly(GO:0007043) |
| 0.0 | 1.5 | GO:0080167 | response to karrikin(GO:0080167) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 11.5 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 3.3 | GO:0030312 | cell wall(GO:0005618) external encapsulating structure(GO:0030312) |
| 0.0 | 3.1 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.0 | 2.2 | GO:0009705 | plant-type vacuole membrane(GO:0009705) |
| 0.0 | 1.8 | GO:0005764 | lysosome(GO:0005764) |
| 0.2 | 1.7 | GO:0048226 | Casparian strip(GO:0048226) |
| 0.1 | 1.1 | GO:0016602 | CCAAT-binding factor complex(GO:0016602) |
| 0.1 | 0.9 | GO:0031588 | nucleotide-activated protein kinase complex(GO:0031588) |
| 0.0 | 0.9 | GO:0031306 | intrinsic component of mitochondrial outer membrane(GO:0031306) integral component of mitochondrial outer membrane(GO:0031307) |
| 0.1 | 0.8 | GO:0000322 | storage vacuole(GO:0000322) protein storage vacuole(GO:0000326) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 4.1 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 0.1 | 2.7 | GO:0005385 | zinc ion transmembrane transporter activity(GO:0005385) |
| 0.0 | 2.6 | GO:0009055 | electron carrier activity(GO:0009055) |
| 0.1 | 2.5 | GO:0080030 | methyl indole-3-acetate esterase activity(GO:0080030) |
| 0.0 | 2.1 | GO:0042910 | xenobiotic transporter activity(GO:0042910) |
| 0.1 | 1.9 | GO:0052716 | hydroquinone:oxygen oxidoreductase activity(GO:0052716) |
| 0.3 | 1.8 | GO:0047274 | galactinol-sucrose galactosyltransferase activity(GO:0047274) |
| 0.0 | 1.7 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
| 0.2 | 1.6 | GO:0033946 | xyloglucan-specific endo-beta-1,4-glucanase activity(GO:0033946) |
| 0.1 | 1.6 | GO:0004568 | chitinase activity(GO:0004568) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 1.1 | SA CASPASE CASCADE | Apoptosis is mediated by caspases, cysteine proteases arranged in a proteolytic cascade. |
| 0.3 | 1.0 | PID CASPASE PATHWAY | Caspase cascade in apoptosis |
| 0.1 | 0.8 | PID CXCR4 PATHWAY | CXCR4-mediated signaling events |
| 0.0 | 0.4 | PID ATR PATHWAY | ATR signaling pathway |
| 0.0 | 0.4 | PID E2F PATHWAY | E2F transcription factor network |
| 0.1 | 0.2 | PID MYC PATHWAY | C-MYC pathway |
| 0.0 | 0.2 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
| 0.0 | 0.2 | PID VEGF VEGFR PATHWAY | VEGF and VEGFR signaling network |
| 0.0 | 0.1 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.0 | 0.0 | PID BETA CATENIN NUC PATHWAY | Regulation of nuclear beta catenin signaling and target gene transcription |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 1.0 | REACTOME NOD1 2 SIGNALING PATHWAY | Genes involved in NOD1/2 Signaling Pathway |
| 0.2 | 0.7 | REACTOME APOPTOTIC EXECUTION PHASE | Genes involved in Apoptotic execution phase |
| 0.1 | 0.6 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.2 | 0.5 | REACTOME GLYCOSPHINGOLIPID METABOLISM | Genes involved in Glycosphingolipid metabolism |
| 0.1 | 0.5 | REACTOME HOMOLOGOUS RECOMBINATION REPAIR OF REPLICATION INDEPENDENT DOUBLE STRAND BREAKS | Genes involved in Homologous recombination repair of replication-independent double-strand breaks |
| 0.1 | 0.5 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
| 0.1 | 0.3 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
| 0.0 | 0.3 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.1 | 0.2 | REACTOME PREFOLDIN MEDIATED TRANSFER OF SUBSTRATE TO CCT TRIC | Genes involved in Prefoldin mediated transfer of substrate to CCT/TriC |
| 0.1 | 0.2 | REACTOME SEMAPHORIN INTERACTIONS | Genes involved in Semaphorin interactions |