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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT5G23280

Z-value: 0.36

Transcription factors associated with AT5G23280

Gene Symbol Gene ID Gene Info
AT5G23280
AT5G23280 TCP family transcription factor

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
AT5G23280arTal_v1_Chr5_+_7842607_78426070.401.6e-01Click!

Activity profile of AT5G23280 motif

Sorted Z-values of AT5G23280 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr1_+_209208 0.72 AT1G01580.1
FRO2
ferric reduction oxidase 2
Chr1_+_208995 0.72 AT1G01580.2
FRO2
ferric reduction oxidase 2
Chr3_+_2441565 0.67 AT3G07650.4
AT3G07650.1
AT3G07650.3
AT3G07650.2
COL9
CONSTANS-like 9
Chr5_-_22712441 0.51 AT5G56080.1
NAS2
nicotianamine synthase 2
Chr5_+_5205869 0.51 AT5G15950.1
AT5G15950
Adenosylmethionine decarboxylase family protein
Chr5_+_5206156 0.50 AT5G15950.2
AT5G15950
Adenosylmethionine decarboxylase family protein
Chr4_-_18472048 0.41 AT4G39800.1
MIPS1
myo-inositol-1-phosphate synthase 1
Chr4_-_11965684 0.39 AT4G22770.2
AT4G22770.1
AT4G22770
AT hook motif DNA-binding family protein
Chr3_-_4042075 0.37 AT3G12710.1
AT3G12710
DNA glycosylase superfamily protein
Chr4_-_11519805 0.35 AT4G21680.1
NRT1.8
NITRATE TRANSPORTER 1.8
Chr1_-_25870227 0.33 AT1G68825.1
RTFL15
ROTUNDIFOLIA like 15
Chr1_-_18360426 0.31 AT1G49600.2
AT1G49600.1
AT1G49600.3
RBP47A
RNA-binding protein 47A
Chr1_-_18753941 0.31 AT1G50630.1
AT1G50630.2
AT1G50630
extracellular ligand-gated ion channel protein (DUF3537)
Chr3_+_6393747 0.31 AT3G18560.1
AT3G18560
hypothetical protein
Chr1_+_6688463 0.30 AT1G19350.4
AT1G19350.3
AT1G19350.5
BES1
Brassinosteroid signaling positive regulator (BZR1) family protein
Chr4_+_10861382 0.29 AT4G20070.1
AT4G20070.2
AAH
allantoate amidohydrolase
Chr4_-_13019400 0.28 AT4G25480.1
DREB1A
dehydration response element B1A
Chr4_+_17579618 0.28 AT4G37390.1
BRU6
Auxin-responsive GH3 family protein
Chr1_+_6688698 0.26 AT1G19350.1
AT1G19350.6
BES1
Brassinosteroid signaling positive regulator (BZR1) family protein
Chr3_-_21434648 0.26 AT3G57880.1
AT3G57880.3
AT3G57880.4
AT3G57880
Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein
Chr1_-_7267354 0.26 AT1G20890.2
AT1G20890.1
AT1G20890
caveolin-1 protein
Chr3_-_1268350 0.26 AT3G04670.2
AT3G04670.1
WRKY39
WRKY DNA-binding protein 39
Chr5_+_25268950 0.26 AT5G62960.1
AT5G62960.2
AT5G62960
UDP-N-acetylglucosamine-N-acetylmuramyl-pyrophosphoryl-undecaprenol N-acetylglucosamine protein
Chr2_-_17202848 0.25 AT2G41250.1
AT2G41250
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Chr1_-_6904155 0.25 AT1G19880.1
AT1G19880
Regulator of chromosome condensation (RCC1) family protein
Chr1_-_4882003 0.25 AT1G14290.2
SBH2
sphingoid base hydroxylase 2
Chr2_+_9488413 0.25 AT2G22330.2
AT2G22330.1
CYP79B3
cytochrome P450, family 79, subfamily B, polypeptide 3
Chr5_+_579744 0.25 AT5G02580.1
AT5G02580.3
AT5G02580.2
AT5G02580
argininosuccinate lyase
Chr3_+_5243432 0.24 AT3G15510.1
NAC2
NAC domain containing protein 2
Chr1_-_4882265 0.24 AT1G14290.1
SBH2
sphingoid base hydroxylase 2
Chr1_+_28365824 0.24 AT1G75540.1
BBX21
salt tolerance homolog2
Chr2_+_18727504 0.24 AT2G45430.1
AHL22
AT-hook motif nuclear-localized protein 22
Chr2_-_2843338 0.24 AT2G06925.2
AT2G06925.1
PLA2-ALPHA
Phospholipase A2 family protein
Chr3_-_20903080 0.24 AT3G56370.1
AT3G56370
Leucine-rich repeat protein kinase family protein
Chr1_-_22417244 0.23 AT1G60890.2
AT1G60890.1
AT1G60890
Phosphatidylinositol-4-phosphate 5-kinase family protein
Chr1_-_19250823 0.23 AT1G51840.1
AT1G51840.3
AT1G51840.4
AT1G51840.5
AT1G51840.2
AT1G51840
kinase-like protein
Chr5_+_4776733 0.23 AT5G14780.1
AT5G14780.3
AT5G14780.2
FDH
formate dehydrogenase
Chr1_+_21043348 0.23 AT1G56220.2
AT1G56220.1
AT1G56220
Dormancy/auxin associated family protein
Chr1_+_21042951 0.23 AT1G56220.4
AT1G56220.5
AT1G56220.3
AT1G56220
Dormancy/auxin associated family protein
Chr5_-_10092686 0.22 AT5G28080.7
AT5G28080.1
AT5G28080.6
AT5G28080.2
AT5G28080.5
AT5G28080.3
AT5G28080.4
AT5G28080.8
WNK9
Protein kinase superfamily protein
Chr3_-_21433954 0.22 AT3G57880.2
AT3G57880
Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein
Chr5_-_6591305 0.22 AT5G19530.1
AT5G19530.2
ACL5
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr3_-_4123582 0.22 AT3G12920.1
BRG3
SBP (S-ribonuclease binding protein) family protein
Chr2_-_16846194 0.21 AT2G40330.1
PYL6
PYR1-like 6
Chr5_-_23830520 0.21 AT5G59020.1
AT5G59020
hepatocyte growth factor activator, putative (DUF3527)
Chr1_-_22749199 0.21 AT1G61640.2
AT1G61640.3
AT1G61640.1
AT1G61640
Protein kinase superfamily protein
Chr3_-_17910736 0.21 AT3G48360.3
AT3G48360.1
AT3G48360.2
BT2
BTB and TAZ domain protein 2
Chr5_+_22388782 0.20 AT5G55180.2
AT5G55180
O-Glycosyl hydrolases family 17 protein
Chr3_+_5539631 0.20 AT3G16340.2
ABCG29
pleiotropic drug resistance 1
Chr3_+_5539385 0.20 AT3G16340.1
ABCG29
pleiotropic drug resistance 1
Chr2_+_19245591 0.20 AT2G46830.1
AT2G46830.2
CCA1
circadian clock associated 1
Chr2_+_15238093 0.19 AT2G36350.1
AT2G36350
Protein kinase superfamily protein
Chr2_-_18013252 0.19 AT2G43360.1
BIO2
Radical SAM superfamily protein
Chr4_+_18525042 0.19 AT4G39950.2
CYP79B2
cytochrome P450, family 79, subfamily B, polypeptide 2
Chr4_+_18525246 0.19 AT4G39950.1
CYP79B2
cytochrome P450, family 79, subfamily B, polypeptide 2
Chr4_+_17305758 0.19 AT4G36710.1
HAM4
GRAS family transcription factor
Chr1_+_1215925 0.19 AT1G04480.1
AT1G04480
Ribosomal protein L14p/L23e family protein
Chr5_+_22388521 0.18 AT5G55180.1
AT5G55180
O-Glycosyl hydrolases family 17 protein
Chr1_+_29759030 0.18 AT1G79110.2
AT1G79110.3
AT1G79110.1
BRG2
zinc ion binding protein
Chr1_-_1143051 0.18 AT1G04270.2
AT1G04270.1
RPS15
cytosolic ribosomal protein S15
Chr3_-_15801200 0.18 AT3G44010.2
AT3G44010.1
AT3G44010
Ribosomal protein S14p/S29e family protein
Chr5_-_5310951 0.18 AT5G16250.1
AT5G16250
transmembrane protein
Chr5_-_21619281 0.18 AT5G53290.1
CRF3
cytokinin response factor 3
Chr2_+_100484 0.18 AT2G01150.2
AT2G01150.3
AT2G01150.1
RHA2B
RING-H2 finger protein 2B
Chr3_+_5234457 0.18 AT3G15500.1
NAC3
NAC domain containing protein 3
Chr5_+_19116719 0.18 AT5G47060.1
AT5G47060.2
AT5G47060
hypothetical protein (DUF581)
Chr5_+_4591690 0.17 AT5G14230.1
AT5G14230
ankyrin
Chr5_+_26510146 0.17 AT5G66360.2
AT5G66360.1
DIM1B
Ribosomal RNA adenine dimethylase family protein
Chr5_+_26253408 0.17 AT5G65670.1
IAA9
indole-3-acetic acid inducible 9
Chr5_+_26253947 0.17 AT5G65670.2
IAA9
indole-3-acetic acid inducible 9
Chr4_-_12254275 0.17 AT4G23490.1
AT4G23490
fringe-like protein (DUF604)
Chr3_+_16006508 0.17 AT3G44330.1
AT3G44330
M28 Zn-peptidase nicastrin
Chr2_+_12744116 0.17 AT2G29890.4
AT2G29890.1
AT2G29890.2
AT2G29890.3
AT2G29890.5
VLN1
villin-like 1
Chr5_-_9944942 0.17 AT5G27920.1
AT5G27920
F-box family protein
Chr3_-_23013909 0.17 AT3G62150.2
AT3G62150.1
AT3G62150.3
ABCB21
P-glycoprotein 21
Chr2_+_9917443 0.17 AT2G23310.1
AT2G23310.2
ATRER1C1
Rer1 family protein
Chr3_+_2622849 0.17 AT3G08640.1
AT3G08640
alphavirus core family protein (DUF3411)
Chr5_+_4593198 0.16 AT5G14230.2
AT5G14230
ankyrin
Chr3_+_5183641 0.16 AT3G15355.1
UBC25
ubiquitin-conjugating enzyme 25
Chr1_+_564018 0.16 AT1G02640.1
BXL2
beta-xylosidase 2
Chr4_+_12870006 0.16 AT4G25050.2
AT4G25050.1
ACP4
acyl carrier protein 4
Chr1_+_16739192 0.16 AT1G44050.1
AT1G44050
Cysteine/Histidine-rich C1 domain family protein
Chr1_-_30202349 0.15 AT1G80340.1
GA3OX2
gibberellin 3-oxidase 2
Chr2_+_19246681 0.15 AT2G46830.3
CCA1
circadian clock associated 1
Chr1_+_5090809 0.15 AT1G14780.1
AT1G14780
MAC/Perforin domain-containing protein
Chr1_+_10991478 0.15 AT1G30870.1
AT1G30870
Peroxidase superfamily protein
Chr3_-_17519305 0.15 AT3G47530.1
AT3G47530
Pentatricopeptide repeat (PPR) superfamily protein
Chr1_-_5104774 0.15 AT1G14810.2
AT1G14810.1
AT1G14810
semialdehyde dehydrogenase family protein
Chr1_+_325316 0.15 AT1G01950.1
AT1G01950.4
AT1G01950.3
AT1G01950.2
ARK2
armadillo repeat kinesin 2
Chr4_-_13990539 0.15 AT4G28200.1
AT4G28200
U3 small nucleolar RNA-associated-like protein
Chr1_-_26042741 0.14 AT1G69270.1
RPK1
receptor-like protein kinase 1
Chr3_-_10047453 0.14 AT3G27210.1
AT3G27210
hypothetical protein
Chr1_+_27778984 0.14 AT1G73870.1
BBX16
B-box type zinc finger protein with CCT domain-containing protein
Chr4_-_10714745 0.14 AT4G19700.1
RING
SBP (S-ribonuclease binding protein) family protein
Chr1_-_29436659 0.14 AT1G78240.2
AT1G78240.1
TSD2
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr4_+_12872379 0.14 AT4G25070.2
AT4G25070.1
AT4G25070
caldesmon-like protein
Chr3_-_9255083 0.14 AT3G25500.1
AFH1
formin homology 1
Chr4_-_14776247 0.14 AT4G30190.1
HA2
H[+]-ATPase 2
Chr1_-_25727701 0.14 AT1G68550.1
CRF10
Integrase-type DNA-binding superfamily protein
Chr5_+_7138762 0.14 AT5G21020.2
AT5G21020
transmembrane protein
Chr4_-_14776058 0.13 AT4G30190.2
HA2
H[+]-ATPase 2
Chr1_-_25727386 0.13 AT1G68550.2
CRF10
Integrase-type DNA-binding superfamily protein
Chr5_+_8428078 0.13 AT5G24610.1
AT5G24610
cyclic AMP-responsive element-binding protein
Chr4_-_14790501 0.13 AT4G30200.2
AT4G30200.3
AT4G30200.4
AT4G30200.1
VEL1
vernalization5/VIN3-like protein
Chr1_-_29239484 0.13 AT1G77760.1
NIA1
nitrate reductase 1
Chr5_+_6192327 0.13 AT5G18610.2
AT5G18610.3
AT5G18610.1
AT5G18610
Protein kinase superfamily protein
Chr1_-_2055547 0.13 AT1G06700.1
AT1G06700.2
AT1G06700.3
AT1G06700
Protein kinase superfamily protein
Chr5_+_19549676 0.13 AT5G48220.3
AT5G48220.4
AT5G48220.2
AT5G48220.1
AT5G48220
Aldolase-type TIM barrel family protein
Chr3_-_4817981 0.13 AT3G14410.1
AT3G14410
Nucleotide/sugar transporter family protein
Chr3_+_4510965 0.13 AT3G13750.1
BGAL1
beta galactosidase 1
Chr5_+_24396981 0.13 AT5G60690.1
REV
Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein
Chr3_+_18753541 0.13 AT3G50530.2
CRK
CDPK-related kinase
Chr3_+_17087538 0.13 AT3G46430.1
AT3G46430
ATP synthase
Chr1_+_20048434 0.13 AT1G53700.1
WAG1
WAG 1
Chr4_+_15487914 0.13 AT4G32020.1
AT4G32020
serine/arginine repetitive matrix-like protein
Chr5_+_7676938 0.13 AT5G22940.2
F8H
glucuronoxylan glucuronosyltransferase, putative
Chr4_-_14439723 0.13 AT4G29310.1
AT4G29310.2
AT4G29310
DUF1005 family protein (DUF1005)
Chr1_-_1157786 0.13 AT1G04310.2
AT1G04310.1
ERS2
ethylene response sensor 2
Chr3_+_18753337 0.12 AT3G50530.1
CRK
CDPK-related kinase
Chr2_+_18489607 0.12 AT2G44830.2
AT2G44830
Protein kinase superfamily protein
Chr3_+_5748497 0.12 AT3G16850.1
AT3G16850
Pectin lyase-like superfamily protein
Chr1_-_8429241 0.12 AT1G23860.2
AT1G23860.3
AT1G23860.1
AT1G23860.4
RSZ21
RS-containing zinc finger protein 21
Chr4_+_1249971 0.12 AT4G02800.1
AT4G02800
GRIP/coiled-coil protein
Chr2_+_18489875 0.12 AT2G44830.1
AT2G44830
Protein kinase superfamily protein
Chr3_+_22979848 0.12 AT3G62060.1
AT3G62060.2
AT3G62060
Pectinacetylesterase family protein
Chr5_+_25537074 0.12 AT5G63810.1
BGAL10
beta-galactosidase 10
Chr5_+_3157694 0.12 AT5G10100.1
AT5G10100.3
AT5G10100.4
TPPI
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Chr1_-_27185883 0.12 AT1G72220.1
AT1G72220
RING/U-box superfamily protein
Chr1_-_29084285 0.12 AT1G77390.1
CYCA1%3B2
CYCLIN A1;2
Chr2_+_18490030 0.12 AT2G44830.3
AT2G44830
Protein kinase superfamily protein
Chr2_+_17572305 0.12 AT2G42150.1
AT2G42150
DNA-binding bromodomain-containing protein
Chr5_+_25703649 0.12 AT5G64260.1
EXL2
EXORDIUM like 2
Chr4_+_16091535 0.12 AT4G33440.1
AT4G33440
Pectin lyase-like superfamily protein
Chr5_+_22865074 0.12 AT5G56460.1
AT5G56460
Protein kinase superfamily protein
Chr5_+_7676662 0.12 AT5G22940.1
F8H
glucuronoxylan glucuronosyltransferase, putative
Chr2_-_19114173 0.12 AT2G46550.3
AT2G46550.1
AT2G46550.2
AT2G46550
transmembrane protein
Chr5_+_4292704 0.12 AT5G13390.1
AT5G13390.2
NEF1
no exine formation 1
Chr5_-_25902127 0.12 AT5G64780.1
AT5G64780
holocarboxylase synthetase
Chr2_+_17948062 0.12 AT2G43160.4
AT2G43160.2
AT2G43160
ENTH/VHS family protein
Chr3_+_3318975 0.12 AT3G10610.1
AT3G10610
Ribosomal S17 family protein
Chr4_-_4637450 0.12 AT4G07820.1
AT4G07820
CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein
Chr2_+_17947800 0.11 AT2G43160.1
AT2G43160.3
AT2G43160.5
AT2G43160
ENTH/VHS family protein
Chr1_+_8441073 0.11 AT1G23900.3
AT1G23900.2
AT1G23900.1
GAMMA-ADAPTIN 1
gamma-adaptin 1
Chr2_-_17806073 0.11 AT2G42790.1
CSY3
citrate synthase 3
Chr3_-_4571260 0.11 AT3G13870.2
AT3G13870.1
RHD3
Root hair defective 3 GTP-binding protein (RHD3)
Chr1_-_16689563 0.11 AT1G43980.1
AT1G43980
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr5_-_26479577 0.11 AT5G66290.2
AT5G66290.1
AT5G66290.3
AT5G66290
hypothetical protein
Chr5_-_2403877 0.11 AT5G07590.1
AT5G07590.2
AT5G07590.4
AT5G07590.3
AT5G07590
Transducin/WD40 repeat-like superfamily protein
Chr3_+_2803528 0.11 AT3G09150.2
AT3G09150.4
AT3G09150.1
AT3G09150.3
HY2
phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin synthase (HY2)
Chr5_+_16370368 0.11 AT5G40860.2
AT5G40860.1
AT5G40860
transmembrane protein
Chr3_-_7412457 0.11 AT3G21140.1
AT3G21140
Pyridoxamine 5'-phosphate oxidase family protein
Chr1_-_6959148 0.11 AT1G20070.1
AT1G20070
hypothetical protein
Chr3_+_21147558 0.11 AT3G57130.2
AT3G57130.1
BOP1
Ankyrin repeat family protein / BTB/POZ domain-containing protein
Chr4_+_13675537 0.10 AT4G27310.1
BBX28
B-box type zinc finger family protein
Chr3_-_538126 0.10 AT3G02550.1
LBD41
LOB domain-containing protein 41
Chr2_+_10860668 0.10 AT2G25520.1
AT2G25520
Drug/metabolite transporter superfamily protein
Chr3_-_22169984 0.10 AT3G60030.1
SPL12
squamosa promoter-binding protein-like 12
Chr3_+_1983731 0.10 AT3G06470.1
AT3G06470
GNS1/SUR4 membrane protein family
Chr5_-_6182706 0.10 AT5G18590.2
AT5G18590.1
AT5G18590
Galactose oxidase/kelch repeat superfamily protein
Chr1_+_8962087 0.10 AT1G25520.1
AT1G25520
Uncharacterized protein family (UPF0016)
Chr5_-_22764576 0.10 AT5G56240.1
AT5G56240.3
AT5G56240.2
AT5G56240
hapless protein
Chr5_+_18825100 0.10 AT5G46410.1
AT5G46410.2
AT5G46410.3
SSP4
SCP1-like small phosphatase 4
Chr1_-_29879204 0.10 AT1G79430.1
AT1G79430.2
APL
Homeodomain-like superfamily protein
Chr2_+_9995465 0.10 AT2G23460.1
XLG1
extra-large G-protein 1
Chr2_+_19000180 0.10 AT2G46270.2
AT2G46270.1
AT2G46270.4
AT2G46270.3
GBF3
G-box binding factor 3
Chr3_-_22362579 0.09 AT3G60520.1
AT3G60520
zinc ion-binding protein
Chr5_-_3423299 0.09 AT5G10820.1
AT5G10820
Major facilitator superfamily protein
Chr1_+_6594883 0.09 AT1G19100.1
DMS11
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein
Chr5_-_26229574 0.09 AT5G65630.1
GTE7
global transcription factor group E7
Chr1_-_6278150 0.09 AT1G18250.2
AT1G18250.1
ATLP-1
Pathogenesis-related thaumatin superfamily protein
Chr5_+_25243405 0.09 AT5G62890.3
AT5G62890.1
AT5G62890
Xanthine/uracil permease family protein
Chr1_-_8153530 0.09 AT1G23020.2
AT1G23020.7
AT1G23020.6
AT1G23020.5
AT1G23020.4
AT1G23020.3
AT1G23020.1
FRO3
ferric reduction oxidase 3
Chr2_+_11263889 0.09 AT2G26480.1
UGT76D1
UDP-glucosyl transferase 76D1
Chr3_-_7208547 0.09 AT3G20630.1
UBP14
ubiquitin-specific protease 14
Chr5_+_25243148 0.09 AT5G62890.2
AT5G62890.4
AT5G62890
Xanthine/uracil permease family protein
Chr5_+_4782909 0.09 AT5G14790.1
AT5G14790
ARM repeat superfamily protein
Chr3_-_23377661 0.09 AT3G63270.1
AT3G63270
nuclease
Chr3_-_4799612 0.09 AT3G14370.1
WAG2
Protein kinase superfamily protein
Chr3_+_8501556 0.09 AT3G23640.3
AT3G23640.2
HGL1
heteroglycan glucosidase 1
Chr1_+_7272526 0.09 AT1G20900.1
ESC
Putative AT-hook DNA-binding family protein
Chr4_-_13055626 0.08 AT4G25570.1
ACYB-2
Cytochrome b561/ferric reductase transmembrane protein family
Chr5_+_25881033 0.08 AT5G64740.1
CESA6
cellulose synthase 6
Chr3_-_4834015 0.08 AT3G14440.1
NCED3
nine-cis-epoxycarotenoid dioxygenase 3
Chr5_-_12565780 0.08 AT5G33300.1
AT5G33300
chromosome-associated kinesin-like protein
Chr4_+_12503672 0.08 AT4G24060.1
AT4G24060
Dof-type zinc finger DNA-binding family protein
Chr4_+_9560078 0.08 AT4G16990.16
AT4G16990.17
AT4G16990.1
AT4G16990.3
AT4G16990.4
RLM3
disease resistance protein (TIR-NBS class)
Chr4_+_9558571 0.08 AT4G16990.5
AT4G16990.8
AT4G16990.7
AT4G16990.6
AT4G16990.2
AT4G16990.9
RLM3
disease resistance protein (TIR-NBS class)
Chr1_-_21635344 0.08 AT1G58320.1
AT1G58320
PLAC8 family protein
Chr1_+_28906441 0.08 AT1G76950.1
PRAF1
Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein
Chr3_+_20714946 0.08 AT3G55830.1
EPC1
Nucleotide-diphospho-sugar transferases superfamily protein
Chr2_+_13033418 0.08 AT2G30590.1
WRKY21
WRKY DNA-binding protein 21
Chr1_-_30142697 0.08 AT1G80130.1
AT1G80130
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr5_-_19909452 0.08 AT5G49120.1
AT5G49120
DUF581 family protein, putative (DUF581)
Chr4_-_18451293 0.08 AT4G39770.2
AT4G39770.1
TPPH
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Chr3_+_4004469 0.08 AT3G12600.1
AT3G12600.2
NUDT16
nudix hydrolase homolog 16
Chr3_-_6463101 0.08 AT3G18770.1
AT3G18770
Autophagy-related protein 13
Chr4_-_13055800 0.08 AT4G25570.2
ACYB-2
Cytochrome b561/ferric reductase transmembrane protein family
Chr4_-_9834859 0.08 AT4G17670.1
AT4G17670
senescence-associated family protein (DUF581)
Chr1_+_28185504 0.08 AT1G75080.1
AT1G75080.2
BZR1
Brassinosteroid signaling positive regulator (BZR1) family protein
Chr5_+_2167468 0.08 AT5G06980.4
AT5G06980.3
AT5G06980.5
AT5G06980.2
AT5G06980
hypothetical protein

Network of associatons between targets according to the STRING database.

First level regulatory network of AT5G23280

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 GO:0006658 phosphatidylserine metabolic process(GO:0006658) phosphatidylserine biosynthetic process(GO:0006659)
0.1 0.5 GO:0030418 nicotianamine metabolic process(GO:0030417) nicotianamine biosynthetic process(GO:0030418) tricarboxylic acid biosynthetic process(GO:0072351)
0.1 0.6 GO:0046218 tryptophan catabolic process(GO:0006569) indolalkylamine catabolic process(GO:0046218)
0.1 0.6 GO:1904961 quiescent center organization(GO:1904961)
0.1 0.7 GO:0048579 negative regulation of long-day photoperiodism, flowering(GO:0048579)
0.1 0.2 GO:0051973 positive regulation of telomerase activity(GO:0051973)
0.1 0.3 GO:0051016 barbed-end actin filament capping(GO:0051016)
0.1 0.2 GO:1905157 positive regulation of photosynthesis(GO:1905157)
0.1 0.3 GO:0010136 ureide metabolic process(GO:0010135) ureide catabolic process(GO:0010136)
0.1 0.4 GO:0042754 negative regulation of circadian rhythm(GO:0042754)
0.0 0.2 GO:0009102 biotin metabolic process(GO:0006768) biotin biosynthetic process(GO:0009102)
0.0 0.1 GO:0009945 radial axis specification(GO:0009945)
0.0 0.2 GO:0009647 skotomorphogenesis(GO:0009647)
0.0 0.1 GO:0010394 homogalacturonan biosynthetic process(GO:0010289) homogalacturonan metabolic process(GO:0010394)
0.0 0.2 GO:0071715 icosanoid secretion(GO:0032309) arachidonic acid secretion(GO:0050482) icosanoid transport(GO:0071715) fatty acid derivative transport(GO:1901571) arachidonate transport(GO:1903963)
0.0 0.1 GO:1900111 positive regulation of histone H3-K9 dimethylation(GO:1900111)
0.0 0.1 GO:0071763 nuclear membrane organization(GO:0071763)
0.0 0.5 GO:0046520 sphingoid biosynthetic process(GO:0046520)
0.0 1.5 GO:0055072 iron ion homeostasis(GO:0055072)
0.0 0.1 GO:0010024 phytochromobilin biosynthetic process(GO:0010024) phytochromobilin metabolic process(GO:0051202)
0.0 0.1 GO:0015959 diadenosine polyphosphate metabolic process(GO:0015959) diadenosine tetraphosphate metabolic process(GO:0015965)
0.0 0.2 GO:0051091 positive regulation of sequence-specific DNA binding transcription factor activity(GO:0051091)
0.0 0.1 GO:0010254 nectary development(GO:0010254) bract morphogenesis(GO:0010433) bract formation(GO:0010434)
0.0 0.2 GO:0060919 auxin influx(GO:0060919)
0.0 0.4 GO:1901141 regulation of lignin biosynthetic process(GO:1901141)
0.0 0.1 GO:0016320 endoplasmic reticulum membrane fusion(GO:0016320)
0.0 0.1 GO:0044380 protein localization to cytoskeleton(GO:0044380) protein localization to microtubule cytoskeleton(GO:0072698)
0.0 0.1 GO:0006809 nitric oxide biosynthetic process(GO:0006809)
0.0 0.3 GO:2000071 regulation of defense response by callose deposition(GO:2000071)
0.0 0.2 GO:0046085 adenosine metabolic process(GO:0046085)
0.0 0.2 GO:0031222 arabinan catabolic process(GO:0031222)
0.0 0.1 GO:0010395 rhamnogalacturonan I metabolic process(GO:0010395)
0.0 0.1 GO:0090213 regulation of radial pattern formation(GO:0090213)
0.0 0.2 GO:0048317 seed morphogenesis(GO:0048317)
0.0 0.2 GO:0010413 glucuronoxylan metabolic process(GO:0010413) glucuronoxylan biosynthetic process(GO:0010417)
0.0 0.3 GO:0048759 xylem vessel member cell differentiation(GO:0048759)
0.0 0.2 GO:0070534 protein K63-linked ubiquitination(GO:0070534)
0.0 0.1 GO:0006549 isoleucine metabolic process(GO:0006549) isoleucine biosynthetic process(GO:0009097)
0.0 0.1 GO:0010951 negative regulation of endopeptidase activity(GO:0010951) regulation of endopeptidase activity(GO:0052548)
0.0 0.1 GO:0048656 anther wall tapetum formation(GO:0048656) anther wall tapetum cell differentiation(GO:0048657)
0.0 0.1 GO:0007187 G-protein coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger(GO:0007187) adenylate cyclase-modulating G-protein coupled receptor signaling pathway(GO:0007188)
0.0 0.1 GO:0060151 peroxisome localization(GO:0060151)
0.0 0.2 GO:0006621 protein retention in ER lumen(GO:0006621)
0.0 0.4 GO:0006284 base-excision repair(GO:0006284)
0.0 0.0 GO:0071494 cellular response to UV-C(GO:0071494)
0.0 0.0 GO:1902448 regulation of shade avoidance(GO:1902446) positive regulation of shade avoidance(GO:1902448)
0.0 0.0 GO:0035247 peptidyl-arginine methylation, to asymmetrical-dimethyl arginine(GO:0019919) histone arginine methylation(GO:0034969) peptidyl-arginine N-methylation(GO:0035246) peptidyl-arginine omega-N-methylation(GO:0035247)
0.0 0.2 GO:0080163 regulation of protein serine/threonine phosphatase activity(GO:0080163)
0.0 0.2 GO:0034314 Arp2/3 complex-mediated actin nucleation(GO:0034314)
0.0 0.0 GO:0051512 response to cycloheximide(GO:0046898) positive regulation of unidimensional cell growth(GO:0051512) cellular response to external biotic stimulus(GO:0071217)
0.0 0.1 GO:0046345 sesquiterpenoid catabolic process(GO:0016107) apocarotenoid catabolic process(GO:0043290) abscisic acid catabolic process(GO:0046345)
0.0 0.1 GO:1902290 positive regulation of defense response to oomycetes(GO:1902290)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0030130 clathrin coat of trans-Golgi network vesicle(GO:0030130)
0.0 0.1 GO:0034388 Pwp2p-containing subcomplex of 90S preribosome(GO:0034388)
0.0 0.2 GO:0000312 plastid small ribosomal subunit(GO:0000312)
0.0 0.1 GO:0010330 cellulose synthase complex(GO:0010330)
0.0 0.2 GO:0005885 Arp2/3 protein complex(GO:0005885)
0.0 0.4 GO:0010494 cytoplasmic stress granule(GO:0010494)
0.0 0.1 GO:0005677 chromatin silencing complex(GO:0005677)
0.0 0.1 GO:0005834 heterotrimeric G-protein complex(GO:0005834)
0.0 0.0 GO:0012510 trans-Golgi network transport vesicle membrane(GO:0012510)
0.0 0.1 GO:0034515 proteasome storage granule(GO:0034515)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.5 GO:0000170 sphingosine hydroxylase activity(GO:0000170)
0.1 1.5 GO:0016723 ferric-chelate reductase activity(GO:0000293) oxidoreductase activity, oxidizing metal ions, NAD or NADP as acceptor(GO:0016723)
0.1 0.5 GO:0030410 nicotianamine synthase activity(GO:0030410)
0.1 0.4 GO:0004512 inositol-3-phosphate synthase activity(GO:0004512)
0.1 0.2 GO:0047498 calcium-dependent phospholipase A2 activity(GO:0047498)
0.1 0.4 GO:0019904 protein domain specific binding(GO:0019904)
0.1 0.2 GO:0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity(GO:0000179)
0.0 0.2 GO:0070283 radical SAM enzyme activity(GO:0070283)
0.0 0.2 GO:0003680 AT DNA binding(GO:0003680)
0.0 0.2 GO:0016768 spermine synthase activity(GO:0016768)
0.0 0.1 GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors(GO:0016661)
0.0 0.3 GO:0010279 indole-3-acetic acid amido synthetase activity(GO:0010279)
0.0 0.1 GO:0035615 clathrin adaptor activity(GO:0035615) endocytic adaptor activity(GO:0098748)
0.0 0.4 GO:0008725 alkylbase DNA N-glycosylase activity(GO:0003905) DNA-3-methyladenine glycosylase activity(GO:0008725) DNA-3-methylbase glycosylase activity(GO:0043733)
0.0 0.1 GO:0004640 phosphoribosylanthranilate isomerase activity(GO:0004640)
0.0 0.1 GO:0016707 gibberellin 3-beta-dioxygenase activity(GO:0016707)
0.0 0.1 GO:0034432 bis(5'-adenosyl)-pentaphosphatase activity(GO:0034432)
0.0 0.1 GO:0051740 ethylene receptor activity(GO:0038199) ethylene binding(GO:0051740) alkene binding(GO:0072328)
0.0 0.3 GO:0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines(GO:0016813)
0.0 0.1 GO:0036440 citrate (Si)-synthase activity(GO:0004108) citrate synthase activity(GO:0036440)
0.0 0.2 GO:0010328 auxin influx transmembrane transporter activity(GO:0010328)
0.0 0.1 GO:0031683 G-protein coupled receptor binding(GO:0001664) G-protein beta/gamma-subunit complex binding(GO:0031683)
0.0 0.2 GO:0016308 1-phosphatidylinositol-4-phosphate 5-kinase activity(GO:0016308)
0.0 0.4 GO:0008143 poly(A) binding(GO:0008143)
0.0 0.1 GO:0004715 non-membrane spanning protein tyrosine kinase activity(GO:0004715)
0.0 0.2 GO:0070180 large ribosomal subunit rRNA binding(GO:0070180)
0.0 0.0 GO:0004042 acetyl-CoA:L-glutamate N-acetyltransferase activity(GO:0004042)
0.0 0.0 GO:0004044 amidophosphoribosyltransferase activity(GO:0004044)
0.0 0.1 GO:0004048 anthranilate phosphoribosyltransferase activity(GO:0004048)
0.0 0.1 GO:0010295 (+)-abscisic acid 8'-hydroxylase activity(GO:0010295)
0.0 0.2 GO:0009044 xylan 1,4-beta-xylosidase activity(GO:0009044) alpha-L-arabinofuranosidase activity(GO:0046556)
0.0 0.1 GO:0045549 9-cis-epoxycarotenoid dioxygenase activity(GO:0045549)
0.0 0.0 GO:0016277 [myelin basic protein]-arginine N-methyltransferase activity(GO:0016277)
0.0 0.1 GO:0017112 Rab guanyl-nucleotide exchange factor activity(GO:0017112)
0.0 0.2 GO:0051192 ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process(GO:0000036) ACP phosphopantetheine attachment site binding(GO:0044620) prosthetic group binding(GO:0051192)
0.0 0.1 GO:0000285 1-phosphatidylinositol-3-phosphate 5-kinase activity(GO:0000285) phosphatidylinositol phosphate kinase activity(GO:0016307)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 PID TCR JNK PATHWAY JNK signaling in the CD4+ TCR pathway

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 REACTOME P130CAS LINKAGE TO MAPK SIGNALING FOR INTEGRINS Genes involved in p130Cas linkage to MAPK signaling for integrins