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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT5G23280
Z-value: 0.36
Transcription factors associated with AT5G23280
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G23280
|
AT5G23280 | TCP family transcription factor |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT5G23280 | arTal_v1_Chr5_+_7842607_7842607 | 0.40 | 1.6e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_+_209208_209208 Show fit | 0.72 |
AT1G01580.1
|
ferric reduction oxidase 2 |
|
| arTal_v1_Chr1_+_208995_208995 Show fit | 0.72 |
AT1G01580.2
|
ferric reduction oxidase 2 |
|
| arTal_v1_Chr3_+_2441565_2441657 Show fit | 0.67 |
AT3G07650.4
AT3G07650.1 AT3G07650.3 AT3G07650.2 |
CONSTANS-like 9 |
|
| arTal_v1_Chr5_-_22712441_22712441 Show fit | 0.51 |
AT5G56080.1
|
nicotianamine synthase 2 |
|
| arTal_v1_Chr5_+_5205869_5205869 Show fit | 0.51 |
AT5G15950.1
|
Adenosylmethionine decarboxylase family protein |
|
| arTal_v1_Chr5_+_5206156_5206156 Show fit | 0.50 |
AT5G15950.2
|
Adenosylmethionine decarboxylase family protein |
|
| arTal_v1_Chr4_-_18472048_18472048 Show fit | 0.41 |
AT4G39800.1
|
myo-inositol-1-phosphate synthase 1 |
|
| arTal_v1_Chr4_-_11965684_11965769 Show fit | 0.39 |
AT4G22770.2
AT4G22770.1 |
AT hook motif DNA-binding family protein |
|
| arTal_v1_Chr3_-_4042075_4042075 Show fit | 0.37 |
AT3G12710.1
|
DNA glycosylase superfamily protein |
|
| arTal_v1_Chr4_-_11519805_11519805 Show fit | 0.35 |
AT4G21680.1
|
NITRATE TRANSPORTER 1.8 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G23280
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 1.5 | GO:0055072 | iron ion homeostasis(GO:0055072) |
| 0.1 | 0.7 | GO:0048579 | negative regulation of long-day photoperiodism, flowering(GO:0048579) |
| 0.1 | 0.6 | GO:0046218 | tryptophan catabolic process(GO:0006569) indolalkylamine catabolic process(GO:0046218) |
| 0.1 | 0.6 | GO:1904961 | quiescent center organization(GO:1904961) |
| 0.1 | 0.5 | GO:0030418 | nicotianamine metabolic process(GO:0030417) nicotianamine biosynthetic process(GO:0030418) tricarboxylic acid biosynthetic process(GO:0072351) |
| 0.0 | 0.5 | GO:0046520 | sphingoid biosynthetic process(GO:0046520) |
| 0.1 | 0.4 | GO:0006658 | phosphatidylserine metabolic process(GO:0006658) phosphatidylserine biosynthetic process(GO:0006659) |
| 0.1 | 0.4 | GO:0042754 | negative regulation of circadian rhythm(GO:0042754) |
| 0.0 | 0.4 | GO:1901141 | regulation of lignin biosynthetic process(GO:1901141) |
| 0.0 | 0.4 | GO:0006284 | base-excision repair(GO:0006284) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.4 | GO:0010494 | cytoplasmic stress granule(GO:0010494) |
| 0.0 | 0.2 | GO:0000312 | plastid small ribosomal subunit(GO:0000312) |
| 0.0 | 0.2 | GO:0005885 | Arp2/3 protein complex(GO:0005885) |
| 0.0 | 0.1 | GO:0030130 | clathrin coat of trans-Golgi network vesicle(GO:0030130) |
| 0.0 | 0.1 | GO:0034388 | Pwp2p-containing subcomplex of 90S preribosome(GO:0034388) |
| 0.0 | 0.1 | GO:0010330 | cellulose synthase complex(GO:0010330) |
| 0.0 | 0.1 | GO:0005677 | chromatin silencing complex(GO:0005677) |
| 0.0 | 0.1 | GO:0005834 | heterotrimeric G-protein complex(GO:0005834) |
| 0.0 | 0.1 | GO:0034515 | proteasome storage granule(GO:0034515) |
| 0.0 | 0.0 | GO:0012510 | trans-Golgi network transport vesicle membrane(GO:0012510) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.5 | GO:0016723 | ferric-chelate reductase activity(GO:0000293) oxidoreductase activity, oxidizing metal ions, NAD or NADP as acceptor(GO:0016723) |
| 0.2 | 0.5 | GO:0000170 | sphingosine hydroxylase activity(GO:0000170) |
| 0.1 | 0.5 | GO:0030410 | nicotianamine synthase activity(GO:0030410) |
| 0.1 | 0.4 | GO:0004512 | inositol-3-phosphate synthase activity(GO:0004512) |
| 0.1 | 0.4 | GO:0019904 | protein domain specific binding(GO:0019904) |
| 0.0 | 0.4 | GO:0008725 | alkylbase DNA N-glycosylase activity(GO:0003905) DNA-3-methyladenine glycosylase activity(GO:0008725) DNA-3-methylbase glycosylase activity(GO:0043733) |
| 0.0 | 0.4 | GO:0008143 | poly(A) binding(GO:0008143) |
| 0.0 | 0.3 | GO:0010279 | indole-3-acetic acid amido synthetase activity(GO:0010279) |
| 0.0 | 0.3 | GO:0016813 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines(GO:0016813) |
| 0.1 | 0.2 | GO:0047498 | calcium-dependent phospholipase A2 activity(GO:0047498) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.3 | PID TCR JNK PATHWAY | JNK signaling in the CD4+ TCR pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.3 | REACTOME P130CAS LINKAGE TO MAPK SIGNALING FOR INTEGRINS | Genes involved in p130Cas linkage to MAPK signaling for integrins |