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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT5G22990
Z-value: 1.93
Transcription factors associated with AT5G22990
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G22990
|
AT5G22990 | C2H2-like zinc finger protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT5G22990 | arTal_v1_Chr5_-_7692468_7692468 | -0.36 | 2.1e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_+_538250_538250 Show fit | 3.90 |
AT2G02120.1
|
Scorpion toxin-like knottin superfamily protein |
|
| arTal_v1_Chr5_+_21240717_21240717 Show fit | 3.53 |
AT5G52310.1
|
low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A) |
|
| arTal_v1_Chr1_-_10289666_10289666 Show fit | 3.27 |
AT1G29395.1
|
COLD REGULATED 314 INNER MEMBRANE 1 |
|
| arTal_v1_Chr1_+_209208_209208 Show fit | 2.97 |
AT1G01580.1
|
ferric reduction oxidase 2 |
|
| arTal_v1_Chr1_+_208995_208995 Show fit | 2.96 |
AT1G01580.2
|
ferric reduction oxidase 2 |
|
| arTal_v1_Chr5_-_22712441_22712441 Show fit | 2.94 |
AT5G56080.1
|
nicotianamine synthase 2 |
|
| arTal_v1_Chr3_-_82182_82182 Show fit | 2.63 |
AT3G01260.1
|
Galactose mutarotase-like superfamily protein |
|
| arTal_v1_Chr5_-_6725966_6725966 Show fit | 2.53 |
AT5G19890.1
|
Peroxidase superfamily protein |
|
| arTal_v1_Chr4_-_15954803_15954803 Show fit | 2.14 |
AT4G33070.1
|
Thiamine pyrophosphate dependent pyruvate decarboxylase family protein |
|
| arTal_v1_Chr2_-_19370478_19370478 Show fit | 2.11 |
AT2G47180.1
|
galactinol synthase 1 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G22990
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 9.0 | GO:0055072 | iron ion homeostasis(GO:0055072) |
| 0.0 | 6.0 | GO:0006412 | translation(GO:0006412) |
| 0.2 | 5.8 | GO:0006730 | one-carbon metabolic process(GO:0006730) |
| 0.4 | 5.4 | GO:0009608 | response to symbiont(GO:0009608) |
| 0.8 | 5.0 | GO:0055129 | L-proline biosynthetic process(GO:0055129) |
| 0.1 | 3.9 | GO:0042631 | cellular response to water deprivation(GO:0042631) |
| 0.9 | 3.8 | GO:0033499 | galactose catabolic process(GO:0019388) galactose catabolic process via UDP-galactose(GO:0033499) |
| 0.1 | 3.7 | GO:0010143 | cutin biosynthetic process(GO:0010143) |
| 0.1 | 3.4 | GO:0006413 | translational initiation(GO:0006413) |
| 0.7 | 2.9 | GO:0030418 | nicotianamine metabolic process(GO:0030417) nicotianamine biosynthetic process(GO:0030418) tricarboxylic acid biosynthetic process(GO:0072351) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 5.8 | GO:0000325 | plant-type vacuole(GO:0000325) |
| 0.0 | 5.7 | GO:0005802 | trans-Golgi network(GO:0005802) |
| 0.0 | 5.1 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
| 0.0 | 4.8 | GO:0005789 | endoplasmic reticulum membrane(GO:0005789) |
| 0.0 | 4.2 | GO:0022627 | cytosolic small ribosomal subunit(GO:0022627) |
| 0.8 | 3.3 | GO:0031357 | intrinsic component of plastid inner membrane(GO:0031352) integral component of plastid inner membrane(GO:0031353) intrinsic component of chloroplast inner membrane(GO:0031356) integral component of chloroplast inner membrane(GO:0031357) |
| 0.9 | 2.7 | GO:0016328 | lateral plasma membrane(GO:0016328) |
| 0.2 | 2.7 | GO:0005801 | cis-Golgi network(GO:0005801) |
| 0.4 | 2.2 | GO:0071541 | eukaryotic translation initiation factor 3 complex, eIF3m(GO:0071541) |
| 0.2 | 2.0 | GO:0005956 | protein kinase CK2 complex(GO:0005956) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 13.9 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.0 | 8.6 | GO:0004672 | protein kinase activity(GO:0004672) |
| 0.5 | 5.9 | GO:0000293 | ferric-chelate reductase activity(GO:0000293) oxidoreductase activity, oxidizing metal ions, NAD or NADP as acceptor(GO:0016723) |
| 0.0 | 5.9 | GO:0008270 | zinc ion binding(GO:0008270) |
| 0.1 | 5.4 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 1.2 | 5.0 | GO:0004350 | glutamate 5-kinase activity(GO:0004349) glutamate-5-semialdehyde dehydrogenase activity(GO:0004350) |
| 0.2 | 4.9 | GO:0005388 | calcium-transporting ATPase activity(GO:0005388) |
| 1.1 | 3.3 | GO:0004034 | aldose 1-epimerase activity(GO:0004034) |
| 0.4 | 3.3 | GO:0090447 | glycerol-3-phosphate 2-O-acyltransferase activity(GO:0090447) |
| 0.5 | 3.0 | GO:0030544 | Hsp70 protein binding(GO:0030544) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.4 | PID IL2 PI3K PATHWAY | IL2 signaling events mediated by PI3K |
| 0.1 | 1.1 | NABA CORE MATRISOME | Ensemble of genes encoding core extracellular matrix including ECM glycoproteins, collagens and proteoglycans |
| 0.1 | 0.9 | PID FANCONI PATHWAY | Fanconi anemia pathway |
| 0.1 | 0.6 | PID HDAC CLASSI PATHWAY | Signaling events mediated by HDAC Class I |
| 0.2 | 0.5 | PID RAS PATHWAY | Regulation of Ras family activation |
| 0.1 | 0.4 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.1 | 0.4 | PID BCR 5PATHWAY | BCR signaling pathway |
| 0.1 | 0.4 | PID INTEGRIN3 PATHWAY | Beta3 integrin cell surface interactions |
| 0.1 | 0.3 | PID BETA CATENIN NUC PATHWAY | Regulation of nuclear beta catenin signaling and target gene transcription |
| 0.1 | 0.3 | PID REELIN PATHWAY | Reelin signaling pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 2.5 | REACTOME INFLUENZA VIRAL RNA TRANSCRIPTION AND REPLICATION | Genes involved in Influenza Viral RNA Transcription and Replication |
| 0.1 | 1.7 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.4 | 1.2 | REACTOME MTORC1 MEDIATED SIGNALLING | Genes involved in mTORC1-mediated signalling |
| 0.2 | 1.1 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
| 0.1 | 0.9 | REACTOME PPARA ACTIVATES GENE EXPRESSION | Genes involved in PPARA Activates Gene Expression |
| 0.3 | 0.8 | REACTOME TRNA AMINOACYLATION | Genes involved in tRNA Aminoacylation |
| 0.3 | 0.8 | REACTOME NEUROTRANSMITTER RECEPTOR BINDING AND DOWNSTREAM TRANSMISSION IN THE POSTSYNAPTIC CELL | Genes involved in Neurotransmitter Receptor Binding And Downstream Transmission In The Postsynaptic Cell |
| 0.1 | 0.8 | REACTOME MEMBRANE TRAFFICKING | Genes involved in Membrane Trafficking |
| 0.2 | 0.7 | REACTOME NRAGE SIGNALS DEATH THROUGH JNK | Genes involved in NRAGE signals death through JNK |
| 0.1 | 0.6 | REACTOME POL SWITCHING | Genes involved in Polymerase switching |