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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT5G19790
Z-value: 1.18
Transcription factors associated with AT5G19790
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G19790
|
AT5G19790 | related to AP2 11 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| RAP2.11 | arTal_v1_Chr5_-_6690040_6690040 | -0.05 | 8.7e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_-_7421828_7421828 Show fit | 1.62 |
AT4G12520.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr3_+_4104463_4104463 Show fit | 1.52 |
AT3G12900.1
|
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
|
| arTal_v1_Chr5_+_4370692_4370692 Show fit | 1.52 |
AT5G13580.1
|
ABC-2 type transporter family protein |
|
| arTal_v1_Chr3_-_21097481_21097481 Show fit | 1.43 |
AT3G57010.1
|
Calcium-dependent phosphotriesterase superfamily protein |
|
| arTal_v1_Chr4_-_15954803_15954803 Show fit | 1.26 |
AT4G33070.1
|
Thiamine pyrophosphate dependent pyruvate decarboxylase family protein |
|
| arTal_v1_Chr3_-_7656053_7656053 Show fit | 1.24 |
AT3G21720.1
|
isocitrate lyase |
|
| arTal_v1_Chr5_-_2090430_2090430 Show fit | 1.23 |
AT5G06760.1
|
Late Embryogenesis Abundant 4-5 |
|
| arTal_v1_Chr5_+_1461786_1461786 Show fit | 1.18 |
AT5G04960.1
|
Plant invertase/pectin methylesterase inhibitor superfamily |
|
| arTal_v1_Chr3_+_3595694_3595694 Show fit | 1.14 |
AT3G11430.1
|
glycerol-3-phosphate acyltransferase 5 |
|
| arTal_v1_Chr1_+_3019639_3019639 Show fit | 1.13 |
AT1G09350.1
|
galactinol synthase 3 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G19790
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 3.8 | GO:0009828 | plant-type cell wall loosening(GO:0009828) |
| 0.1 | 2.7 | GO:0010345 | suberin biosynthetic process(GO:0010345) |
| 0.0 | 2.4 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 0.0 | 2.3 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.0 | 2.1 | GO:0009631 | cold acclimation(GO:0009631) |
| 0.1 | 2.0 | GO:0010315 | auxin efflux(GO:0010315) |
| 0.1 | 2.0 | GO:0048236 | plant-type spore development(GO:0048236) |
| 0.1 | 1.9 | GO:0006012 | galactose metabolic process(GO:0006012) |
| 0.5 | 1.8 | GO:0006097 | glyoxylate cycle(GO:0006097) |
| 0.1 | 1.8 | GO:0003333 | amino acid transmembrane transport(GO:0003333) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 10.2 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.0 | 4.9 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.0 | 4.8 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 1.8 | GO:0000138 | Golgi trans cisterna(GO:0000138) |
| 0.0 | 1.5 | GO:0009705 | plant-type vacuole membrane(GO:0009705) |
| 0.4 | 1.3 | GO:0009925 | basal plasma membrane(GO:0009925) basolateral plasma membrane(GO:0016323) basal part of cell(GO:0045178) |
| 0.4 | 1.2 | GO:0009514 | glyoxysome(GO:0009514) |
| 0.0 | 1.1 | GO:0005811 | lipid particle(GO:0005811) |
| 0.0 | 1.1 | GO:0090406 | pollen tube(GO:0090406) |
| 0.2 | 1.0 | GO:0034388 | Pwp2p-containing subcomplex of 90S preribosome(GO:0034388) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 2.2 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.0 | 2.2 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 0.1 | 2.0 | GO:0010329 | auxin efflux transmembrane transporter activity(GO:0010329) |
| 0.1 | 2.0 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 0.2 | 1.8 | GO:0047216 | inositol 3-alpha-galactosyltransferase activity(GO:0047216) |
| 0.0 | 1.8 | GO:0000295 | adenine nucleotide transmembrane transporter activity(GO:0000295) |
| 0.2 | 1.7 | GO:0010436 | carotenoid dioxygenase activity(GO:0010436) |
| 0.0 | 1.6 | GO:0033612 | receptor serine/threonine kinase binding(GO:0033612) |
| 0.0 | 1.5 | GO:0004190 | aspartic-type endopeptidase activity(GO:0004190) |
| 0.1 | 1.4 | GO:0016844 | strictosidine synthase activity(GO:0016844) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 0.8 | PID MYC PATHWAY | C-MYC pathway |
| 0.2 | 0.5 | SA CASPASE CASCADE | Apoptosis is mediated by caspases, cysteine proteases arranged in a proteolytic cascade. |
| 0.1 | 0.5 | PID UPA UPAR PATHWAY | Urokinase-type plasminogen activator (uPA) and uPAR-mediated signaling |
| 0.1 | 0.5 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.1 | 0.5 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
| 0.0 | 0.4 | PID FANCONI PATHWAY | Fanconi anemia pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.9 | REACTOME ACTIVATION OF THE MRNA UPON BINDING OF THE CAP BINDING COMPLEX AND EIFS AND SUBSEQUENT BINDING TO 43S | Genes involved in Activation of the mRNA upon binding of the cap-binding complex and eIFs, and subsequent binding to 43S |
| 0.2 | 0.8 | REACTOME RECRUITMENT OF MITOTIC CENTROSOME PROTEINS AND COMPLEXES | Genes involved in Recruitment of mitotic centrosome proteins and complexes |
| 0.1 | 0.7 | REACTOME ANTIVIRAL MECHANISM BY IFN STIMULATED GENES | Genes involved in Antiviral mechanism by IFN-stimulated genes |
| 0.2 | 0.5 | REACTOME PRE NOTCH EXPRESSION AND PROCESSING | Genes involved in Pre-NOTCH Expression and Processing |
| 0.0 | 0.4 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.1 | 0.3 | REACTOME P130CAS LINKAGE TO MAPK SIGNALING FOR INTEGRINS | Genes involved in p130Cas linkage to MAPK signaling for integrins |
| 0.0 | 0.3 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.0 | 0.2 | REACTOME PHASE II CONJUGATION | Genes involved in Phase II conjugation |
| 0.0 | 0.2 | REACTOME RNA POL II TRANSCRIPTION PRE INITIATION AND PROMOTER OPENING | Genes involved in RNA Polymerase II Transcription Pre-Initiation And Promoter Opening |
| 0.0 | 0.1 | REACTOME FATTY ACID TRIACYLGLYCEROL AND KETONE BODY METABOLISM | Genes involved in Fatty acid, triacylglycerol, and ketone body metabolism |