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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT5G18450
Z-value: 1.30
Transcription factors associated with AT5G18450
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G18450
|
AT5G18450 | Integrase-type DNA-binding superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT5G18450 | arTal_v1_Chr5_-_6117041_6117041 | 0.54 | 4.6e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_+_6130025_6130025 Show fit | 1.93 |
AT1G17810.1
|
beta-tonoplast intrinsic protein |
|
| arTal_v1_Chr1_+_1244947_1244947 Show fit | 1.75 |
AT1G04560.1
|
AWPM-19-like family protein |
|
| arTal_v1_Chr3_-_17441242_17441242 Show fit | 1.60 |
AT3G47340.3
AT3G47340.2 |
glutamine-dependent asparagine synthase 1 |
|
| arTal_v1_Chr5_+_26772644_26772644 Show fit | 1.60 |
AT5G67080.1
|
mitogen-activated protein kinase kinase kinase 19 |
|
| arTal_v1_Chr3_-_17441431_17441431 Show fit | 1.59 |
AT3G47340.1
|
glutamine-dependent asparagine synthase 1 |
|
| arTal_v1_Chr3_-_12451556_12451556 Show fit | 1.56 |
AT3G30775.2
AT3G30775.1 |
Methylenetetrahydrofolate reductase family protein |
|
| arTal_v1_Chr3_-_17440176_17440176 Show fit | 1.49 |
AT3G47340.4
|
glutamine-dependent asparagine synthase 1 |
|
| arTal_v1_Chr5_-_17831336_17831336 Show fit | 1.40 |
AT5G44260.1
|
Zinc finger C-x8-C-x5-C-x3-H type family protein |
|
| arTal_v1_Chr5_-_3172701_3172701 Show fit | 1.40 |
AT5G10130.1
|
Pollen Ole e 1 allergen and extensin family protein |
|
| arTal_v1_Chr2_+_13722362_13722427 Show fit | 1.39 |
AT2G32300.2
AT2G32300.1 |
uclacyanin 1 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G18450
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 8.6 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.8 | 4.7 | GO:0070981 | cellular response to sucrose starvation(GO:0043617) L-asparagine biosynthetic process(GO:0070981) L-asparagine metabolic process(GO:0070982) |
| 0.1 | 4.1 | GO:0009873 | ethylene-activated signaling pathway(GO:0009873) |
| 0.0 | 4.0 | GO:0010200 | response to chitin(GO:0010200) |
| 0.0 | 3.8 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.0 | 2.7 | GO:0009753 | response to jasmonic acid(GO:0009753) |
| 0.1 | 2.1 | GO:0003333 | amino acid transmembrane transport(GO:0003333) |
| 0.1 | 1.9 | GO:0042343 | indole glucosinolate metabolic process(GO:0042343) |
| 0.0 | 1.8 | GO:0009834 | plant-type secondary cell wall biogenesis(GO:0009834) |
| 0.1 | 1.6 | GO:0006560 | proline metabolic process(GO:0006560) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 16.7 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 8.8 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.0 | 2.7 | GO:0005615 | extracellular space(GO:0005615) |
| 0.3 | 2.1 | GO:0031588 | nucleotide-activated protein kinase complex(GO:0031588) |
| 0.5 | 1.4 | GO:0009514 | glyoxysome(GO:0009514) |
| 0.3 | 1.0 | GO:0016323 | basal plasma membrane(GO:0009925) basolateral plasma membrane(GO:0016323) basal part of cell(GO:0045178) |
| 0.1 | 0.9 | GO:0000322 | storage vacuole(GO:0000322) protein storage vacuole(GO:0000326) |
| 0.1 | 0.7 | GO:0030139 | endocytic vesicle(GO:0030139) |
| 0.1 | 0.7 | GO:0005742 | mitochondrial outer membrane translocase complex(GO:0005742) |
| 0.0 | 0.7 | GO:0005811 | lipid particle(GO:0005811) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 4.8 | GO:0009055 | electron carrier activity(GO:0009055) |
| 0.7 | 4.7 | GO:0004066 | asparagine synthase (glutamine-hydrolyzing) activity(GO:0004066) |
| 0.1 | 4.1 | GO:0030599 | pectinesterase activity(GO:0030599) |
| 0.2 | 3.6 | GO:0005199 | structural constituent of cell wall(GO:0005199) |
| 0.1 | 2.6 | GO:0015174 | basic amino acid transmembrane transporter activity(GO:0015174) |
| 0.0 | 2.5 | GO:0019901 | protein kinase binding(GO:0019901) |
| 0.5 | 2.1 | GO:1901982 | disaccharide binding(GO:0048030) maltose binding(GO:1901982) |
| 0.1 | 2.1 | GO:0016645 | oxidoreductase activity, acting on the CH-NH group of donors(GO:0016645) |
| 0.0 | 1.9 | GO:0004190 | aspartic-type endopeptidase activity(GO:0004190) |
| 0.1 | 1.7 | GO:0009044 | xylan 1,4-beta-xylosidase activity(GO:0009044) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.6 | PID CXCR4 PATHWAY | CXCR4-mediated signaling events |
| 0.1 | 0.4 | PID ATM PATHWAY | ATM pathway |
| 0.1 | 0.3 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.0 | 0.1 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.9 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.1 | 0.6 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
| 0.0 | 0.4 | REACTOME MEIOTIC RECOMBINATION | Genes involved in Meiotic Recombination |
| 0.0 | 0.2 | REACTOME INNATE IMMUNE SYSTEM | Genes involved in Innate Immune System |
| 0.0 | 0.1 | REACTOME INTEGRATION OF ENERGY METABOLISM | Genes involved in Integration of energy metabolism |
| 0.0 | 0.1 | REACTOME PI METABOLISM | Genes involved in PI Metabolism |
| 0.0 | 0.0 | REACTOME MEIOSIS | Genes involved in Meiosis |