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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT5G18270
Z-value: 0.41
Transcription factors associated with AT5G18270
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G18270
|
AT5G18270 | NAC domain containing protein 87 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| ANAC087 | arTal_v1_Chr5_-_6042938_6043014 | -0.30 | 3.0e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_-_21992812_21992814 Show fit | 0.66 |
AT5G54190.2
AT5G54190.1 |
protochlorophyllide oxidoreductase A |
|
| arTal_v1_Chr3_+_8918679_8918679 Show fit | 0.35 |
AT3G24500.2
|
multiprotein bridging factor 1C |
|
| arTal_v1_Chr1_-_10475969_10475969 Show fit | 0.34 |
AT1G29920.1
|
chlorophyll A/B-binding protein 2 |
|
| arTal_v1_Chr2_-_12343443_12343443 Show fit | 0.33 |
AT2G28780.1
|
P-hydroxybenzoic acid efflux pump subunit |
|
| arTal_v1_Chr5_-_2090430_2090430 Show fit | 0.33 |
AT5G06760.1
|
Late Embryogenesis Abundant 4-5 |
|
| arTal_v1_Chr3_+_8918267_8918267 Show fit | 0.32 |
AT3G24500.1
|
multiprotein bridging factor 1C |
|
| arTal_v1_Chr4_-_18472048_18472048 Show fit | 0.32 |
AT4G39800.1
|
myo-inositol-1-phosphate synthase 1 |
|
| arTal_v1_Chr1_+_27538190_27538190 Show fit | 0.31 |
AT1G73220.1
|
organic cation/carnitine transporter1 |
|
| arTal_v1_Chr4_+_10521259_10521379 Show fit | 0.30 |
AT4G19230.1
AT4G19230.2 |
cytochrome P450, family 707, subfamily A, polypeptide 1 |
|
| arTal_v1_Chr5_-_8406132_8406151 Show fit | 0.29 |
AT5G24570.1
AT5G24575.1 |
hypothetical protein hypothetical protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G18270
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.7 | GO:0009647 | skotomorphogenesis(GO:0009647) |
| 0.0 | 0.5 | GO:0019761 | S-glycoside biosynthetic process(GO:0016144) glycosinolate biosynthetic process(GO:0019758) glucosinolate biosynthetic process(GO:0019761) |
| 0.0 | 0.4 | GO:0009750 | response to fructose(GO:0009750) |
| 0.1 | 0.3 | GO:0006659 | phosphatidylserine metabolic process(GO:0006658) phosphatidylserine biosynthetic process(GO:0006659) |
| 0.1 | 0.3 | GO:0015696 | ammonium transport(GO:0015696) |
| 0.1 | 0.3 | GO:0097438 | release of seed from dormancy(GO:0048838) exit from dormancy(GO:0097438) |
| 0.1 | 0.3 | GO:0006788 | heme oxidation(GO:0006788) |
| 0.0 | 0.3 | GO:0055129 | L-proline biosynthetic process(GO:0055129) |
| 0.0 | 0.3 | GO:0009061 | anaerobic respiration(GO:0009061) |
| 0.0 | 0.3 | GO:1901642 | nucleoside transmembrane transport(GO:1901642) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.2 | GO:0016272 | prefoldin complex(GO:0016272) |
| 0.0 | 0.2 | GO:0009368 | endopeptidase Clp complex(GO:0009368) |
| 0.0 | 0.2 | GO:0005793 | endoplasmic reticulum-Golgi intermediate compartment(GO:0005793) |
| 0.0 | 0.2 | GO:0009508 | plastid chromosome(GO:0009508) |
| 0.0 | 0.2 | GO:0031012 | extracellular matrix(GO:0031012) |
| 0.0 | 0.1 | GO:0030093 | chloroplast photosystem I(GO:0030093) |
| 0.0 | 0.1 | GO:0005775 | vacuolar lumen(GO:0005775) |
| 0.0 | 0.1 | GO:0009897 | external side of plasma membrane(GO:0009897) |
| 0.0 | 0.1 | GO:0005814 | centrosome(GO:0005813) centriole(GO:0005814) |
| 0.0 | 0.1 | GO:0000812 | Swr1 complex(GO:0000812) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.9 | GO:0003713 | transcription coactivator activity(GO:0003713) |
| 0.2 | 0.7 | GO:0016630 | protochlorophyllide reductase activity(GO:0016630) |
| 0.1 | 0.3 | GO:0008519 | ammonium transmembrane transporter activity(GO:0008519) |
| 0.1 | 0.3 | GO:0004512 | inositol-3-phosphate synthase activity(GO:0004512) |
| 0.1 | 0.3 | GO:0004349 | glutamate 5-kinase activity(GO:0004349) glutamate-5-semialdehyde dehydrogenase activity(GO:0004350) |
| 0.1 | 0.3 | GO:0010295 | (+)-abscisic acid 8'-hydroxylase activity(GO:0010295) |
| 0.0 | 0.3 | GO:0016984 | ribulose-bisphosphate carboxylase activity(GO:0016984) |
| 0.0 | 0.3 | GO:0004392 | heme oxygenase (decyclizing) activity(GO:0004392) |
| 0.0 | 0.3 | GO:0005199 | structural constituent of cell wall(GO:0005199) |
| 0.0 | 0.3 | GO:0016168 | chlorophyll binding(GO:0016168) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.1 | PID P53 REGULATION PATHWAY | p53 pathway |
| 0.0 | 0.1 | PID HIF2PATHWAY | HIF-2-alpha transcription factor network |
| 0.0 | 0.1 | SIG REGULATION OF THE ACTIN CYTOSKELETON BY RHO GTPASES | Genes related to regulation of the actin cytoskeleton |
| 0.0 | 0.0 | PID RAS PATHWAY | Regulation of Ras family activation |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.1 | REACTOME SIGNALING BY ROBO RECEPTOR | Genes involved in Signaling by Robo receptor |
| 0.0 | 0.1 | REACTOME ABACAVIR TRANSPORT AND METABOLISM | Genes involved in Abacavir transport and metabolism |
| 0.0 | 0.1 | REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT | Genes involved in Lipid digestion, mobilization, and transport |
| 0.0 | 0.1 | REACTOME PYRUVATE METABOLISM AND CITRIC ACID TCA CYCLE | Genes involved in Pyruvate metabolism and Citric Acid (TCA) cycle |
| 0.0 | 0.1 | REACTOME ANTIVIRAL MECHANISM BY IFN STIMULATED GENES | Genes involved in Antiviral mechanism by IFN-stimulated genes |
| 0.0 | 0.1 | REACTOME RNA POL II PRE TRANSCRIPTION EVENTS | Genes involved in RNA Polymerase II Pre-transcription Events |
| 0.0 | 0.0 | REACTOME INTEGRATION OF ENERGY METABOLISM | Genes involved in Integration of energy metabolism |
| 0.0 | 0.0 | REACTOME LATE PHASE OF HIV LIFE CYCLE | Genes involved in Late Phase of HIV Life Cycle |