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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT5G18270
Z-value: 0.41
Transcription factors associated with AT5G18270
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G18270
|
AT5G18270 | NAC domain containing protein 87 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| ANAC087 | arTal_v1_Chr5_-_6042938_6043014 | -0.30 | 3.0e-01 | Click! |
Activity profile of AT5G18270 motif
Sorted Z-values of AT5G18270 motif
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| Chr5_-_21992812 | 0.66 |
AT5G54190.2
AT5G54190.1 |
PORA
|
protochlorophyllide oxidoreductase A |
| Chr3_+_8918679 | 0.35 |
AT3G24500.2
|
MBF1C
|
multiprotein bridging factor 1C |
| Chr1_-_10475969 | 0.34 |
AT1G29920.1
|
CAB2
|
chlorophyll A/B-binding protein 2 |
| Chr2_-_12343443 | 0.33 |
AT2G28780.1
|
AT2G28780
|
P-hydroxybenzoic acid efflux pump subunit |
| Chr5_-_2090430 | 0.33 |
AT5G06760.1
|
LEA4-5
|
Late Embryogenesis Abundant 4-5 |
| Chr3_+_8918267 | 0.32 |
AT3G24500.1
|
MBF1C
|
multiprotein bridging factor 1C |
| Chr4_-_18472048 | 0.32 |
AT4G39800.1
|
MIPS1
|
myo-inositol-1-phosphate synthase 1 |
| Chr1_+_27538190 | 0.31 |
AT1G73220.1
|
OCT1
|
organic cation/carnitine transporter1 |
| Chr4_+_10521259 | 0.30 |
AT4G19230.1
AT4G19230.2 |
CYP707A1
|
cytochrome P450, family 707, subfamily A, polypeptide 1 |
| Chr5_-_8406132 | 0.29 |
AT5G24570.1
AT5G24575.1 |
AT5G24570
AT5G24575
|
hypothetical protein hypothetical protein |
| Chr1_-_10399873 | 0.29 |
AT1G29720.1
|
AT1G29720
|
Leucine-rich repeat transmembrane protein kinase |
| Chr1_+_6763765 | 0.28 |
AT1G19530.1
AT1G19530.2 |
AT1G19530
|
DNA polymerase epsilon catalytic subunit A |
| Chr1_-_21630118 | 0.27 |
AT1G58300.1
|
HO4
|
heme oxygenase 4 |
| Chr4_-_7992429 | 0.27 |
AT4G13770.1
|
CYP83A1
|
cytochrome P450, family 83, subfamily A, polypeptide 1 |
| Chr1_+_22031343 | 0.26 |
AT1G59860.1
|
AT1G59860
|
HSP20-like chaperones superfamily protein |
| Chr4_+_12524186 | 0.25 |
AT4G24120.1
|
YSL1
|
YELLOW STRIPE like 1 |
| Chr4_+_994726 | 0.24 |
AT4G02280.1
|
SUS3
|
sucrose synthase 3 |
| Chr5_-_17626487 | 0.23 |
AT5G43840.1
|
HSFA6A
|
heat shock transcription factor A6A |
| Chr3_+_17567126 | 0.22 |
AT3G47640.2
AT3G47640.3 |
PYE
|
basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| Chr1_-_27340044 | 0.22 |
AT1G72610.1
|
GER1
|
germin-like protein 1 |
| Chr4_+_8827600 | 0.22 |
AT4G15430.2
AT4G15430.1 |
AT4G15430
|
ERD (early-responsive to dehydration stress) family protein |
| Chr5_-_18189523 | 0.22 |
AT5G45070.1
|
PP2-A8
|
phloem protein 2-A8 |
| Chr1_-_59215 | 0.21 |
AT1G01120.1
|
KCS1
|
3-ketoacyl-CoA synthase 1 |
| Chr5_-_15201168 | 0.21 |
AT5G38100.4
AT5G38100.1 AT5G38100.2 |
AT5G38100
|
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
| Chr5_+_24772326 | 0.20 |
AT5G61620.1
|
AT5G61620
|
myb-like transcription factor family protein |
| Chr5_+_1536057 | 0.20 |
AT5G05180.2
AT5G05180.1 AT5G05180.3 |
AT5G05180
|
myosin heavy chain, striated protein |
| Chr5_+_25721733 | 0.20 |
AT5G64310.1
|
AGP1
|
arabinogalactan protein 1 |
| Chr3_-_20813046 | 0.20 |
AT3G56080.2
AT3G56080.1 |
AT3G56080
|
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
| Chr2_+_14936565 | 0.20 |
AT2G35585.2
AT2G35585.1 |
AT2G35585
|
cystic fibrosis transmembrane conductance regulator |
| Chr5_-_22491266 | 0.20 |
AT5G55520.1
AT5G55520.2 |
AT5G55520
|
kinesin-like protein |
| Chr3_+_17567476 | 0.20 |
AT3G47640.1
|
PYE
|
basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| Chr3_-_10590685 | 0.19 |
AT3G28340.1
|
GATL10
|
galacturonosyltransferase-like 10 |
| Chr3_-_1136397 | 0.19 |
AT3G04290.1
|
LTL1
|
Li-tolerant lipase 1 |
| Chr2_-_15797059 | 0.19 |
AT2G37660.1
|
AT2G37660
|
NAD(P)-binding Rossmann-fold superfamily protein |
| Chr4_+_2189515 | 0.19 |
AT4G04410.1
|
AT4G04410
|
|
| Chr3_+_20296130 | 0.19 |
AT3G54810.2
|
BME3
|
Plant-specific GATA-type zinc finger transcription factor family protein |
| Chr2_-_8088302 | 0.19 |
AT2G18650.1
|
MEE16
|
RING/U-box superfamily protein |
| Chr3_+_20296416 | 0.18 |
AT3G54810.1
|
BME3
|
Plant-specific GATA-type zinc finger transcription factor family protein |
| Chr1_-_20598675 | 0.18 |
AT1G55210.2
AT1G55210.1 |
AT1G55210
|
Disease resistance-responsive (dirigent-like protein) family protein |
| Chr5_+_19116719 | 0.18 |
AT5G47060.1
AT5G47060.2 |
AT5G47060
|
hypothetical protein (DUF581) |
| Chr1_+_18546086 | 0.18 |
AT1G50050.2
AT1G50050.1 |
AT1G50050
|
CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein |
| Chr1_+_18342451 | 0.17 |
AT1G49560.1
AT1G49560.2 |
AT1G49560
|
Homeodomain-like superfamily protein |
| Chr4_+_2289902 | 0.17 |
AT4G04570.2
AT4G04570.1 |
CRK40
|
cysteine-rich RLK (RECEPTOR-like protein kinase) 40 |
| Chr3_+_17228642 | 0.17 |
AT3G46780.1
|
PTAC16
|
plastid transcriptionally active 16 |
| Chr4_+_4886962 | 0.17 |
AT4G08040.1
|
ACS11
|
1-aminocyclopropane-1-carboxylate synthase 11 |
| Chr3_-_23195917 | 0.17 |
AT3G62700.1
|
ABCC14
|
multidrug resistance-associated protein 10 |
| Chr2_-_12702443 | 0.17 |
AT2G29720.1
|
CTF2B
|
FAD/NAD(P)-binding oxidoreductase family protein |
| Chr4_-_13112482 | 0.17 |
AT4G25750.1
|
ABCG4
|
ABC-2 type transporter family protein |
| Chr4_-_12346051 | 0.17 |
AT4G23700.1
|
CHX17
|
cation/H+ exchanger 17 |
| Chr1_+_23778255 | 0.17 |
AT1G64065.1
|
AT1G64065
|
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family |
| Chr4_-_12345652 | 0.16 |
AT4G23700.2
|
CHX17
|
cation/H+ exchanger 17 |
| Chr1_+_2848149 | 0.16 |
AT1G08890.1
|
AT1G08890
|
Major facilitator superfamily protein |
| Chr1_+_10371675 | 0.16 |
AT1G29660.1
|
AT1G29660
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
| Chr4_+_2288616 | 0.16 |
AT4G04570.3
|
CRK40
|
cysteine-rich RLK (RECEPTOR-like protein kinase) 40 |
| Chr1_+_27628678 | 0.16 |
AT1G73480.1
|
AT1G73480
|
alpha/beta-Hydrolases superfamily protein |
| Chr5_-_25813620 | 0.16 |
AT5G64570.3
AT5G64570.2 AT5G64570.1 |
XYL4
|
beta-D-xylosidase 4 |
| Chr3_+_5166175 | 0.16 |
AT3G15350.2
AT3G15350.1 |
AT3G15350
|
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein |
| Chr5_+_3550300 | 0.16 |
AT5G11160.1
AT5G11160.2 |
APT5
|
adenine phosphoribosyltransferase 5 |
| Chr3_+_23211287 | 0.15 |
AT3G62740.2
AT3G62740.1 |
BGLU7
|
beta glucosidase 7 |
| Chr4_+_10896579 | 0.15 |
AT4G20170.1
|
GALS3
|
glycosyltransferase family protein (DUF23) |
| Chr5_+_16815310 | 0.15 |
AT5G42050.1
|
AT5G42050
|
DCD (Development and Cell Death) domain protein |
| Chr1_-_30280359 | 0.15 |
AT1G80530.1
|
AT1G80530
|
Major facilitator superfamily protein |
| Chr1_+_9259750 | 0.15 |
AT1G26770.2
|
EXPA10
|
expansin A10 |
| Chr5_+_1767630 | 0.15 |
AT5G05870.1
|
UGT76C1
|
UDP-glucosyl transferase 76C1 |
| Chr5_+_7703041 | 0.15 |
AT5G23010.2
AT5G23010.1 AT5G23010.3 |
MAM1
|
methylthioalkylmalate synthase 1 |
| Chr1_+_26597067 | 0.15 |
AT1G70550.2
AT1G70550.1 |
AT1G70550
|
NEP-interacting protein, putative (DUF239) |
| Chr3_-_2264721 | 0.15 |
AT3G07150.1
|
AT3G07150
|
amino acid-ligase |
| Chr1_-_25049424 | 0.15 |
AT1G67090.2
|
RBCS1A
|
ribulose bisphosphate carboxylase small chain 1A |
| Chr5_+_23701392 | 0.15 |
AT5G58660.1
AT5G58660.2 |
AT5G58660
|
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
| Chr1_-_25049667 | 0.15 |
AT1G67090.1
|
RBCS1A
|
ribulose bisphosphate carboxylase small chain 1A |
| Chr3_-_18817405 | 0.15 |
AT3G50660.1
AT3G50660.2 |
DWF4
|
Cytochrome P450 superfamily protein |
| Chr1_-_17706460 | 0.14 |
AT1G48000.1
|
MYB112
|
myb domain protein 112 |
| Chr5_+_18945543 | 0.14 |
AT5G46690.2
AT5G46690.1 |
bHLH071
|
beta HLH protein 71 |
| Chr1_-_28554810 | 0.14 |
AT1G76100.1
AT1G76100.2 |
PETE1
|
plastocyanin 1 |
| Chr5_+_9261479 | 0.14 |
AT5G26570.1
AT5G26570.2 |
PWD
|
chloroplastidic phosphoglucan, water dikinase (ATGWD3) |
| Chr5_-_577176 | 0.14 |
AT5G02570.1
|
AT5G02570
|
Histone superfamily protein |
| Chr5_-_21724642 | 0.14 |
AT5G53490.3
AT5G53490.2 AT5G53490.1 AT5G53490.4 |
AT5G53490
|
Tetratricopeptide repeat (TPR)-like superfamily protein |
| Chr5_+_6445245 | 0.14 |
AT5G19170.1
|
AT5G19170
|
NEP-interacting protein, putative (DUF239) |
| Chr4_+_222289 | 0.14 |
AT4G00490.1
|
BAM2
|
beta-amylase 2 |
| Chr2_-_9743467 | 0.14 |
AT2G22890.1
|
AT2G22890
|
Kua-ubiquitin conjugating enzyme hybrid localization domain-containing protein |
| Chr2_-_521707 | 0.14 |
AT2G02080.4
AT2G02080.2 AT2G02080.5 AT2G02080.6 AT2G02080.3 AT2G02080.1 |
IDD4
|
indeterminate(ID)-domain 4 |
| Chr3_+_17629530 | 0.14 |
AT3G47790.2
AT3G47790.1 AT3G47790.3 |
ABCA8
|
ABC2 homolog 7 |
| Chr1_+_9259432 | 0.14 |
AT1G26770.1
|
EXPA10
|
expansin A10 |
| Chr4_+_585598 | 0.13 |
AT4G01430.1
AT4G01430.2 AT4G01430.3 |
UMAMIT29
|
nodulin MtN21 /EamA-like transporter family protein |
| Chr1_+_23144385 | 0.13 |
AT1G62520.1
|
AT1G62520
|
sulfated surface-like glycoprotein |
| Chr1_-_29239484 | 0.13 |
AT1G77760.1
|
NIA1
|
nitrate reductase 1 |
| Chr1_-_27214688 | 0.13 |
AT1G72280.1
|
ERO1
|
endoplasmic reticulum oxidoreductins 1 |
| Chr3_-_19082613 | 0.13 |
AT3G51410.1
|
AT3G51410
|
hypothetical protein (DUF241) |
| Chr4_-_17331697 | 0.13 |
AT4G36770.1
|
AT4G36770
|
UDP-Glycosyltransferase superfamily protein |
| Chr2_+_17057388 | 0.13 |
AT2G40880.1
|
CYSA
|
cystatin A |
| Chr1_+_20516916 | 0.13 |
AT1G55010.1
AT1G55010.2 |
PDF1.5
|
plant defensin 1.5 |
| Chr1_-_29869784 | 0.13 |
AT1G79410.1
|
OCT5
|
organic cation/carnitine transporter5 |
| Chr1_-_3518035 | 0.13 |
AT1G10640.1
|
AT1G10640
|
Pectin lyase-like superfamily protein |
| Chr2_+_7382805 | 0.13 |
AT2G16990.2
AT2G16990.5 AT2G16990.4 AT2G16990.3 AT2G16990.1 AT2G16990.7 AT2G16990.6 AT2G16990.8 |
AT2G16990
|
Major facilitator superfamily protein |
| Chr1_+_7423704 | 0.13 |
AT1G21210.1
|
WAK4
|
wall associated kinase 4 |
| Chr5_-_1293723 | 0.13 |
AT5G04530.1
|
KCS19
|
3-ketoacyl-CoA synthase 19 |
| Chr3_-_20629295 | 0.13 |
AT3G55610.1
|
P5CS2
|
delta 1-pyrroline-5-carboxylate synthase 2 |
| Chr1_+_26329863 | 0.13 |
AT1G69910.1
|
AT1G69910
|
Protein kinase superfamily protein |
| Chr4_+_12660687 | 0.13 |
AT4G24510.1
|
CER2
|
HXXXD-type acyl-transferase family protein |
| Chr5_-_4743512 | 0.13 |
AT5G14700.2
AT5G14700.1 |
AT5G14700
|
NAD(P)-binding Rossmann-fold superfamily protein |
| Chr3_-_343912 | 0.13 |
AT3G02020.1
|
AK3
|
aspartate kinase 3 |
| Chr4_+_13177356 | 0.13 |
AT4G25960.1
|
ABCB2
|
P-glycoprotein 2 |
| Chr1_-_21338756 | 0.13 |
AT1G57610.3
AT1G57610.4 |
AT1G57610
|
calcium uniporter (DUF607) |
| Chr3_+_8603212 | 0.13 |
AT3G23820.1
|
GAE6
|
UDP-D-glucuronate 4-epimerase 6 |
| Chr2_-_18129841 | 0.13 |
AT2G43745.1
|
AT2G43745
|
jacalin lectin-like protein |
| Chr1_-_23286797 | 0.13 |
AT1G62870.1
|
AT1G62870
|
hypothetical protein |
| Chr3_-_2175686 | 0.13 |
AT3G06880.1
AT3G06880.5 AT3G06880.4 AT3G06880.3 AT3G06880.2 |
AT3G06880
|
Transducin/WD40 repeat-like superfamily protein |
| Chr1_+_24929887 | 0.13 |
AT1G66820.1
|
AT1G66820
|
glycine-rich protein |
| Chr3_+_9306776 | 0.13 |
AT3G25600.1
|
AT3G25600
|
Calcium-binding EF-hand family protein |
| Chr5_-_6842946 | 0.13 |
AT5G20270.1
|
HHP1
|
heptahelical transmembrane protein1 |
| Chr3_+_9475350 | 0.13 |
AT3G25890.2
AT3G25890.1 |
CRF11
|
Integrase-type DNA-binding superfamily protein |
| Chr5_-_10092686 | 0.13 |
AT5G28080.7
AT5G28080.1 AT5G28080.6 AT5G28080.2 AT5G28080.5 AT5G28080.3 AT5G28080.4 AT5G28080.8 |
WNK9
|
Protein kinase superfamily protein |
| Chr1_-_20803449 | 0.13 |
AT1G55670.1
|
PSAG
|
photosystem I subunit G |
| Chr1_+_18305445 | 0.13 |
AT1G49450.1
|
AT1G49450
|
Transducin/WD40 repeat-like superfamily protein |
| Chr3_+_21893812 | 0.12 |
AT3G59220.1
|
PRN
|
pirin |
| Chr4_-_2634917 | 0.12 |
AT4G05120.2
|
FUR1
|
Major facilitator superfamily protein |
| Chr1_+_28829243 | 0.12 |
AT1G76800.1
|
AT1G76800
|
Vacuolar iron transporter (VIT) family protein |
| Chr1_-_21339034 | 0.12 |
AT1G57610.1
AT1G57610.2 |
AT1G57610
|
calcium uniporter (DUF607) |
| Chr4_-_2635143 | 0.12 |
AT4G05120.1
|
FUR1
|
Major facilitator superfamily protein |
| Chr4_+_14866763 | 0.12 |
AT4G30400.1
|
AT4G30400
|
RING/U-box superfamily protein |
| Chr3_+_22670729 | 0.12 |
AT3G61250.1
|
MYB17
|
myb domain protein 17 |
| Chr4_+_2618372 | 0.12 |
AT4G05100.1
|
MYB74
|
myb domain protein 74 |
| Chr1_-_5648114 | 0.12 |
AT1G16515.2
|
AT1G16515
|
transmembrane protein |
| Chr1_-_3239554 | 0.12 |
AT1G09940.1
|
HEMA2
|
Glutamyl-tRNA reductase family protein |
| Chr1_-_29684161 | 0.12 |
AT1G78940.2
AT1G78940.3 |
AT1G78940
|
kinase with adenine nucleotide alpha hydrolases-like domain-containing protein |
| Chr4_-_15275404 | 0.12 |
AT4G31500.1
|
CYP83B1
|
cytochrome P450, family 83, subfamily B, polypeptide 1 |
| Chr3_-_20629093 | 0.12 |
AT3G55610.2
|
P5CS2
|
delta 1-pyrroline-5-carboxylate synthase 2 |
| Chr5_-_21098959 | 0.12 |
AT5G51920.1
|
AT5G51920
|
Pyridoxal phosphate (PLP)-dependent transferases superfamily protein |
| Chr1_-_26800483 | 0.12 |
AT1G71040.1
|
LPR2
|
Cupredoxin superfamily protein |
| Chr1_+_23911024 | 0.12 |
AT1G64390.1
|
GH9C2
|
glycosyl hydrolase 9C2 |
| Chr3_-_595755 | 0.12 |
AT3G02750.3
|
AT3G02750
|
Protein phosphatase 2C family protein |
| Chr1_-_26770175 | 0.12 |
AT1G71000.1
AT1G71000.2 |
AT1G71000
|
Chaperone DnaJ-domain superfamily protein |
| Chr4_+_18409846 | 0.12 |
AT4G39670.1
|
AT4G39670
|
Glycolipid transfer protein (GLTP) family protein |
| Chr2_+_12053542 | 0.12 |
AT2G28270.1
|
AT2G28270
|
Cysteine/Histidine-rich C1 domain family protein |
| Chr4_+_10953540 | 0.12 |
AT4G20280.1
|
TAF11
|
TBP-associated factor 11 |
| Chr4_+_8917260 | 0.12 |
AT4G15630.1
|
AT4G15630
|
Uncharacterized protein family (UPF0497) |
| Chr4_-_18293512 | 0.12 |
AT4G39340.1
|
EC1.4
|
Egg cell-secreted-like protein (DUF1278) |
| Chr5_-_15200868 | 0.12 |
AT5G38100.3
|
AT5G38100
|
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
| Chr5_-_7007502 | 0.12 |
AT5G20700.1
|
AT5G20700
|
senescence-associated family protein, putative (DUF581) |
| Chr5_+_21962570 | 0.12 |
AT5G54130.2
AT5G54130.3 AT5G54130.4 |
AT5G54130
|
Calcium-binding endonuclease/exonuclease/phosphatase family |
| Chr5_-_23289635 | 0.12 |
AT5G57510.1
|
AT5G57510
|
cotton fiber protein |
| Chr1_+_12346138 | 0.11 |
AT1G33960.2
AT1G33960.1 |
AIG1
|
P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| Chr3_+_5676749 | 0.11 |
AT3G16660.2
AT3G16660.1 |
AT3G16660
|
Pollen Ole e 1 allergen and extensin family protein |
| Chr1_-_26231375 | 0.11 |
AT1G69730.1
|
AT1G69730
|
Wall-associated kinase family protein |
| Chr4_+_11663186 | 0.11 |
AT4G22010.1
|
sks4
|
SKU5 similar 4 |
| Chr5_-_26424653 | 0.11 |
AT5G66080.2
|
AT5G66080
|
Protein phosphatase 2C family protein |
| Chr1_+_29508951 | 0.11 |
AT1G78430.1
|
RIP4
|
ROP interactive partner 2 |
| Chr2_-_15664012 | 0.11 |
AT2G37300.1
AT2G37300.5 AT2G37300.4 AT2G37300.6 |
ABCI16
|
transmembrane protein |
| Chr3_-_596496 | 0.11 |
AT3G02750.1
AT3G02750.2 |
AT3G02750
|
Protein phosphatase 2C family protein |
| Chr5_-_14605310 | 0.11 |
AT5G36970.1
|
NHL25
|
NDR1/HIN1-like 25 |
| Chr2_+_1059545 | 0.11 |
AT2G03500.1
|
AT2G03500
|
Homeodomain-like superfamily protein |
| Chr5_-_21246682 | 0.11 |
AT5G52320.2
AT5G52320.1 |
CYP96A4
|
cytochrome P450, family 96, subfamily A, polypeptide 4 |
| Chr1_+_25319804 | 0.11 |
AT1G67560.1
|
LOX6
|
PLAT/LH2 domain-containing lipoxygenase family protein |
| Chr1_-_10647650 | 0.11 |
AT1G30250.1
|
AT1G30250
|
hypothetical protein |
| Chr1_+_1104493 | 0.11 |
AT1G04180.1
|
YUC9
|
YUCCA 9 |
| Chr5_+_24003888 | 0.11 |
AT5G59570.1
AT5G59570.2 |
BOA
|
Homeodomain-like superfamily protein |
| Chr4_+_7156150 | 0.11 |
AT4G11910.1
|
AT4G11910
|
STAY-GREEN-like protein |
| Chr2_+_15669131 | 0.11 |
AT2G37330.1
|
ALS3
|
aluminum sensitive 3 |
| Chr1_-_4020765 | 0.11 |
AT1G11910.2
|
APA1
|
aspartic proteinase A1 |
| Chr4_-_2482447 | 0.11 |
AT4G04890.1
|
PDF2
|
protodermal factor 2 |
| Chr1_-_4021043 | 0.11 |
AT1G11910.1
|
APA1
|
aspartic proteinase A1 |
| Chr4_-_2481590 | 0.11 |
AT4G04890.2
|
PDF2
|
protodermal factor 2 |
| Chr5_+_24752783 | 0.11 |
AT5G61560.1
AT5G61560.3 AT5G61560.2 |
AT5G61560
|
U-box domain-containing protein kinase family protein |
| Chr2_-_11284211 | 0.11 |
AT2G26530.2
AT2G26530.1 |
AR781
|
AR781, pheromone receptor-like protein (DUF1645) |
| Chr3_+_10520443 | 0.11 |
AT3G28210.1
AT3G28210.2 |
PMZ
|
zinc finger (AN1-like) family protein |
| Chr2_-_12625790 | 0.11 |
AT2G29450.1
|
GSTU5
|
glutathione S-transferase tau 5 |
| Chr5_+_21673432 | 0.11 |
AT5G53420.4
AT5G53420.1 AT5G53420.5 AT5G53420.3 |
AT5G53420
|
CCT motif family protein |
| Chr3_+_23054004 | 0.11 |
AT3G62300.2
AT3G62300.1 |
DUF7
|
agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 7) |
| Chr2_+_18677311 | 0.11 |
AT2G45300.4
AT2G45300.3 AT2G45300.2 AT2G45300.1 |
AT2G45300
|
RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta |
| Chr1_+_6142402 | 0.11 |
AT1G17840.1
|
ABCG11
|
white-brown complex-like protein |
| Chr3_+_5748497 | 0.10 |
AT3G16850.1
|
AT3G16850
|
Pectin lyase-like superfamily protein |
| Chr5_+_23096024 | 0.10 |
AT5G57070.1
|
AT5G57070
|
hydroxyproline-rich glycoprotein family protein |
| Chr1_-_22317070 | 0.10 |
AT1G60590.1
|
AT1G60590
|
Pectin lyase-like superfamily protein |
| Chr3_-_5618322 | 0.10 |
AT3G16510.1
|
AT3G16510
|
Calcium-dependent lipid-binding (CaLB domain) family protein |
| Chr4_+_8984787 | 0.10 |
AT4G15800.1
|
RALFL33
|
ralf-like 33 |
| Chr2_-_13968957 | 0.10 |
AT2G32930.2
AT2G32930.1 |
ZFN2
|
zinc finger nuclease 2 |
| Chr5_-_26970668 | 0.10 |
AT5G67640.1
|
AT5G67640
|
hypothetical protein |
| Chr3_+_18733021 | 0.10 |
AT3G50480.2
AT3G50480.1 |
HR4
|
homolog of RPW8 4 |
| Chr1_-_21436032 | 0.10 |
AT1G57870.4
AT1G57870.3 |
SK42
|
shaggy-like kinase 42 |
| Chr3_+_8172479 | 0.10 |
AT3G23000.1
|
CIPK7
|
CBL-interacting protein kinase 7 |
| Chr5_-_21421715 | 0.10 |
AT5G52860.1
|
ABCG8
|
ABC-2 type transporter family protein |
| Chr5_+_23098872 | 0.10 |
AT5G57080.1
|
AT5G57080
|
transmembrane protein |
| Chr3_-_3963984 | 0.10 |
AT3G12500.1
|
HCHIB
|
basic chitinase |
| Chr5_+_24758189 | 0.10 |
AT5G61570.1
|
AT5G61570
|
Protein kinase superfamily protein |
| Chr3_-_1643174 | 0.10 |
AT3G05640.2
AT3G05640.1 AT3G05640.3 |
AT3G05640
|
Protein phosphatase 2C family protein |
| Chr1_-_4973726 | 0.10 |
AT1G14530.1
AT1G14530.2 |
THH1
|
tobamovirus multiplication-like protein (DUF1084) |
| Chr5_+_1912013 | 0.10 |
AT5G06270.2
AT5G06270.1 |
AT5G06270
|
hypothetical protein |
| Chr3_+_21076505 | 0.10 |
AT3G56940.1
AT3G56940.2 |
CRD1
|
dicarboxylate diiron protein, putative (Crd1) |
| Chr4_+_13370951 | 0.10 |
AT4G26470.3
AT4G26470.1 AT4G26470.2 |
AT4G26470
|
Calcium-binding EF-hand family protein |
| Chr5_+_17451488 | 0.10 |
AT5G43420.1
|
AT5G43420
|
RING/U-box superfamily protein |
| Chr1_+_25570092 | 0.10 |
AT1G68220.1
|
AT1G68220
|
aerobic coproporphyrinogen-III oxidase (DUF1218) |
| Chr5_-_4722048 | 0.10 |
AT5G14640.2
|
SK13
|
shaggy-like kinase 13 |
| Chr3_+_5539631 | 0.10 |
AT3G16340.2
|
ABCG29
|
pleiotropic drug resistance 1 |
| Chr4_-_16814745 | 0.10 |
AT4G35360.3
AT4G35360.2 AT4G35360.1 |
AT4G35360
|
pantothenate kinase |
| Chr1_+_23425352 | 0.10 |
AT1G63170.1
|
AT1G63170
|
Zinc finger, C3HC4 type (RING finger) family protein |
| Chr4_+_1412785 | 0.10 |
AT4G03205.2
AT4G03205.1 |
hemf2
|
Coproporphyrinogen III oxidase |
| Chr4_-_9883432 | 0.10 |
AT4G17785.1
AT4G17785.2 |
MYB39
|
myb domain protein 39 |
| Chr5_-_4722371 | 0.10 |
AT5G14640.1
|
SK13
|
shaggy-like kinase 13 |
| Chr5_+_5795302 | 0.10 |
AT5G17580.1
|
AT5G17580
|
Phototropic-responsive NPH3 family protein |
| Chr2_+_12249649 | 0.10 |
AT2G28590.2
AT2G28590.1 |
AT2G28590
|
Protein kinase superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G18270
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.7 | GO:0009647 | skotomorphogenesis(GO:0009647) |
| 0.1 | 0.3 | GO:0006659 | phosphatidylserine metabolic process(GO:0006658) phosphatidylserine biosynthetic process(GO:0006659) |
| 0.1 | 0.3 | GO:0015696 | ammonium transport(GO:0015696) |
| 0.1 | 0.2 | GO:0042353 | fucose biosynthetic process(GO:0042353) |
| 0.1 | 0.3 | GO:0097438 | release of seed from dormancy(GO:0048838) exit from dormancy(GO:0097438) |
| 0.1 | 0.3 | GO:0006788 | heme oxidation(GO:0006788) |
| 0.0 | 0.2 | GO:0010599 | production of lsiRNA involved in RNA interference(GO:0010599) |
| 0.0 | 0.1 | GO:0015904 | tetracycline transport(GO:0015904) antibiotic transport(GO:0042891) |
| 0.0 | 0.3 | GO:0055129 | L-proline biosynthetic process(GO:0055129) |
| 0.0 | 0.1 | GO:0080051 | cutin transport(GO:0080051) |
| 0.0 | 0.2 | GO:0010226 | response to lithium ion(GO:0010226) |
| 0.0 | 0.2 | GO:0006809 | nitric oxide biosynthetic process(GO:0006809) |
| 0.0 | 0.1 | GO:0010480 | microsporocyte differentiation(GO:0010480) |
| 0.0 | 0.3 | GO:0009061 | anaerobic respiration(GO:0009061) |
| 0.0 | 0.0 | GO:0018377 | N-terminal protein lipidation(GO:0006498) N-terminal protein myristoylation(GO:0006499) protein myristoylation(GO:0018377) |
| 0.0 | 0.1 | GO:0019586 | uronic acid metabolic process(GO:0006063) galacturonate metabolic process(GO:0019586) |
| 0.0 | 0.2 | GO:0010098 | suspensor development(GO:0010098) |
| 0.0 | 0.3 | GO:1901642 | nucleoside transmembrane transport(GO:1901642) |
| 0.0 | 0.1 | GO:0010446 | response to alkaline pH(GO:0010446) |
| 0.0 | 0.1 | GO:0035017 | cuticle pattern formation(GO:0035017) |
| 0.0 | 0.1 | GO:0009871 | jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway(GO:0009871) |
| 0.0 | 0.1 | GO:0042550 | photosystem I stabilization(GO:0042550) |
| 0.0 | 0.2 | GO:0010358 | leaf shaping(GO:0010358) |
| 0.0 | 0.1 | GO:1901537 | positive regulation of DNA demethylation(GO:1901537) |
| 0.0 | 0.1 | GO:0030203 | aminoglycan biosynthetic process(GO:0006023) glycosaminoglycan biosynthetic process(GO:0006024) UDP-glucuronate biosynthetic process(GO:0006065) glycosaminoglycan metabolic process(GO:0030203) |
| 0.0 | 0.1 | GO:0009090 | homoserine biosynthetic process(GO:0009090) |
| 0.0 | 0.4 | GO:0009750 | response to fructose(GO:0009750) |
| 0.0 | 0.1 | GO:1904278 | regulation of wax biosynthetic process(GO:1904276) positive regulation of wax biosynthetic process(GO:1904278) |
| 0.0 | 0.1 | GO:0015802 | basic amino acid transport(GO:0015802) |
| 0.0 | 0.1 | GO:0009759 | indole glucosinolate biosynthetic process(GO:0009759) |
| 0.0 | 0.1 | GO:0071258 | cellular response to gravity(GO:0071258) |
| 0.0 | 0.1 | GO:0035627 | ceramide transport(GO:0035627) |
| 0.0 | 0.2 | GO:0043096 | adenine salvage(GO:0006168) purine nucleobase salvage(GO:0043096) |
| 0.0 | 0.1 | GO:0070509 | calcium ion import(GO:0070509) |
| 0.0 | 0.1 | GO:0051298 | centrosome cycle(GO:0007098) centriole replication(GO:0007099) centrosome organization(GO:0051297) centrosome duplication(GO:0051298) centriole assembly(GO:0098534) |
| 0.0 | 0.1 | GO:0006386 | termination of RNA polymerase III transcription(GO:0006386) |
| 0.0 | 0.2 | GO:0009942 | longitudinal axis specification(GO:0009942) |
| 0.0 | 0.1 | GO:0019464 | glycine decarboxylation via glycine cleavage system(GO:0019464) |
| 0.0 | 0.1 | GO:0018874 | benzoate metabolic process(GO:0018874) |
| 0.0 | 0.0 | GO:0045876 | positive regulation of sister chromatid cohesion(GO:0045876) |
| 0.0 | 0.0 | GO:0045764 | positive regulation of cellular amine metabolic process(GO:0033240) positive regulation of cellular amino acid metabolic process(GO:0045764) |
| 0.0 | 0.2 | GO:0048496 | maintenance of organ identity(GO:0048496) maintenance of floral organ identity(GO:0048497) |
| 0.0 | 0.2 | GO:0030497 | fatty acid elongation(GO:0030497) |
| 0.0 | 0.0 | GO:0072526 | pyridine-containing compound catabolic process(GO:0072526) |
| 0.0 | 0.0 | GO:0060776 | simple leaf morphogenesis(GO:0060776) |
| 0.0 | 0.3 | GO:0030522 | blue light signaling pathway(GO:0009785) intracellular receptor signaling pathway(GO:0030522) |
| 0.0 | 0.2 | GO:0046501 | protoporphyrinogen IX biosynthetic process(GO:0006782) protoporphyrinogen IX metabolic process(GO:0046501) |
| 0.0 | 0.1 | GO:0042989 | sequestering of actin monomers(GO:0042989) |
| 0.0 | 0.2 | GO:0010039 | response to iron ion(GO:0010039) |
| 0.0 | 0.0 | GO:0042539 | hypotonic salinity response(GO:0042539) |
| 0.0 | 0.0 | GO:0036473 | cell death in response to oxidative stress(GO:0036473) programmed cell death in response to reactive oxygen species(GO:0097468) |
| 0.0 | 0.0 | GO:0048480 | style development(GO:0048479) stigma development(GO:0048480) |
| 0.0 | 0.1 | GO:0009610 | response to symbiotic fungus(GO:0009610) |
| 0.0 | 0.2 | GO:0051123 | RNA polymerase II transcriptional preinitiation complex assembly(GO:0051123) |
| 0.0 | 0.5 | GO:0019761 | S-glycoside biosynthetic process(GO:0016144) glycosinolate biosynthetic process(GO:0019758) glucosinolate biosynthetic process(GO:0019761) |
| 0.0 | 0.1 | GO:0034051 | negative regulation of plant-type hypersensitive response(GO:0034051) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.1 | GO:0030093 | chloroplast photosystem I(GO:0030093) |
| 0.0 | 0.1 | GO:0005775 | vacuolar lumen(GO:0005775) |
| 0.0 | 0.2 | GO:0016272 | prefoldin complex(GO:0016272) |
| 0.0 | 0.1 | GO:0009897 | external side of plasma membrane(GO:0009897) |
| 0.0 | 0.2 | GO:0009368 | endopeptidase Clp complex(GO:0009368) |
| 0.0 | 0.1 | GO:0005814 | centrosome(GO:0005813) centriole(GO:0005814) |
| 0.0 | 0.1 | GO:0000812 | Swr1 complex(GO:0000812) |
| 0.0 | 0.1 | GO:0005672 | transcription factor TFIIA complex(GO:0005672) |
| 0.0 | 0.2 | GO:0005793 | endoplasmic reticulum-Golgi intermediate compartment(GO:0005793) |
| 0.0 | 0.1 | GO:0031261 | DNA replication preinitiation complex(GO:0031261) |
| 0.0 | 0.2 | GO:0009508 | plastid chromosome(GO:0009508) |
| 0.0 | 0.2 | GO:0031012 | extracellular matrix(GO:0031012) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 0.7 | GO:0016630 | protochlorophyllide reductase activity(GO:0016630) |
| 0.1 | 0.3 | GO:0008519 | ammonium transmembrane transporter activity(GO:0008519) |
| 0.1 | 0.3 | GO:0004512 | inositol-3-phosphate synthase activity(GO:0004512) |
| 0.1 | 0.2 | GO:0050577 | GDP-L-fucose synthase activity(GO:0050577) |
| 0.1 | 0.3 | GO:0004349 | glutamate 5-kinase activity(GO:0004349) glutamate-5-semialdehyde dehydrogenase activity(GO:0004350) |
| 0.1 | 0.3 | GO:0010295 | (+)-abscisic acid 8'-hydroxylase activity(GO:0010295) |
| 0.1 | 0.2 | GO:0051980 | iron chelate transmembrane transporter activity(GO:0015603) iron-nicotianamine transmembrane transporter activity(GO:0051980) |
| 0.0 | 0.3 | GO:0016984 | ribulose-bisphosphate carboxylase activity(GO:0016984) |
| 0.0 | 0.1 | GO:0051752 | phosphoglucan, water dikinase activity(GO:0051752) |
| 0.0 | 0.1 | GO:0016661 | oxidoreductase activity, acting on other nitrogenous compounds as donors(GO:0016661) |
| 0.0 | 0.1 | GO:0008883 | glutamyl-tRNA reductase activity(GO:0008883) |
| 0.0 | 0.1 | GO:0003852 | 2-isopropylmalate synthase activity(GO:0003852) |
| 0.0 | 0.1 | GO:0008395 | steroid hydroxylase activity(GO:0008395) |
| 0.0 | 0.1 | GO:0042895 | tetracycline transporter activity(GO:0008493) toxin transporter activity(GO:0019534) antibiotic transporter activity(GO:0042895) |
| 0.0 | 0.3 | GO:0004392 | heme oxygenase (decyclizing) activity(GO:0004392) |
| 0.0 | 0.2 | GO:0050378 | UDP-glucuronate 4-epimerase activity(GO:0050378) |
| 0.0 | 0.1 | GO:0045430 | chalcone isomerase activity(GO:0045430) |
| 0.0 | 0.1 | GO:0016165 | linoleate 13S-lipoxygenase activity(GO:0016165) |
| 0.0 | 0.1 | GO:0003959 | NADPH dehydrogenase activity(GO:0003959) |
| 0.0 | 0.1 | GO:0015186 | L-glutamine transmembrane transporter activity(GO:0015186) |
| 0.0 | 0.1 | GO:0080045 | quercetin 3'-O-glucosyltransferase activity(GO:0080045) |
| 0.0 | 0.1 | GO:0004072 | aspartate kinase activity(GO:0004072) |
| 0.0 | 0.1 | GO:0052640 | salicylic acid glucosyltransferase (glucoside-forming) activity(GO:0052640) |
| 0.0 | 0.1 | GO:0008936 | nicotinamidase activity(GO:0008936) |
| 0.0 | 0.2 | GO:0009922 | fatty acid elongase activity(GO:0009922) |
| 0.0 | 0.1 | GO:0046976 | histone methyltransferase activity (H3-K27 specific)(GO:0046976) |
| 0.0 | 0.2 | GO:0003999 | adenine phosphoribosyltransferase activity(GO:0003999) |
| 0.0 | 0.1 | GO:0004594 | pantothenate kinase activity(GO:0004594) |
| 0.0 | 0.9 | GO:0003713 | transcription coactivator activity(GO:0003713) |
| 0.0 | 0.1 | GO:0016618 | hydroxypyruvate reductase activity(GO:0016618) |
| 0.0 | 0.1 | GO:0004514 | nicotinate-nucleotide diphosphorylase (carboxylating) activity(GO:0004514) |
| 0.0 | 0.1 | GO:0003979 | UDP-glucose 6-dehydrogenase activity(GO:0003979) |
| 0.0 | 0.1 | GO:1902388 | ceramide transporter activity(GO:0035620) sphingolipid transporter activity(GO:0046624) ceramide 1-phosphate binding(GO:1902387) ceramide 1-phosphate transporter activity(GO:1902388) |
| 0.0 | 0.1 | GO:0031957 | very long-chain fatty acid-CoA ligase activity(GO:0031957) |
| 0.0 | 0.2 | GO:0052747 | sinapyl alcohol dehydrogenase activity(GO:0052747) |
| 0.0 | 0.1 | GO:0050567 | glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity(GO:0050567) |
| 0.0 | 0.2 | GO:0016847 | 1-aminocyclopropane-1-carboxylate synthase activity(GO:0016847) |
| 0.0 | 0.1 | GO:0004869 | cysteine-type endopeptidase inhibitor activity(GO:0004869) |
| 0.0 | 0.1 | GO:0080109 | indole-3-acetonitrile nitrile hydratase activity(GO:0080109) |
| 0.0 | 0.2 | GO:0016157 | sucrose synthase activity(GO:0016157) |
| 0.0 | 0.3 | GO:0005199 | structural constituent of cell wall(GO:0005199) |
| 0.0 | 0.2 | GO:0070300 | phosphatidic acid binding(GO:0070300) |
| 0.0 | 0.1 | GO:0050734 | hydroxycinnamoyltransferase activity(GO:0050734) |
| 0.0 | 0.1 | GO:0004430 | 1-phosphatidylinositol 4-kinase activity(GO:0004430) |
| 0.0 | 0.1 | GO:0052658 | inositol-1,4,5-trisphosphate 5-phosphatase activity(GO:0052658) |
| 0.0 | 0.3 | GO:0016168 | chlorophyll binding(GO:0016168) |
| 0.0 | 0.2 | GO:0051117 | ATPase binding(GO:0051117) |
| 0.0 | 0.2 | GO:0005227 | calcium activated cation channel activity(GO:0005227) ion gated channel activity(GO:0022839) |
| 0.0 | 0.1 | GO:0010179 | IAA-Ala conjugate hydrolase activity(GO:0010179) |
| 0.0 | 0.0 | GO:0052595 | tryptamine:oxygen oxidoreductase (deaminating) activity(GO:0052593) aminoacetone:oxygen oxidoreductase(deaminating) activity(GO:0052594) aliphatic-amine oxidase activity(GO:0052595) phenethylamine:oxygen oxidoreductase (deaminating) activity(GO:0052596) |
| 0.0 | 0.0 | GO:0051669 | levanase activity(GO:0031219) fructan beta-fructosidase activity(GO:0051669) |
| 0.0 | 0.1 | GO:0003785 | actin monomer binding(GO:0003785) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.1 | PID P53 REGULATION PATHWAY | p53 pathway |
| 0.0 | 0.1 | PID HIF2PATHWAY | HIF-2-alpha transcription factor network |
| 0.0 | 0.0 | PID RAS PATHWAY | Regulation of Ras family activation |
| 0.0 | 0.1 | SIG REGULATION OF THE ACTIN CYTOSKELETON BY RHO GTPASES | Genes related to regulation of the actin cytoskeleton |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.1 | REACTOME SIGNALING BY ROBO RECEPTOR | Genes involved in Signaling by Robo receptor |
| 0.0 | 0.1 | REACTOME ABACAVIR TRANSPORT AND METABOLISM | Genes involved in Abacavir transport and metabolism |
| 0.0 | 0.1 | REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT | Genes involved in Lipid digestion, mobilization, and transport |
| 0.0 | 0.1 | REACTOME PYRUVATE METABOLISM AND CITRIC ACID TCA CYCLE | Genes involved in Pyruvate metabolism and Citric Acid (TCA) cycle |
| 0.0 | 0.1 | REACTOME ANTIVIRAL MECHANISM BY IFN STIMULATED GENES | Genes involved in Antiviral mechanism by IFN-stimulated genes |
| 0.0 | 0.1 | REACTOME RNA POL II PRE TRANSCRIPTION EVENTS | Genes involved in RNA Polymerase II Pre-transcription Events |
| 0.0 | 0.0 | REACTOME INTEGRATION OF ENERGY METABOLISM | Genes involved in Integration of energy metabolism |
| 0.0 | 0.0 | REACTOME LATE PHASE OF HIV LIFE CYCLE | Genes involved in Late Phase of HIV Life Cycle |