Project
GSE130291:vernalization in Arabidopsis thaliana
Navigation
Downloads
Results for AT5G17800
Z-value: 0.85
Transcription factors associated with AT5G17800
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G17800
|
AT5G17800 | myb domain protein 56 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| MYB56 | arTal_v1_Chr5_+_5877113_5877113 | -0.64 | 1.3e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_+_6833564_6833659 Show fit | 1.21 |
AT5G20250.2
AT5G20250.1 AT5G20250.4 AT5G20250.3 |
Raffinose synthase family protein |
|
| arTal_v1_Chr5_-_16236_16236 Show fit | 1.12 |
AT5G01040.1
|
laccase 8 |
|
| arTal_v1_Chr4_-_12339967_12339967 Show fit | 1.06 |
AT4G23690.1
|
Disease resistance-responsive (dirigent-like protein) family protein |
|
| arTal_v1_Chr3_-_18525792_18525792 Show fit | 1.05 |
AT3G49960.1
|
Peroxidase superfamily protein |
|
| arTal_v1_Chr2_+_19508929_19508929 Show fit | 1.01 |
AT2G47550.1
|
Plant invertase/pectin methylesterase inhibitor superfamily |
|
| arTal_v1_Chr5_+_84474_84474 Show fit | 0.98 |
AT5G01210.1
|
HXXXD-type acyl-transferase family protein |
|
| arTal_v1_Chr2_-_16780368_16780368 Show fit | 0.95 |
AT2G40170.1
|
Stress induced protein |
|
| arTal_v1_Chr1_-_20458631_20458631 Show fit | 0.91 |
AT1G54860.1
|
Glycoprotein membrane precursor GPI-anchored |
|
| arTal_v1_Chr4_-_11896480_11896480 Show fit | 0.89 |
AT4G22590.1
|
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein |
|
| arTal_v1_Chr4_+_18185437_18185437 Show fit | 0.88 |
AT4G39030.1
|
MATE efflux family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G17800
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 1.8 | GO:0080167 | response to karrikin(GO:0080167) |
| 0.2 | 1.2 | GO:0019310 | inositol catabolic process(GO:0019310) |
| 0.1 | 1.2 | GO:0016998 | cell wall macromolecule catabolic process(GO:0016998) |
| 0.1 | 1.2 | GO:0060688 | regulation of morphogenesis of a branching structure(GO:0060688) regulation of secondary shoot formation(GO:2000032) |
| 0.2 | 1.1 | GO:0009807 | lignan metabolic process(GO:0009806) lignan biosynthetic process(GO:0009807) |
| 0.1 | 1.1 | GO:0046688 | response to copper ion(GO:0046688) |
| 0.0 | 1.1 | GO:0005992 | trehalose biosynthetic process(GO:0005992) |
| 0.0 | 1.0 | GO:0022611 | seed dormancy process(GO:0010162) dormancy process(GO:0022611) |
| 0.0 | 0.9 | GO:0009828 | plant-type cell wall loosening(GO:0009828) |
| 0.0 | 0.9 | GO:0045489 | pectin biosynthetic process(GO:0045489) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.6 | GO:0005850 | eukaryotic translation initiation factor 2 complex(GO:0005850) |
| 0.0 | 0.6 | GO:0030173 | integral component of Golgi membrane(GO:0030173) intrinsic component of Golgi membrane(GO:0031228) |
| 0.0 | 0.5 | GO:0000145 | exocyst(GO:0000145) |
| 0.0 | 0.4 | GO:0048226 | Casparian strip(GO:0048226) |
| 0.0 | 0.4 | GO:0005880 | nuclear microtubule(GO:0005880) |
| 0.1 | 0.3 | GO:0009501 | amyloplast(GO:0009501) |
| 0.0 | 0.3 | GO:0031209 | SCAR complex(GO:0031209) |
| 0.0 | 0.3 | GO:0045283 | mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)(GO:0005749) succinate dehydrogenase complex (ubiquinone)(GO:0045257) fumarate reductase complex(GO:0045283) |
| 0.1 | 0.2 | GO:0000220 | vacuolar proton-transporting V-type ATPase, V0 domain(GO:0000220) |
| 0.0 | 0.2 | GO:0016281 | eukaryotic translation initiation factor 4F complex(GO:0016281) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 2.4 | GO:0052716 | hydroquinone:oxygen oxidoreductase activity(GO:0052716) |
| 0.2 | 1.5 | GO:0047274 | galactinol-sucrose galactosyltransferase activity(GO:0047274) |
| 0.2 | 1.2 | GO:0050113 | inositol oxygenase activity(GO:0050113) |
| 0.1 | 1.2 | GO:0052736 | beta-glucanase activity(GO:0052736) |
| 0.0 | 1.1 | GO:0004805 | trehalose-phosphatase activity(GO:0004805) |
| 0.0 | 1.0 | GO:0004601 | peroxidase activity(GO:0004601) |
| 0.0 | 0.9 | GO:0047262 | polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262) |
| 0.0 | 0.8 | GO:0005199 | structural constituent of cell wall(GO:0005199) |
| 0.0 | 0.8 | GO:0016759 | cellulose synthase activity(GO:0016759) |
| 0.1 | 0.7 | GO:0035673 | oligopeptide transmembrane transporter activity(GO:0035673) peptide transmembrane transporter activity(GO:1904680) |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 0.5 | REACTOME FORMATION OF TUBULIN FOLDING INTERMEDIATES BY CCT TRIC | Genes involved in Formation of tubulin folding intermediates by CCT/TriC |
| 0.1 | 0.4 | REACTOME METABOLISM OF NUCLEOTIDES | Genes involved in Metabolism of nucleotides |
| 0.1 | 0.3 | REACTOME GLYCOSPHINGOLIPID METABOLISM | Genes involved in Glycosphingolipid metabolism |