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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT5G15830
Z-value: 0.93
Transcription factors associated with AT5G15830
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G15830
|
AT5G15830 | basic leucine-zipper 3 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| bZIP3 | arTal_v1_Chr5_+_5168194_5168194 | 0.67 | 9.0e-03 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_-_17712290_17712330 Show fit | 2.57 |
AT2G42540.2
AT2G42540.4 AT2G42540.1 AT2G42540.3 |
cold-regulated 15a |
|
| arTal_v1_Chr1_+_28975255_28975255 Show fit | 1.50 |
AT1G77120.1
|
alcohol dehydrogenase 1 |
|
| arTal_v1_Chr1_-_10289666_10289666 Show fit | 1.46 |
AT1G29395.1
|
COLD REGULATED 314 INNER MEMBRANE 1 |
|
| arTal_v1_Chr5_-_17199793_17199910 Show fit | 1.34 |
AT5G42900.1
AT5G42900.3 AT5G42900.2 |
cold regulated protein 27 |
|
| arTal_v1_Chr2_-_19370478_19370478 Show fit | 1.34 |
AT2G47180.1
|
galactinol synthase 1 |
|
| arTal_v1_Chr2_-_6493512_6493512 Show fit | 1.34 |
AT2G15020.1
|
hypothetical protein |
|
| arTal_v1_Chr3_-_489467_489467 Show fit | 1.31 |
AT3G02380.1
|
CONSTANS-like 2 |
|
| arTal_v1_Chr5_-_22712441_22712441 Show fit | 1.31 |
AT5G56080.1
|
nicotianamine synthase 2 |
|
| arTal_v1_Chr3_+_18940643_18940643 Show fit | 1.28 |
AT3G50970.1
|
dehydrin family protein |
|
| arTal_v1_Chr1_+_3019639_3019639 Show fit | 1.22 |
AT1G09350.1
|
galactinol synthase 3 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G15830
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 5.5 | GO:0055072 | iron ion homeostasis(GO:0055072) |
| 0.1 | 4.5 | GO:0015995 | chlorophyll biosynthetic process(GO:0015995) |
| 0.0 | 4.0 | GO:0009658 | chloroplast organization(GO:0009658) |
| 0.4 | 3.8 | GO:0009819 | drought recovery(GO:0009819) |
| 0.1 | 3.5 | GO:0006012 | galactose metabolic process(GO:0006012) |
| 0.1 | 3.5 | GO:0009637 | response to blue light(GO:0009637) |
| 0.6 | 3.4 | GO:0009413 | response to flooding(GO:0009413) |
| 0.1 | 3.3 | GO:0042631 | cellular response to water deprivation(GO:0042631) |
| 0.2 | 3.2 | GO:0048497 | maintenance of organ identity(GO:0048496) maintenance of floral organ identity(GO:0048497) |
| 0.0 | 3.1 | GO:0007623 | circadian rhythm(GO:0007623) rhythmic process(GO:0048511) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 28.2 | GO:0005829 | cytosol(GO:0005829) |
| 0.0 | 22.4 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 0.0 | 8.7 | GO:0005730 | nucleolus(GO:0005730) |
| 0.0 | 7.3 | GO:0009941 | chloroplast envelope(GO:0009941) |
| 0.1 | 3.6 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
| 0.0 | 3.5 | GO:0009579 | thylakoid(GO:0009579) |
| 0.0 | 3.2 | GO:0080008 | Cul4-RING E3 ubiquitin ligase complex(GO:0080008) |
| 0.1 | 2.9 | GO:0009528 | plastid inner membrane(GO:0009528) |
| 0.1 | 2.9 | GO:0009707 | chloroplast outer membrane(GO:0009707) |
| 0.1 | 2.7 | GO:0009898 | cytoplasmic side of plasma membrane(GO:0009898) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 5.5 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.0 | 4.3 | GO:0051015 | actin filament binding(GO:0051015) |
| 0.0 | 4.2 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.0 | 3.3 | GO:0000989 | transcription factor activity, transcription factor binding(GO:0000989) transcription cofactor activity(GO:0003712) |
| 0.4 | 3.2 | GO:0047216 | inositol 3-alpha-galactosyltransferase activity(GO:0047216) |
| 0.1 | 2.8 | GO:0048029 | monosaccharide binding(GO:0048029) |
| 0.0 | 2.7 | GO:0004712 | protein serine/threonine/tyrosine kinase activity(GO:0004712) |
| 0.2 | 2.6 | GO:0004430 | 1-phosphatidylinositol 4-kinase activity(GO:0004430) |
| 0.1 | 2.4 | GO:0003713 | transcription coactivator activity(GO:0003713) |
| 0.2 | 2.3 | GO:2001070 | starch binding(GO:2001070) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 1.0 | SIG PIP3 SIGNALING IN CARDIAC MYOCTES | Genes related to PIP3 signaling in cardiac myocytes |
| 0.2 | 0.6 | PID LYMPH ANGIOGENESIS PATHWAY | VEGFR3 signaling in lymphatic endothelium |
| 0.1 | 0.5 | PID FCER1 PATHWAY | Fc-epsilon receptor I signaling in mast cells |
| 0.1 | 0.4 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
| 0.1 | 0.4 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
| 0.0 | 0.3 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.0 | 0.2 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.0 | 0.2 | PID ATM PATHWAY | ATM pathway |
| 0.0 | 0.1 | SA G2 AND M PHASES | Cdc25 activates the cdc2/cyclin B complex to induce the G2/M transition. |
| 0.0 | 0.1 | PID CDC42 PATHWAY | CDC42 signaling events |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 2.1 | REACTOME NONSENSE MEDIATED DECAY ENHANCED BY THE EXON JUNCTION COMPLEX | Genes involved in Nonsense Mediated Decay Enhanced by the Exon Junction Complex |
| 0.1 | 0.8 | REACTOME ASSOCIATION OF TRIC CCT WITH TARGET PROTEINS DURING BIOSYNTHESIS | Genes involved in Association of TriC/CCT with target proteins during biosynthesis |
| 0.2 | 0.6 | REACTOME ARMS MEDIATED ACTIVATION | Genes involved in ARMS-mediated activation |
| 0.1 | 0.5 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
| 0.1 | 0.4 | REACTOME ABACAVIR TRANSPORT AND METABOLISM | Genes involved in Abacavir transport and metabolism |
| 0.1 | 0.4 | REACTOME TRNA AMINOACYLATION | Genes involved in tRNA Aminoacylation |
| 0.1 | 0.4 | REACTOME MRNA DECAY BY 5 TO 3 EXORIBONUCLEASE | Genes involved in mRNA Decay by 5' to 3' Exoribonuclease |
| 0.1 | 0.4 | REACTOME GLUTATHIONE CONJUGATION | Genes involved in Glutathione conjugation |
| 0.1 | 0.3 | REACTOME APOPTOTIC EXECUTION PHASE | Genes involved in Apoptotic execution phase |
| 0.1 | 0.3 | REACTOME SIGNALING BY SCF KIT | Genes involved in Signaling by SCF-KIT |