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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT5G15210

Z-value: 0.27

Transcription factors associated with AT5G15210

Gene Symbol Gene ID Gene Info
AT5G15210 homeobox protein 30

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
HB30arTal_v1_Chr5_-_4939207_4939207-0.332.5e-01Click!

Activity profile of AT5G15210 motif

Sorted Z-values of AT5G15210 motif

Promoter Log-likelihood Transcript Gene Gene Info
Chr5_+_24167996 0.27 AT5G60020.1
AT5G60020.2
laccase 17
Chr4_-_10316886 0.27 AT4G18780.1
cellulose synthase family protein
Chr2_-_15589369 0.24 AT2G37090.1
Nucleotide-diphospho-sugar transferases superfamily protein
Chr1_-_19161552 0.22 AT1G51680.3
AT1G51680.2
4-coumarate:CoA ligase 1
Chr2_-_17060652 0.22 AT2G40890.1
cytochrome P450, family 98, subfamily A, polypeptide 3
Chr1_-_28302728 0.21 AT1G75410.3
AT1G75410.1
BEL1-like homeodomain 3
Chr1_-_19161737 0.21 AT1G51680.1
4-coumarate:CoA ligase 1
Chr5_+_24168245 0.19 AT5G60020.3
laccase 17
Chr1_-_28302571 0.18 AT1G75410.2
BEL1-like homeodomain 3
Chr4_+_14034536 0.06 AT4G28370.3
AT4G28370.2
AT4G28370.1
AT4G28370.4
RING/U-box superfamily protein
Chr3_+_3203988 0.05 AT3G10340.1
phenylalanine ammonia-lyase 4
Chr3_-_6421983 0.03 AT3G18660.1
AT3G18660.3
AT3G18660.2
plant glycogenin-like starch initiation protein 1
Chr5_+_25050679 0.03 AT5G62380.2
NAC-domain protein 101
Chr5_-_24422274 0.03 AT5G60720.1
electron transporter, putative (Protein of unknown function, DUF547)
Chr5_+_25050152 0.01 AT5G62380.1
NAC-domain protein 101

Network of associatons between targets according to the STRING database.

First level regulatory network of AT5G15210

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 GO:0009805 coumarin biosynthetic process(GO:0009805)
0.1 0.3 GO:0010116 positive regulation of abscisic acid biosynthetic process(GO:0010116)
0.0 0.3 GO:0010417 glucuronoxylan metabolic process(GO:0010413) glucuronoxylan biosynthetic process(GO:0010417)
0.0 0.0 GO:0090058 metaxylem development(GO:0090058)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 GO:0046409 p-coumarate 3-hydroxylase activity(GO:0046409)
0.1 0.2 GO:0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity(GO:0015018) 1,4-beta-D-xylan synthase activity(GO:0047517)
0.0 0.4 GO:0016207 4-coumarate-CoA ligase activity(GO:0016207)
0.0 0.5 GO:0052716 hydroquinone:oxygen oxidoreductase activity(GO:0052716)
0.0 0.0 GO:0080116 glucuronoxylan glucuronosyltransferase activity(GO:0080116)
0.0 0.0 GO:0045548 phenylalanine ammonia-lyase activity(GO:0045548)