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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT5G14960
Z-value: 1.14
Transcription factors associated with AT5G14960
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G14960
|
AT5G14960 | DP-E2F-like 2 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| DEL2 | arTal_v1_Chr5_+_4844686_4844686 | -0.57 | 3.2e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_+_19428888_19428888 Show fit | 1.47 |
AT5G47980.1
|
HXXXD-type acyl-transferase family protein |
|
| arTal_v1_Chr5_+_16202142_16202142 Show fit | 1.06 |
AT5G40460.1
|
cyclin-dependent kinase inhibitor SMR3-like protein |
|
| arTal_v1_Chr4_+_15230008_15230008 Show fit | 1.03 |
AT4G31380.1
|
flowering-promoting factor-like protein |
|
| arTal_v1_Chr1_+_26464226_26464375 Show fit | 0.82 |
AT1G70270.2
AT1G70270.1 |
transcription factor |
|
| arTal_v1_Chr3_+_16271511_16271511 Show fit | 0.77 |
AT3G44720.1
|
arogenate dehydratase 4 |
|
| arTal_v1_Chr5_-_442187_442187 Show fit | 0.76 |
AT5G02220.1
|
cyclin-dependent kinase inhibitor |
|
| arTal_v1_Chr2_-_14541617_14541617 Show fit | 0.75 |
AT2G34500.1
|
cytochrome P450, family 710, subfamily A, polypeptide 1 |
|
| arTal_v1_Chr4_+_5668435_5668435 Show fit | 0.71 |
AT4G08868.1
|
hypothetical protein |
|
| arTal_v1_Chr5_-_25366012_25366012 Show fit | 0.69 |
AT5G63270.1
|
RPM1-interacting protein 4 (RIN4) family protein |
|
| arTal_v1_Chr5_-_20940895_20940895 Show fit | 0.69 |
AT5G51550.1
|
EXORDIUM like 3 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G14960
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.0 | GO:0098740 | pollen tube adhesion(GO:0009865) cell-cell adhesion(GO:0098609) multi organism cell adhesion(GO:0098740) |
| 0.1 | 1.0 | GO:0010161 | red light signaling pathway(GO:0010161) |
| 0.0 | 1.0 | GO:0016126 | sterol biosynthetic process(GO:0016126) |
| 0.1 | 0.8 | GO:0006272 | leading strand elongation(GO:0006272) |
| 0.1 | 0.8 | GO:1902223 | L-phenylalanine biosynthetic process(GO:0009094) erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process(GO:1902223) |
| 0.0 | 0.8 | GO:0009862 | systemic acquired resistance, salicylic acid mediated signaling pathway(GO:0009862) |
| 0.0 | 0.8 | GO:0010114 | response to red light(GO:0010114) |
| 0.0 | 0.8 | GO:0006865 | amino acid transport(GO:0006865) |
| 0.1 | 0.6 | GO:0043570 | meiotic mismatch repair(GO:0000710) maintenance of DNA repeat elements(GO:0043570) |
| 0.0 | 0.6 | GO:0019375 | galactolipid biosynthetic process(GO:0019375) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 1.0 | GO:0070382 | exocytic vesicle(GO:0070382) |
| 0.1 | 0.9 | GO:0005801 | cis-Golgi network(GO:0005801) |
| 0.1 | 0.8 | GO:0000808 | origin recognition complex(GO:0000808) nuclear origin of replication recognition complex(GO:0005664) |
| 0.2 | 0.7 | GO:0031390 | Ctf18 RFC-like complex(GO:0031390) |
| 0.2 | 0.6 | GO:0009317 | acetyl-CoA carboxylase complex(GO:0009317) |
| 0.0 | 0.6 | GO:0030687 | preribosome, large subunit precursor(GO:0030687) |
| 0.0 | 0.6 | GO:0009707 | chloroplast outer membrane(GO:0009707) |
| 0.0 | 0.5 | GO:0000148 | 1,3-beta-D-glucan synthase complex(GO:0000148) |
| 0.0 | 0.5 | GO:0016324 | apical plasma membrane(GO:0016324) |
| 0.0 | 0.5 | GO:0031012 | extracellular matrix(GO:0031012) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 1.6 | GO:0000156 | phosphorelay response regulator activity(GO:0000156) |
| 0.0 | 1.4 | GO:0051020 | GTPase binding(GO:0051020) |
| 0.0 | 1.3 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.0 | 1.2 | GO:0004722 | protein serine/threonine phosphatase activity(GO:0004722) |
| 0.1 | 1.0 | GO:0017048 | Rho GTPase binding(GO:0017048) |
| 0.0 | 0.9 | GO:0080030 | methyl indole-3-acetate esterase activity(GO:0080030) |
| 0.3 | 0.8 | GO:0000249 | C-22 sterol desaturase activity(GO:0000249) |
| 0.1 | 0.8 | GO:0004664 | prephenate dehydratase activity(GO:0004664) arogenate dehydratase activity(GO:0047769) |
| 0.0 | 0.8 | GO:0015174 | basic amino acid transmembrane transporter activity(GO:0015174) |
| 0.1 | 0.7 | GO:0003955 | NAD(P)H dehydrogenase (quinone) activity(GO:0003955) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.8 | PID CXCR4 PATHWAY | CXCR4-mediated signaling events |
| 0.0 | 0.2 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
| 0.0 | 0.2 | PID FANCONI PATHWAY | Fanconi anemia pathway |
| 0.0 | 0.1 | PID NFAT TFPATHWAY | Calcineurin-regulated NFAT-dependent transcription in lymphocytes |
| 0.0 | 0.1 | PID EPHA2 FWD PATHWAY | EPHA2 forward signaling |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 1.5 | REACTOME E2F ENABLED INHIBITION OF PRE REPLICATION COMPLEX FORMATION | Genes involved in E2F-enabled inhibition of pre-replication complex formation |
| 0.1 | 0.2 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.0 | 0.2 | REACTOME BIOSYNTHESIS OF THE N GLYCAN PRECURSOR DOLICHOL LIPID LINKED OLIGOSACCHARIDE LLO AND TRANSFER TO A NASCENT PROTEIN | Genes involved in Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein |
| 0.0 | 0.1 | REACTOME PRE NOTCH EXPRESSION AND PROCESSING | Genes involved in Pre-NOTCH Expression and Processing |
| 0.0 | 0.1 | REACTOME HOMOLOGOUS RECOMBINATION REPAIR OF REPLICATION INDEPENDENT DOUBLE STRAND BREAKS | Genes involved in Homologous recombination repair of replication-independent double-strand breaks |